Gchil9205.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9205.t1
Unique Name	Gchil9205.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	787

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2563697..2566057 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005847795.1
PFAMs	Thioredoxin
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03671
KEGG Pathway	ko04621,ko05418,map04621,map05418
Evalue	2.1e-34
EggNOG OGs	COG0526@1\|root,KOG0907@2759\|Eukaryota,382XP@33090\|Viridiplantae,34NCP@3041\|Chlorophyta
Description	Thioredoxin
COG category	O
BRITE	ko00000,ko00001,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9205	Gchil9205	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2563697..2566057 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9205.t1.stop1	Gchil9205.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2563697..2563699 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9205.t1.CDS1	Gchil9205.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2563697..2566057 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9205.t1.exon1	Gchil9205.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2563697..2566057 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9205.t1.start1	Gchil9205.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2566055..2566057 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9205.t1	Gchil9205.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2563697..2566057 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2563697..2566057-
coding sequence from alignment at tig00004370_pilon:2563697..2566057-

mRNA sequence

>Gchil9205.t1 ID=Gchil9205.t1|Name=Gchil9205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=787bp
MSLFKRTAAEVDELETAYVALTASAEPIQNRKNALTSVQTKLAALQPAVQ
KFVIKADQGEKDPNKRVYGPSMVDKIRQLGTKLSSLSESIESTAATVDIQ
FAAYEKELEIMNEKKRAEEQRLRLEQEKILEQQRIKEEQHAKLLQEQREK
EEKLRMEKEKAEKEAALKCAQEEAHLKQQQLIEQEKEQAERKQREQQLLL
EKKAVEDAKRKLEEAQRAEAASKGISLTIKTTRGKSLPLHNVPPKCPVPE
LKQLIEKAHGVPQATQRLIFQARLLSDAKTIDMFNVKDGCAIHMVENARA
ATNTSSAATPSTPKPIVPLGTVCHLTNGRQQFREILENCANHRLVVVDWS
APWCGPCRMIAPVFERLASRFSDVTFVKVDTEATAANVELASQSGISAYP
TFQYYINSRCVHSFSGANATNIETGIRTYRTQVAPSGTATSGSGSQSTSR
PSLPGQLTQNVLRALTTLKRNCSQQDFIVAVRTLLTFVRNVVSHPGEGKY
RKVRTANSTFQTRLASKPGGTDAMLAFGFQRVQENGDSFLVLSEQASANP
ELSTINTQLEQALSAAGDTPAPQTSQPRTTATPPATGSTNNMGFNPLAGM
MGGGVPPGLGNMMGDEATQSVITQMLADPNFMQIAQEITADPSAMQRLAE
AHQAMTNGDFSAMQRLQNDPALMRLQAAMTSNPTVMNEAMRQLATGMGNA
YGGGQMPPMPPFQNTGTQGLNAGMQPAQNQTPSNPPPPPYPGAPTTAEEE
DRLLQEAIRLSMQDANADSNQQSEEKNGDQDPSKQT*

spliced messenger RNA

>Gchil9205.t1 ID=Gchil9205.t1|Name=Gchil9205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00004370_pilon:2563697..2566057- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTGTTCAAACGAACTGCCGCGGAAGTCGATGAGCTCGAAACAGC
CTATGTCGCTCTCACTGCATCCGCGGAGCCCATACAGAATCGCAAGAATG
CATTGACCTCCGTGCAAACTAAGCTCGCTGCCCTGCAGCCAGCCGTCCAA
AAGTTTGTCATTAAAGCAGACCAAGGAGAGAAAGACCCCAACAAGCGCGT
CTACGGCCCCTCCATGGTGGACAAAATCCGCCAGCTCGGCACCAAACTAT
CCTCTCTTTCTGAAAGCATTGAATCCACTGCTGCCACTGTGGACATCCAA
TTCGCCGCGTACGAGAAGGAGCTGGAGATTATGAATGAGAAGAAGCGAGC
GGAAGAGCAGCGACTACGCTTGGAGCAAGAGAAGATACTTGAACAACAGC
GTATCAAGGAGGAGCAACATGCTAAGCTTCTGCAAGAACAGCGCGAAAAA
GAAGAAAAATTGCGGATGGAGAAGGAGAAGGCAGAAAAGGAGGCTGCCTT
GAAGTGTGCTCAGGAAGAGGCCCACCTGAAACAGCAACAACTGATAGAAC
AGGAGAAAGAGCAAGCCGAACGAAAGCAACGTGAACAACAGCTTCTGCTC
GAAAAGAAAGCTGTAGAAGACGCCAAACGCAAACTAGAAGAAGCTCAGCG
TGCCGAGGCCGCCTCAAAAGGCATCTCTCTCACAATTAAGACCACTCGCG
GAAAGTCCTTGCCCCTGCACAATGTTCCCCCAAAATGTCCCGTTCCAGAG
CTAAAGCAACTCATCGAAAAAGCGCATGGAGTACCTCAAGCCACTCAACG
TCTCATCTTTCAAGCACGCCTCCTTTCAGATGCTAAAACTATTGATATGT
TCAATGTCAAGGATGGATGCGCGATTCATATGGTCGAAAACGCTAGAGCT
GCGACAAACACTTCATCAGCTGCCACTCCCAGCACACCCAAGCCAATTGT
TCCGCTGGGAACAGTCTGTCATCTAACAAATGGAAGGCAGCAGTTTCGCG
AGATCTTAGAGAACTGCGCTAATCATCGCCTTGTCGTCGTGGACTGGTCT
GCTCCTTGGTGCGGCCCCTGTCGTATGATTGCTCCGGTTTTTGAACGTCT
CGCCAGCCGATTCTCCGACGTTACTTTCGTTAAAGTCGATACCGAAGCAA
CTGCTGCAAACGTCGAGCTCGCCAGTCAGTCTGGTATATCGGCCTACCCC
ACCTTTCAGTACTACATTAACTCGCGCTGCGTACATTCCTTTTCCGGAGC
CAATGCCACCAACATTGAGACGGGTATCCGCACATATCGCACTCAGGTTG
CCCCATCGGGAACCGCCACATCGGGCTCCGGTTCACAATCCACGTCAAGG
CCTTCTCTTCCAGGGCAGCTCACTCAGAATGTGCTCCGAGCGCTCACCAC
TCTAAAACGAAACTGCTCTCAGCAGGATTTCATTGTCGCGGTCCGAACAC
TGCTCACCTTTGTTCGCAATGTTGTTAGCCACCCTGGTGAAGGAAAGTAT
CGGAAGGTACGCACTGCAAACTCTACTTTTCAGACAAGACTAGCCAGCAA
GCCCGGCGGTACCGATGCTATGCTTGCATTCGGTTTTCAACGGGTCCAAG
AGAACGGCGACTCTTTTCTTGTATTATCCGAACAGGCGTCTGCAAACCCA
GAGTTAAGCACAATCAACACGCAACTTGAGCAAGCGCTATCCGCAGCTGG
AGATACACCCGCTCCACAGACCTCTCAGCCGCGAACCACCGCAACACCTC
CTGCAACTGGATCTACAAACAATATGGGATTCAACCCGTTAGCAGGTATG
ATGGGCGGTGGCGTTCCCCCTGGTCTTGGAAACATGATGGGTGACGAGGC
AACACAGTCCGTGATTACGCAAATGCTTGCGGATCCTAACTTTATGCAGA
TTGCTCAAGAAATCACAGCTGACCCTTCTGCTATGCAGCGACTGGCTGAG
GCCCACCAAGCAATGACGAATGGAGACTTCTCGGCGATGCAAAGACTTCA
GAACGACCCTGCCCTTATGCGACTACAGGCAGCCATGACCTCCAACCCAA
CGGTGATGAACGAGGCAATGCGCCAGCTCGCCACTGGTATGGGTAACGCC
TACGGTGGTGGCCAAATGCCTCCCATGCCGCCTTTCCAAAATACCGGAAC
ACAAGGCTTAAATGCTGGGATGCAACCAGCCCAAAATCAGACCCCTTCAA
ATCCTCCACCGCCCCCCTACCCCGGTGCGCCGACCACCGCGGAAGAAGAG
GATCGTCTGTTACAAGAAGCCATTCGCCTGTCAATGCAGGATGCTAACGC
CGATAGTAATCAACAGTCAGAAGAAAAAAATGGTGATCAAGACCCGTCAA
AGCAAACGTAA

protein sequence of Gchil9205.t1

>Gchil9205.t1 ID=Gchil9205.t1|Name=Gchil9205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=787bp
MSLFKRTAAEVDELETAYVALTASAEPIQNRKNALTSVQTKLAALQPAVQ
KFVIKADQGEKDPNKRVYGPSMVDKIRQLGTKLSSLSESIESTAATVDIQ
FAAYEKELEIMNEKKRAEEQRLRLEQEKILEQQRIKEEQHAKLLQEQREK
EEKLRMEKEKAEKEAALKCAQEEAHLKQQQLIEQEKEQAERKQREQQLLL
EKKAVEDAKRKLEEAQRAEAASKGISLTIKTTRGKSLPLHNVPPKCPVPE
LKQLIEKAHGVPQATQRLIFQARLLSDAKTIDMFNVKDGCAIHMVENARA
ATNTSSAATPSTPKPIVPLGTVCHLTNGRQQFREILENCANHRLVVVDWS
APWCGPCRMIAPVFERLASRFSDVTFVKVDTEATAANVELASQSGISAYP
TFQYYINSRCVHSFSGANATNIETGIRTYRTQVAPSGTATSGSGSQSTSR
PSLPGQLTQNVLRALTTLKRNCSQQDFIVAVRTLLTFVRNVVSHPGEGKY
RKVRTANSTFQTRLASKPGGTDAMLAFGFQRVQENGDSFLVLSEQASANP
ELSTINTQLEQALSAAGDTPAPQTSQPRTTATPPATGSTNNMGFNPLAGM
MGGGVPPGLGNMMGDEATQSVITQMLADPNFMQIAQEITADPSAMQRLAE
AHQAMTNGDFSAMQRLQNDPALMRLQAAMTSNPTVMNEAMRQLATGMGNA
YGGGQMPPMPPFQNTGTQGLNAGMQPAQNQTPSNPPPPPYPGAPTTAEEE
DRLLQEAIRLSMQDANADSNQQSEEKNGDQDPSKQT*

mRNA from alignment at tig00004370_pilon:2563697..2566057-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9205.t1 ID=Gchil9205.t1|Name=Gchil9205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00004370_pilon:2563697..2566057- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCTGTTCAAACGAACTGCCGCGGAAGTCGATGAGCTCGAAACAGC
CTATGTCGCTCTCACTGCATCCGCGGAGCCCATACAGAATCGCAAGAATG
CATTGACCTCCGTGCAAACTAAGCTCGCTGCCCTGCAGCCAGCCGTCCAA
AAGTTTGTCATTAAAGCAGACCAAGGAGAGAAAGACCCCAACAAGCGCGT
CTACGGCCCCTCCATGGTGGACAAAATCCGCCAGCTCGGCACCAAACTAT
CCTCTCTTTCTGAAAGCATTGAATCCACTGCTGCCACTGTGGACATCCAA
TTCGCCGCGTACGAGAAGGAGCTGGAGATTATGAATGAGAAGAAGCGAGC
GGAAGAGCAGCGACTACGCTTGGAGCAAGAGAAGATACTTGAACAACAGC
GTATCAAGGAGGAGCAACATGCTAAGCTTCTGCAAGAACAGCGCGAAAAA
GAAGAAAAATTGCGGATGGAGAAGGAGAAGGCAGAAAAGGAGGCTGCCTT
GAAGTGTGCTCAGGAAGAGGCCCACCTGAAACAGCAACAACTGATAGAAC
AGGAGAAAGAGCAAGCCGAACGAAAGCAACGTGAACAACAGCTTCTGCTC
GAAAAGAAAGCTGTAGAAGACGCCAAACGCAAACTAGAAGAAGCTCAGCG
TGCCGAGGCCGCCTCAAAAGGCATCTCTCTCACAATTAAGACCACTCGCG
GAAAGTCCTTGCCCCTGCACAATGTTCCCCCAAAATGTCCCGTTCCAGAG
CTAAAGCAACTCATCGAAAAAGCGCATGGAGTACCTCAAGCCACTCAACG
TCTCATCTTTCAAGCACGCCTCCTTTCAGATGCTAAAACTATTGATATGT
TCAATGTCAAGGATGGATGCGCGATTCATATGGTCGAAAACGCTAGAGCT
GCGACAAACACTTCATCAGCTGCCACTCCCAGCACACCCAAGCCAATTGT
TCCGCTGGGAACAGTCTGTCATCTAACAAATGGAAGGCAGCAGTTTCGCG
AGATCTTAGAGAACTGCGCTAATCATCGCCTTGTCGTCGTGGACTGGTCT
GCTCCTTGGTGCGGCCCCTGTCGTATGATTGCTCCGGTTTTTGAACGTCT
CGCCAGCCGATTCTCCGACGTTACTTTCGTTAAAGTCGATACCGAAGCAA
CTGCTGCAAACGTCGAGCTCGCCAGTCAGTCTGGTATATCGGCCTACCCC
ACCTTTCAGTACTACATTAACTCGCGCTGCGTACATTCCTTTTCCGGAGC
CAATGCCACCAACATTGAGACGGGTATCCGCACATATCGCACTCAGGTTG
CCCCATCGGGAACCGCCACATCGGGCTCCGGTTCACAATCCACGTCAAGG
CCTTCTCTTCCAGGGCAGCTCACTCAGAATGTGCTCCGAGCGCTCACCAC
TCTAAAACGAAACTGCTCTCAGCAGGATTTCATTGTCGCGGTCCGAACAC
TGCTCACCTTTGTTCGCAATGTTGTTAGCCACCCTGGTGAAGGAAAGTAT
CGGAAGGTACGCACTGCAAACTCTACTTTTCAGACAAGACTAGCCAGCAA
GCCCGGCGGTACCGATGCTATGCTTGCATTCGGTTTTCAACGGGTCCAAG
AGAACGGCGACTCTTTTCTTGTATTATCCGAACAGGCGTCTGCAAACCCA
GAGTTAAGCACAATCAACACGCAACTTGAGCAAGCGCTATCCGCAGCTGG
AGATACACCCGCTCCACAGACCTCTCAGCCGCGAACCACCGCAACACCTC
CTGCAACTGGATCTACAAACAATATGGGATTCAACCCGTTAGCAGGTATG
ATGGGCGGTGGCGTTCCCCCTGGTCTTGGAAACATGATGGGTGACGAGGC
AACACAGTCCGTGATTACGCAAATGCTTGCGGATCCTAACTTTATGCAGA
TTGCTCAAGAAATCACAGCTGACCCTTCTGCTATGCAGCGACTGGCTGAG
GCCCACCAAGCAATGACGAATGGAGACTTCTCGGCGATGCAAAGACTTCA
GAACGACCCTGCCCTTATGCGACTACAGGCAGCCATGACCTCCAACCCAA
CGGTGATGAACGAGGCAATGCGCCAGCTCGCCACTGGTATGGGTAACGCC
TACGGTGGTGGCCAAATGCCTCCCATGCCGCCTTTCCAAAATACCGGAAC
ACAAGGCTTAAATGCTGGGATGCAACCAGCCCAAAATCAGACCCCTTCAA
ATCCTCCACCGCCCCCCTACCCCGGTGCGCCGACCACCGCGGAAGAAGAG
GATCGTCTGTTACAAGAAGCCATTCGCCTGTCAATGCAGGATGCTAACGC
CGATAGTAATCAACAGTCAGAAGAAAAAAATGGTGATCAAGACCCGTCAA
AGCAAACGTAA

Coding sequence (CDS) from alignment at tig00004370_pilon:2563697..2566057-

>Gchil9205.t1 ID=Gchil9205.t1|Name=Gchil9205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2361bp|location=Sequence derived from alignment at tig00004370_pilon:2563697..2566057- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCTGTTCAAACGAACTGCCGCGGAAGTCGATGAGCTCGAAACAGC
CTATGTCGCTCTCACTGCATCCGCGGAGCCCATACAGAATCGCAAGAATG
CATTGACCTCCGTGCAAACTAAGCTCGCTGCCCTGCAGCCAGCCGTCCAA
AAGTTTGTCATTAAAGCAGACCAAGGAGAGAAAGACCCCAACAAGCGCGT
CTACGGCCCCTCCATGGTGGACAAAATCCGCCAGCTCGGCACCAAACTAT
CCTCTCTTTCTGAAAGCATTGAATCCACTGCTGCCACTGTGGACATCCAA
TTCGCCGCGTACGAGAAGGAGCTGGAGATTATGAATGAGAAGAAGCGAGC
GGAAGAGCAGCGACTACGCTTGGAGCAAGAGAAGATACTTGAACAACAGC
GTATCAAGGAGGAGCAACATGCTAAGCTTCTGCAAGAACAGCGCGAAAAA
GAAGAAAAATTGCGGATGGAGAAGGAGAAGGCAGAAAAGGAGGCTGCCTT
GAAGTGTGCTCAGGAAGAGGCCCACCTGAAACAGCAACAACTGATAGAAC
AGGAGAAAGAGCAAGCCGAACGAAAGCAACGTGAACAACAGCTTCTGCTC
GAAAAGAAAGCTGTAGAAGACGCCAAACGCAAACTAGAAGAAGCTCAGCG
TGCCGAGGCCGCCTCAAAAGGCATCTCTCTCACAATTAAGACCACTCGCG
GAAAGTCCTTGCCCCTGCACAATGTTCCCCCAAAATGTCCCGTTCCAGAG
CTAAAGCAACTCATCGAAAAAGCGCATGGAGTACCTCAAGCCACTCAACG
TCTCATCTTTCAAGCACGCCTCCTTTCAGATGCTAAAACTATTGATATGT
TCAATGTCAAGGATGGATGCGCGATTCATATGGTCGAAAACGCTAGAGCT
GCGACAAACACTTCATCAGCTGCCACTCCCAGCACACCCAAGCCAATTGT
TCCGCTGGGAACAGTCTGTCATCTAACAAATGGAAGGCAGCAGTTTCGCG
AGATCTTAGAGAACTGCGCTAATCATCGCCTTGTCGTCGTGGACTGGTCT
GCTCCTTGGTGCGGCCCCTGTCGTATGATTGCTCCGGTTTTTGAACGTCT
CGCCAGCCGATTCTCCGACGTTACTTTCGTTAAAGTCGATACCGAAGCAA
CTGCTGCAAACGTCGAGCTCGCCAGTCAGTCTGGTATATCGGCCTACCCC
ACCTTTCAGTACTACATTAACTCGCGCTGCGTACATTCCTTTTCCGGAGC
CAATGCCACCAACATTGAGACGGGTATCCGCACATATCGCACTCAGGTTG
CCCCATCGGGAACCGCCACATCGGGCTCCGGTTCACAATCCACGTCAAGG
CCTTCTCTTCCAGGGCAGCTCACTCAGAATGTGCTCCGAGCGCTCACCAC
TCTAAAACGAAACTGCTCTCAGCAGGATTTCATTGTCGCGGTCCGAACAC
TGCTCACCTTTGTTCGCAATGTTGTTAGCCACCCTGGTGAAGGAAAGTAT
CGGAAGGTACGCACTGCAAACTCTACTTTTCAGACAAGACTAGCCAGCAA
GCCCGGCGGTACCGATGCTATGCTTGCATTCGGTTTTCAACGGGTCCAAG
AGAACGGCGACTCTTTTCTTGTATTATCCGAACAGGCGTCTGCAAACCCA
GAGTTAAGCACAATCAACACGCAACTTGAGCAAGCGCTATCCGCAGCTGG
AGATACACCCGCTCCACAGACCTCTCAGCCGCGAACCACCGCAACACCTC
CTGCAACTGGATCTACAAACAATATGGGATTCAACCCGTTAGCAGGTATG
ATGGGCGGTGGCGTTCCCCCTGGTCTTGGAAACATGATGGGTGACGAGGC
AACACAGTCCGTGATTACGCAAATGCTTGCGGATCCTAACTTTATGCAGA
TTGCTCAAGAAATCACAGCTGACCCTTCTGCTATGCAGCGACTGGCTGAG
GCCCACCAAGCAATGACGAATGGAGACTTCTCGGCGATGCAAAGACTTCA
GAACGACCCTGCCCTTATGCGACTACAGGCAGCCATGACCTCCAACCCAA
CGGTGATGAACGAGGCAATGCGCCAGCTCGCCACTGGTATGGGTAACGCC
TACGGTGGTGGCCAAATGCCTCCCATGCCGCCTTTCCAAAATACCGGAAC
ACAAGGCTTAAATGCTGGGATGCAACCAGCCCAAAATCAGACCCCTTCAA
ATCCTCCACCGCCCCCCTACCCCGGTGCGCCGACCACCGCGGAAGAAGAG
GATCGTCTGTTACAAGAAGCCATTCGCCTGTCAATGCAGGATGCTAACGC
CGATAGTAATCAACAGTCAGAAGAAAAAAATGGTGATCAAGACCCGTCAA
AGCAAACGTAA