Gchil9254.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9254.t1
Unique Name	Gchil9254.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	691

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2875428..2877500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_03312T0
Preferred name	DUR3
PFAMs	SSF
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K20989
KEGG TC	2.A.21.6
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008519,GO:0009056,GO:0009987,GO:0012505,GO:0015075,GO:0015101,GO:0015203,GO:0015204,GO:0015291,GO:0015293,GO:0015489,GO:0015606,GO:0015695,GO:0015696,GO:0015840,GO:0015846,GO:0015847,GO:0015848,GO:0016020,GO:0016021,GO:0019627,GO:0019755,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0034641,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043419,GO:0043603,GO:0043605,GO:0044237,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071918,GO:0071941,GO:0071944,GO:0072488,GO:0098655,GO:1901564,GO:1901565,GO:1901575,GO:1902047,GO:1903711
Evalue	1.08e-263
EggNOG OGs	COG0591@1\|root,KOG2348@2759\|Eukaryota,38H6Q@33154\|Opisthokonta
Description	putrescine transmembrane transporter activity
COG category	E
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9254	Gchil9254	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2875428..2877500 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9254.t1.start1	Gchil9254.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2875428..2875430 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9254.t1.CDS1	Gchil9254.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2875428..2877500 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9254.t1.exon1	Gchil9254.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2875428..2877500 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9254.t1.stop1	Gchil9254.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2877498..2877500 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9254.t1	Gchil9254.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2875428..2877500 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2875428..2877500+
coding sequence from alignment at tig00004370_pilon:2875428..2877500+

mRNA sequence

>Gchil9254.t1 ID=Gchil9254.t1|Name=Gchil9254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=691bp
MAASIADSIAQVNPFNCDTKADPSYVANYFGLEIYKCATQFFTDAPLPSW
TGWVVVLAFGVVFGLFTVGLVYLEQYITGVSMNSEFFNTAGRTVKIGLTA
SVLVSQWTWAATLLKSSSVAYDYGVSGPFWYASGATIQILLFSMLAVLVK
RRAPSCHTFLEIVRARWGKPAHIVFVVFAFMTNIIVTSMLILGGSAVVSA
LTGMNTDLASFLIPLGVILYTLAGGLKATFIASYFNTAVILIALCIFIFE
VYVFSDELGSPGKVWDNLNAINGLPGTAGKVDGNYQGSYLTMLSRDGLFF
GLTNIVGNFGTVFVDQSYWQSAIAATPSASWKGYIIGGLCWFAIPFSLAT
SLGLAALALSLPLSDGEIDAGLVPPAVATHLLGSGGAALILIMLFMAVTS
TGAAEQIAVSSLVSYDVYRTYINPNATGRQIIFVSRVAIVVFGVLMGVFG
IVLNAIGVKIGFLYLFMGVMIGSAVVPVAFSISWSKCSGLAAMCGAIGGL
ALGFTTWIVYGAIDGGVSVENLGEDRIMLAGNLVSILSSGAICIFVSLFI
KGDNCDWSNTKSIALVEEDENAVVSEETDAELARAQKLIMAWGVGLTLVL
VVLWPLLALPARAFSKGYFTFWVILSFIWGIIATVVMVTLPVYESFNTIL
SAVRGKKMGKNMDEESMMDTGKSMTDTVAESEMTARSLEM*

spliced messenger RNA

>Gchil9254.t1 ID=Gchil9254.t1|Name=Gchil9254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2073bp|location=Sequence derived from alignment at tig00004370_pilon:2875428..2877500+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCAGTATTGCCGACAGTATCGCTCAAGTTAATCCGTTCAATTG
TGATACAAAGGCTGACCCGAGTTATGTCGCAAACTACTTTGGCCTTGAGA
TATACAAATGTGCCACCCAGTTCTTCACTGATGCCCCTCTGCCGTCGTGG
ACCGGATGGGTCGTCGTGCTCGCTTTCGGTGTGGTGTTCGGACTTTTCAC
TGTTGGTTTAGTATACCTTGAGCAGTATATTACCGGTGTTTCTATGAACT
CCGAGTTTTTCAACACCGCCGGTCGTACCGTTAAGATTGGTCTCACCGCT
TCCGTGCTCGTGTCACAATGGACGTGGGCTGCCACGCTGTTGAAGTCCTC
CTCTGTTGCCTACGATTACGGTGTGTCAGGTCCTTTTTGGTATGCTTCCG
GTGCCACCATTCAGATCCTTCTGTTCTCTATGCTTGCCGTGTTGGTTAAG
CGTCGAGCGCCGTCATGCCATACGTTCCTGGAGATTGTGAGGGCACGCTG
GGGGAAACCGGCGCACATCGTATTTGTTGTGTTTGCCTTCATGACCAATA
TCATTGTCACTTCGATGCTTATTCTCGGCGGTTCTGCTGTGGTCTCTGCG
CTCACGGGCATGAACACCGACTTAGCCTCGTTCCTCATTCCGCTTGGTGT
CATTCTGTACACTCTCGCCGGAGGTCTAAAGGCTACCTTCATCGCATCTT
ACTTCAACACAGCCGTCATCCTTATTGCGCTGTGTATCTTCATATTCGAA
GTGTATGTTTTCAGCGATGAGTTGGGATCGCCAGGAAAGGTGTGGGACAA
CCTCAATGCCATCAACGGTCTCCCTGGTACAGCTGGTAAAGTCGATGGCA
ATTACCAAGGGTCATACCTCACCATGCTCTCCAGGGATGGGCTGTTTTTT
GGCTTGACCAACATCGTTGGCAACTTTGGAACTGTGTTTGTGGACCAATC
ATACTGGCAATCTGCCATCGCCGCTACCCCCTCTGCTTCCTGGAAGGGTT
ACATCATTGGTGGTCTTTGCTGGTTTGCAATTCCTTTCTCGTTGGCCACT
TCACTGGGGCTTGCTGCGCTGGCGCTTTCGCTTCCATTGAGTGACGGCGA
GATTGATGCTGGTCTGGTGCCGCCTGCTGTCGCGACTCACCTTCTGGGCT
CTGGAGGTGCCGCGCTGATACTGATAATGCTGTTCATGGCTGTGACGTCT
ACTGGTGCTGCCGAACAAATCGCCGTATCGTCACTGGTGTCTTATGATGT
ATACCGTACGTACATCAACCCGAATGCCACAGGTCGCCAGATCATTTTCG
TGTCGCGGGTGGCCATTGTGGTGTTTGGTGTTCTGATGGGCGTATTTGGT
ATTGTTCTCAACGCGATTGGCGTGAAGATAGGCTTTTTGTACTTGTTCAT
GGGAGTGATGATTGGATCTGCTGTGGTGCCTGTTGCATTCTCCATCTCGT
GGAGCAAGTGCTCCGGACTTGCGGCCATGTGTGGAGCAATTGGGGGGCTA
GCTCTCGGTTTCACGACTTGGATCGTATATGGTGCGATTGACGGCGGCGT
TAGTGTGGAGAACTTGGGGGAAGACCGCATCATGCTTGCAGGCAACCTTG
TGTCAATTCTGAGCTCGGGGGCGATTTGCATTTTTGTGTCATTGTTCATC
AAGGGTGATAATTGTGATTGGTCTAACACAAAATCAATTGCTCTGGTGGA
GGAGGACGAGAACGCCGTGGTGAGCGAGGAAACGGATGCGGAACTAGCGC
GTGCGCAAAAGCTGATCATGGCGTGGGGCGTGGGACTGACTTTGGTGCTA
GTTGTGTTGTGGCCGTTGCTAGCGCTGCCGGCTCGTGCTTTCTCCAAGGG
GTACTTTACATTCTGGGTGATTCTTTCGTTCATCTGGGGAATTATTGCTA
CGGTTGTTATGGTGACTCTGCCTGTGTACGAGAGCTTCAATACGATCTTA
AGCGCGGTGCGCGGCAAGAAAATGGGAAAGAACATGGACGAGGAATCGAT
GATGGACACGGGCAAATCAATGACTGACACTGTGGCTGAGTCTGAGATGA
CTGCGCGCAGCCTGGAGATGTAA

protein sequence of Gchil9254.t1

>Gchil9254.t1 ID=Gchil9254.t1|Name=Gchil9254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=691bp
MAASIADSIAQVNPFNCDTKADPSYVANYFGLEIYKCATQFFTDAPLPSW
TGWVVVLAFGVVFGLFTVGLVYLEQYITGVSMNSEFFNTAGRTVKIGLTA
SVLVSQWTWAATLLKSSSVAYDYGVSGPFWYASGATIQILLFSMLAVLVK
RRAPSCHTFLEIVRARWGKPAHIVFVVFAFMTNIIVTSMLILGGSAVVSA
LTGMNTDLASFLIPLGVILYTLAGGLKATFIASYFNTAVILIALCIFIFE
VYVFSDELGSPGKVWDNLNAINGLPGTAGKVDGNYQGSYLTMLSRDGLFF
GLTNIVGNFGTVFVDQSYWQSAIAATPSASWKGYIIGGLCWFAIPFSLAT
SLGLAALALSLPLSDGEIDAGLVPPAVATHLLGSGGAALILIMLFMAVTS
TGAAEQIAVSSLVSYDVYRTYINPNATGRQIIFVSRVAIVVFGVLMGVFG
IVLNAIGVKIGFLYLFMGVMIGSAVVPVAFSISWSKCSGLAAMCGAIGGL
ALGFTTWIVYGAIDGGVSVENLGEDRIMLAGNLVSILSSGAICIFVSLFI
KGDNCDWSNTKSIALVEEDENAVVSEETDAELARAQKLIMAWGVGLTLVL
VVLWPLLALPARAFSKGYFTFWVILSFIWGIIATVVMVTLPVYESFNTIL
SAVRGKKMGKNMDEESMMDTGKSMTDTVAESEMTARSLEM*

mRNA from alignment at tig00004370_pilon:2875428..2877500+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9254.t1 ID=Gchil9254.t1|Name=Gchil9254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2073bp|location=Sequence derived from alignment at tig00004370_pilon:2875428..2877500+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCCAGTATTGCCGACAGTATCGCTCAAGTTAATCCGTTCAATTG
TGATACAAAGGCTGACCCGAGTTATGTCGCAAACTACTTTGGCCTTGAGA
TATACAAATGTGCCACCCAGTTCTTCACTGATGCCCCTCTGCCGTCGTGG
ACCGGATGGGTCGTCGTGCTCGCTTTCGGTGTGGTGTTCGGACTTTTCAC
TGTTGGTTTAGTATACCTTGAGCAGTATATTACCGGTGTTTCTATGAACT
CCGAGTTTTTCAACACCGCCGGTCGTACCGTTAAGATTGGTCTCACCGCT
TCCGTGCTCGTGTCACAATGGACGTGGGCTGCCACGCTGTTGAAGTCCTC
CTCTGTTGCCTACGATTACGGTGTGTCAGGTCCTTTTTGGTATGCTTCCG
GTGCCACCATTCAGATCCTTCTGTTCTCTATGCTTGCCGTGTTGGTTAAG
CGTCGAGCGCCGTCATGCCATACGTTCCTGGAGATTGTGAGGGCACGCTG
GGGGAAACCGGCGCACATCGTATTTGTTGTGTTTGCCTTCATGACCAATA
TCATTGTCACTTCGATGCTTATTCTCGGCGGTTCTGCTGTGGTCTCTGCG
CTCACGGGCATGAACACCGACTTAGCCTCGTTCCTCATTCCGCTTGGTGT
CATTCTGTACACTCTCGCCGGAGGTCTAAAGGCTACCTTCATCGCATCTT
ACTTCAACACAGCCGTCATCCTTATTGCGCTGTGTATCTTCATATTCGAA
GTGTATGTTTTCAGCGATGAGTTGGGATCGCCAGGAAAGGTGTGGGACAA
CCTCAATGCCATCAACGGTCTCCCTGGTACAGCTGGTAAAGTCGATGGCA
ATTACCAAGGGTCATACCTCACCATGCTCTCCAGGGATGGGCTGTTTTTT
GGCTTGACCAACATCGTTGGCAACTTTGGAACTGTGTTTGTGGACCAATC
ATACTGGCAATCTGCCATCGCCGCTACCCCCTCTGCTTCCTGGAAGGGTT
ACATCATTGGTGGTCTTTGCTGGTTTGCAATTCCTTTCTCGTTGGCCACT
TCACTGGGGCTTGCTGCGCTGGCGCTTTCGCTTCCATTGAGTGACGGCGA
GATTGATGCTGGTCTGGTGCCGCCTGCTGTCGCGACTCACCTTCTGGGCT
CTGGAGGTGCCGCGCTGATACTGATAATGCTGTTCATGGCTGTGACGTCT
ACTGGTGCTGCCGAACAAATCGCCGTATCGTCACTGGTGTCTTATGATGT
ATACCGTACGTACATCAACCCGAATGCCACAGGTCGCCAGATCATTTTCG
TGTCGCGGGTGGCCATTGTGGTGTTTGGTGTTCTGATGGGCGTATTTGGT
ATTGTTCTCAACGCGATTGGCGTGAAGATAGGCTTTTTGTACTTGTTCAT
GGGAGTGATGATTGGATCTGCTGTGGTGCCTGTTGCATTCTCCATCTCGT
GGAGCAAGTGCTCCGGACTTGCGGCCATGTGTGGAGCAATTGGGGGGCTA
GCTCTCGGTTTCACGACTTGGATCGTATATGGTGCGATTGACGGCGGCGT
TAGTGTGGAGAACTTGGGGGAAGACCGCATCATGCTTGCAGGCAACCTTG
TGTCAATTCTGAGCTCGGGGGCGATTTGCATTTTTGTGTCATTGTTCATC
AAGGGTGATAATTGTGATTGGTCTAACACAAAATCAATTGCTCTGGTGGA
GGAGGACGAGAACGCCGTGGTGAGCGAGGAAACGGATGCGGAACTAGCGC
GTGCGCAAAAGCTGATCATGGCGTGGGGCGTGGGACTGACTTTGGTGCTA
GTTGTGTTGTGGCCGTTGCTAGCGCTGCCGGCTCGTGCTTTCTCCAAGGG
GTACTTTACATTCTGGGTGATTCTTTCGTTCATCTGGGGAATTATTGCTA
CGGTTGTTATGGTGACTCTGCCTGTGTACGAGAGCTTCAATACGATCTTA
AGCGCGGTGCGCGGCAAGAAAATGGGAAAGAACATGGACGAGGAATCGAT
GATGGACACGGGCAAATCAATGACTGACACTGTGGCTGAGTCTGAGATGA
CTGCGCGCAGCCTGGAGATGTAA

Coding sequence (CDS) from alignment at tig00004370_pilon:2875428..2877500+

>Gchil9254.t1 ID=Gchil9254.t1|Name=Gchil9254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2073bp|location=Sequence derived from alignment at tig00004370_pilon:2875428..2877500+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCCAGTATTGCCGACAGTATCGCTCAAGTTAATCCGTTCAATTG
TGATACAAAGGCTGACCCGAGTTATGTCGCAAACTACTTTGGCCTTGAGA
TATACAAATGTGCCACCCAGTTCTTCACTGATGCCCCTCTGCCGTCGTGG
ACCGGATGGGTCGTCGTGCTCGCTTTCGGTGTGGTGTTCGGACTTTTCAC
TGTTGGTTTAGTATACCTTGAGCAGTATATTACCGGTGTTTCTATGAACT
CCGAGTTTTTCAACACCGCCGGTCGTACCGTTAAGATTGGTCTCACCGCT
TCCGTGCTCGTGTCACAATGGACGTGGGCTGCCACGCTGTTGAAGTCCTC
CTCTGTTGCCTACGATTACGGTGTGTCAGGTCCTTTTTGGTATGCTTCCG
GTGCCACCATTCAGATCCTTCTGTTCTCTATGCTTGCCGTGTTGGTTAAG
CGTCGAGCGCCGTCATGCCATACGTTCCTGGAGATTGTGAGGGCACGCTG
GGGGAAACCGGCGCACATCGTATTTGTTGTGTTTGCCTTCATGACCAATA
TCATTGTCACTTCGATGCTTATTCTCGGCGGTTCTGCTGTGGTCTCTGCG
CTCACGGGCATGAACACCGACTTAGCCTCGTTCCTCATTCCGCTTGGTGT
CATTCTGTACACTCTCGCCGGAGGTCTAAAGGCTACCTTCATCGCATCTT
ACTTCAACACAGCCGTCATCCTTATTGCGCTGTGTATCTTCATATTCGAA
GTGTATGTTTTCAGCGATGAGTTGGGATCGCCAGGAAAGGTGTGGGACAA
CCTCAATGCCATCAACGGTCTCCCTGGTACAGCTGGTAAAGTCGATGGCA
ATTACCAAGGGTCATACCTCACCATGCTCTCCAGGGATGGGCTGTTTTTT
GGCTTGACCAACATCGTTGGCAACTTTGGAACTGTGTTTGTGGACCAATC
ATACTGGCAATCTGCCATCGCCGCTACCCCCTCTGCTTCCTGGAAGGGTT
ACATCATTGGTGGTCTTTGCTGGTTTGCAATTCCTTTCTCGTTGGCCACT
TCACTGGGGCTTGCTGCGCTGGCGCTTTCGCTTCCATTGAGTGACGGCGA
GATTGATGCTGGTCTGGTGCCGCCTGCTGTCGCGACTCACCTTCTGGGCT
CTGGAGGTGCCGCGCTGATACTGATAATGCTGTTCATGGCTGTGACGTCT
ACTGGTGCTGCCGAACAAATCGCCGTATCGTCACTGGTGTCTTATGATGT
ATACCGTACGTACATCAACCCGAATGCCACAGGTCGCCAGATCATTTTCG
TGTCGCGGGTGGCCATTGTGGTGTTTGGTGTTCTGATGGGCGTATTTGGT
ATTGTTCTCAACGCGATTGGCGTGAAGATAGGCTTTTTGTACTTGTTCAT
GGGAGTGATGATTGGATCTGCTGTGGTGCCTGTTGCATTCTCCATCTCGT
GGAGCAAGTGCTCCGGACTTGCGGCCATGTGTGGAGCAATTGGGGGGCTA
GCTCTCGGTTTCACGACTTGGATCGTATATGGTGCGATTGACGGCGGCGT
TAGTGTGGAGAACTTGGGGGAAGACCGCATCATGCTTGCAGGCAACCTTG
TGTCAATTCTGAGCTCGGGGGCGATTTGCATTTTTGTGTCATTGTTCATC
AAGGGTGATAATTGTGATTGGTCTAACACAAAATCAATTGCTCTGGTGGA
GGAGGACGAGAACGCCGTGGTGAGCGAGGAAACGGATGCGGAACTAGCGC
GTGCGCAAAAGCTGATCATGGCGTGGGGCGTGGGACTGACTTTGGTGCTA
GTTGTGTTGTGGCCGTTGCTAGCGCTGCCGGCTCGTGCTTTCTCCAAGGG
GTACTTTACATTCTGGGTGATTCTTTCGTTCATCTGGGGAATTATTGCTA
CGGTTGTTATGGTGACTCTGCCTGTGTACGAGAGCTTCAATACGATCTTA
AGCGCGGTGCGCGGCAAGAAAATGGGAAAGAACATGGACGAGGAATCGAT
GATGGACACGGGCAAATCAATGACTGACACTGTGGCTGAGTCTGAGATGA
CTGCGCGCAGCCTGGAGATGTAA