Gchil9209.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9209.t1
Unique NameGchil9209.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2572270..2573262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP070CT
Preferred nameSNZ1
PFAMsSOR_SNZ
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC01783,RC03043
KEGG koko:K06215
KEGG ReactionR07456
KEGG Pathwayko00750,map00750
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003922,GO:0005575,GO:0005576,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006725,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0017144,GO:0018130,GO:0019344,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901615,GO:1901617,GO:1902494,GO:1903600
Evalue3.12e-174
EggNOG OGsCOG0214@1|root,KOG1606@2759|Eukaryota
EC4.3.3.6
Descriptionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9209Gchil9209Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2572270..2573262 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9209.t1.stop1Gchil9209.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2572270..2572272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9209.t1.CDS1Gchil9209.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2572270..2573262 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9209.t1.exon1Gchil9209.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2572270..2573262 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9209.t1.start1Gchil9209.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2573260..2573262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9209.t1Gchil9209.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2572270..2573262 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9209.t1 ID=Gchil9209.t1|Name=Gchil9209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=331bp
MSANGNGHTNGTAHHLPGTAFAATEPSPPVSNDDVAHASTYATKVGLAQM
LKGGVIMDVVTPEQAKLAEAAGACAVMALERIPADIRANGQVARMSDPTM
IKSIQQAVSIPVMAKARIGHFVEAQILQAIGIDYIDESEVLTPADDLHHI
NKHNFAVPFVCGCRNLGEALRRISEGAAFIRTKGEAGTGNVVEAVRHARE
VNGDIRRLKGMDENELYTFAKEIGAPLHLVRRTKELGRLPVVQFAAGGVA
TPADAAMMMQLGLDGVFVGSGIFKSDNPQKRAEAIVKAVTNYNNPKVLAA
VSENLGNAMVGIEMDQLVQKWAADSRHKTH*
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spliced messenger RNA

>Gchil9209.t1 ID=Gchil9209.t1|Name=Gchil9209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00004370_pilon:2572270..2573262- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCAACGGAAATGGACACACCAACGGAACCGCCCACCACTTGCC
CGGCACCGCGTTCGCTGCCACCGAGCCCTCCCCGCCCGTGTCGAACGACG
ATGTCGCCCACGCCTCCACGTACGCCACCAAGGTTGGCCTCGCTCAGATG
CTCAAGGGCGGCGTCATCATGGACGTCGTAACGCCTGAGCAGGCGAAGCT
CGCCGAGGCTGCAGGCGCCTGCGCCGTCATGGCGCTTGAGCGAATCCCCG
CCGACATTCGCGCCAACGGCCAAGTGGCCCGCATGTCCGACCCCACTATG
ATCAAGAGCATTCAGCAAGCCGTGTCCATCCCCGTCATGGCCAAGGCTCG
CATCGGCCACTTTGTGGAGGCCCAGATTCTTCAGGCCATTGGTATCGACT
ACATTGATGAGAGCGAGGTGCTCACACCGGCTGACGATTTGCACCACATC
AACAAGCACAACTTTGCCGTCCCCTTTGTCTGTGGCTGCCGAAACCTTGG
CGAGGCGCTGCGTCGCATTTCTGAGGGTGCCGCCTTCATTCGCACCAAGG
GAGAGGCCGGCACTGGAAATGTGGTCGAGGCCGTTCGCCACGCTAGAGAA
GTGAACGGCGACATTCGTCGTCTCAAGGGCATGGATGAAAATGAGCTTTA
CACTTTTGCAAAGGAAATTGGCGCGCCGTTACATCTGGTACGACGCACCA
AGGAGCTTGGCAGGTTACCGGTTGTCCAGTTTGCTGCCGGAGGCGTTGCC
ACTCCGGCCGACGCTGCCATGATGATGCAGCTCGGTCTGGACGGCGTGTT
TGTTGGAAGCGGCATTTTCAAGAGTGACAACCCGCAGAAGAGAGCTGAGG
CCATTGTTAAGGCTGTCACCAATTACAACAACCCCAAGGTTCTTGCTGCC
GTTTCGGAGAACCTTGGTAACGCTATGGTCGGAATCGAGATGGACCAACT
CGTGCAAAAGTGGGCGGCTGACTCCCGGCACAAGACGCACTAG
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protein sequence of Gchil9209.t1

>Gchil9209.t1 ID=Gchil9209.t1|Name=Gchil9209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=331bp
MSANGNGHTNGTAHHLPGTAFAATEPSPPVSNDDVAHASTYATKVGLAQM
LKGGVIMDVVTPEQAKLAEAAGACAVMALERIPADIRANGQVARMSDPTM
IKSIQQAVSIPVMAKARIGHFVEAQILQAIGIDYIDESEVLTPADDLHHI
NKHNFAVPFVCGCRNLGEALRRISEGAAFIRTKGEAGTGNVVEAVRHARE
VNGDIRRLKGMDENELYTFAKEIGAPLHLVRRTKELGRLPVVQFAAGGVA
TPADAAMMMQLGLDGVFVGSGIFKSDNPQKRAEAIVKAVTNYNNPKVLAA
VSENLGNAMVGIEMDQLVQKWAADSRHKTH*
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mRNA from alignment at tig00004370_pilon:2572270..2573262-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9209.t1 ID=Gchil9209.t1|Name=Gchil9209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00004370_pilon:2572270..2573262- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCAACGGAAATGGACACACCAACGGAACCGCCCACCACTTGCC
CGGCACCGCGTTCGCTGCCACCGAGCCCTCCCCGCCCGTGTCGAACGACG
ATGTCGCCCACGCCTCCACGTACGCCACCAAGGTTGGCCTCGCTCAGATG
CTCAAGGGCGGCGTCATCATGGACGTCGTAACGCCTGAGCAGGCGAAGCT
CGCCGAGGCTGCAGGCGCCTGCGCCGTCATGGCGCTTGAGCGAATCCCCG
CCGACATTCGCGCCAACGGCCAAGTGGCCCGCATGTCCGACCCCACTATG
ATCAAGAGCATTCAGCAAGCCGTGTCCATCCCCGTCATGGCCAAGGCTCG
CATCGGCCACTTTGTGGAGGCCCAGATTCTTCAGGCCATTGGTATCGACT
ACATTGATGAGAGCGAGGTGCTCACACCGGCTGACGATTTGCACCACATC
AACAAGCACAACTTTGCCGTCCCCTTTGTCTGTGGCTGCCGAAACCTTGG
CGAGGCGCTGCGTCGCATTTCTGAGGGTGCCGCCTTCATTCGCACCAAGG
GAGAGGCCGGCACTGGAAATGTGGTCGAGGCCGTTCGCCACGCTAGAGAA
GTGAACGGCGACATTCGTCGTCTCAAGGGCATGGATGAAAATGAGCTTTA
CACTTTTGCAAAGGAAATTGGCGCGCCGTTACATCTGGTACGACGCACCA
AGGAGCTTGGCAGGTTACCGGTTGTCCAGTTTGCTGCCGGAGGCGTTGCC
ACTCCGGCCGACGCTGCCATGATGATGCAGCTCGGTCTGGACGGCGTGTT
TGTTGGAAGCGGCATTTTCAAGAGTGACAACCCGCAGAAGAGAGCTGAGG
CCATTGTTAAGGCTGTCACCAATTACAACAACCCCAAGGTTCTTGCTGCC
GTTTCGGAGAACCTTGGTAACGCTATGGTCGGAATCGAGATGGACCAACT
CGTGCAAAAGTGGGCGGCTGACTCCCGGCACAAGACGCACTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:2572270..2573262-

>Gchil9209.t1 ID=Gchil9209.t1|Name=Gchil9209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00004370_pilon:2572270..2573262- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCAACGGAAATGGACACACCAACGGAACCGCCCACCACTTGCC
CGGCACCGCGTTCGCTGCCACCGAGCCCTCCCCGCCCGTGTCGAACGACG
ATGTCGCCCACGCCTCCACGTACGCCACCAAGGTTGGCCTCGCTCAGATG
CTCAAGGGCGGCGTCATCATGGACGTCGTAACGCCTGAGCAGGCGAAGCT
CGCCGAGGCTGCAGGCGCCTGCGCCGTCATGGCGCTTGAGCGAATCCCCG
CCGACATTCGCGCCAACGGCCAAGTGGCCCGCATGTCCGACCCCACTATG
ATCAAGAGCATTCAGCAAGCCGTGTCCATCCCCGTCATGGCCAAGGCTCG
CATCGGCCACTTTGTGGAGGCCCAGATTCTTCAGGCCATTGGTATCGACT
ACATTGATGAGAGCGAGGTGCTCACACCGGCTGACGATTTGCACCACATC
AACAAGCACAACTTTGCCGTCCCCTTTGTCTGTGGCTGCCGAAACCTTGG
CGAGGCGCTGCGTCGCATTTCTGAGGGTGCCGCCTTCATTCGCACCAAGG
GAGAGGCCGGCACTGGAAATGTGGTCGAGGCCGTTCGCCACGCTAGAGAA
GTGAACGGCGACATTCGTCGTCTCAAGGGCATGGATGAAAATGAGCTTTA
CACTTTTGCAAAGGAAATTGGCGCGCCGTTACATCTGGTACGACGCACCA
AGGAGCTTGGCAGGTTACCGGTTGTCCAGTTTGCTGCCGGAGGCGTTGCC
ACTCCGGCCGACGCTGCCATGATGATGCAGCTCGGTCTGGACGGCGTGTT
TGTTGGAAGCGGCATTTTCAAGAGTGACAACCCGCAGAAGAGAGCTGAGG
CCATTGTTAAGGCTGTCACCAATTACAACAACCCCAAGGTTCTTGCTGCC
GTTTCGGAGAACCTTGGTAACGCTATGGTCGGAATCGAGATGGACCAACT
CGTGCAAAAGTGGGCGGCTGACTCCCGGCACAAGACGCACTAG
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