Gchil920.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil920.t1
Unique Name	Gchil920.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:1420503..1421828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1385511.N783_05125
Preferred name	cpdB
PFAMs	5_nucleotid_C,CHB_HEX_C_1,LTD,LysM,Metallophos,SLH
Max annot lvl	91061\|Bacilli
KEGG rclass	RC00017,RC00078,RC00296
KEGG ko	ko:K01081,ko:K07004,ko:K08693,ko:K11751
KEGG Reaction	R00183,R00511,R00963,R01126,R01227,R01562,R01569,R01664,R01877,R01968,R02088,R02102,R02148,R02323,R02370,R02719,R03346,R03537,R03538,R03929,R05135
KEGG Pathway	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Evalue	8.36e-42
EggNOG OGs	COG0737@1\|root,COG0737@2\|Bacteria,1TPV2@1239\|Firmicutes,4H9VJ@91061\|Bacilli
EC	3.1.3.5,3.1.3.6,3.1.4.16,3.6.1.45
Description	Belongs to the 5'-nucleotidase family
COG category	F
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil920	Gchil920	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 1420503..1421828 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil920.t1.start1	Gchil920.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 1420503..1420505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil920.t1.CDS1	Gchil920.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 1420503..1421828 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil920.t1.exon1	Gchil920.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 1420503..1421828 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil920.t1.stop1	Gchil920.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 1421826..1421828 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil920.t1	Gchil920.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 1420503..1421828 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:1420503..1421828+
coding sequence from alignment at tig00000017_pilon:1420503..1421828+

mRNA sequence

>Gchil920.t1 ID=Gchil920.t1|Name=Gchil920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=442bp
MLKCDVRISAGDFSFGTLFWTLFDDEIATAAYNAIGYDIAIFGIEDVTVG
VDPIFNTIRHTPHVNWLGTNINLLGHPPGVTLRKTLDKGDACFVSALTPL
LNTLYDYEEFLEIEDPVKAIQDSVSECKNKQNIVAVTHLGLSSDEELCRM
VPELDLVIGGFTMDDLAKDGSYPRRVERADGTICYVVTAFAFGRQLGFLD
LNFNQGQLSFDGYGVLPLDGRIRLDREVQRVIDGFSRRLERENLDVPVAT
LTAAIPDDCVGKECARGNLICDTLLDAESHADLCIVNSDYSRGSLNEGTV
TRGDVIGLATFPNNLSVVTISGHGVLEALENGLSAPLDSPIGFGPFPQVG
GIVVRFDLSRHVGRRVVSVHIRGHPLDERETYRVATSSFLALMNYGYTWD
GARRIEITQRTIRGLVESFLSSTSPYTPVVEGRLVDVSNNA*

spliced messenger RNA

>Gchil920.t1 ID=Gchil920.t1|Name=Gchil920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000017_pilon:1420503..1421828+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAATGCGATGTTCGAATTTCTGCTGGTGACTTTTCTTTTGGTAC
ACTCTTCTGGACTTTGTTCGATGACGAAATTGCCACCGCAGCCTACAACG
CAATAGGCTATGACATTGCCATCTTCGGCATCGAGGACGTCACGGTCGGC
GTAGATCCCATCTTCAACACTATACGCCATACTCCTCATGTCAACTGGCT
GGGCACCAACATCAACTTGTTAGGGCATCCACCAGGCGTGACTCTTAGAA
AAACGTTGGACAAGGGAGATGCCTGTTTTGTTTCAGCATTGACGCCGCTG
TTGAACACGTTGTACGACTACGAAGAATTCCTTGAGATTGAAGACCCTGT
CAAGGCCATCCAAGATAGTGTATCGGAGTGCAAGAATAAGCAAAATATTG
TTGCCGTGACGCATCTGGGCCTGAGTAGTGACGAGGAGCTTTGCAGAATG
GTTCCGGAGCTGGACTTGGTTATTGGCGGCTTCACCATGGACGACCTCGC
AAAGGATGGCAGCTATCCTCGCCGCGTGGAGCGTGCCGATGGGACCATAT
GTTATGTGGTAACTGCGTTTGCCTTTGGGAGACAACTGGGCTTCTTGGAC
CTAAACTTCAACCAGGGACAGCTGAGCTTTGATGGCTATGGAGTGCTGCC
GCTGGATGGGAGGATTCGGCTAGACCGAGAGGTTCAGCGCGTGATAGACG
GCTTCTCAAGACGGCTGGAGAGGGAAAACCTCGATGTACCGGTAGCGACG
TTAACTGCCGCTATTCCGGACGACTGTGTCGGAAAGGAATGTGCGAGGGG
AAACTTGATTTGTGACACGCTCCTTGATGCAGAAAGTCACGCTGATTTAT
GCATTGTGAACTCAGACTACTCTCGCGGATCACTGAATGAGGGGACAGTG
ACCCGGGGTGATGTAATTGGGTTGGCAACGTTTCCGAACAACCTGTCCGT
GGTCACCATCTCTGGGCACGGCGTGTTGGAGGCTCTCGAGAACGGTCTTT
CGGCACCGCTGGACAGCCCTATCGGGTTTGGTCCATTCCCGCAAGTGGGC
GGGATCGTTGTTAGATTCGACTTGTCGAGACATGTGGGAAGACGAGTGGT
GAGTGTGCACATTAGAGGGCATCCTCTGGATGAGAGAGAGACATACCGCG
TTGCGACTAGCTCGTTCTTGGCATTGATGAATTACGGGTACACATGGGAT
GGGGCGAGACGCATTGAGATCACGCAGAGGACCATAAGGGGGCTGGTTGA
ATCGTTCTTGAGTTCCACGAGCCCGTACACCCCAGTGGTTGAGGGCCGGT
TGGTCGATGTCTCCAACAACGCATGA

protein sequence of Gchil920.t1

>Gchil920.t1 ID=Gchil920.t1|Name=Gchil920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=442bp
MLKCDVRISAGDFSFGTLFWTLFDDEIATAAYNAIGYDIAIFGIEDVTVG
VDPIFNTIRHTPHVNWLGTNINLLGHPPGVTLRKTLDKGDACFVSALTPL
LNTLYDYEEFLEIEDPVKAIQDSVSECKNKQNIVAVTHLGLSSDEELCRM
VPELDLVIGGFTMDDLAKDGSYPRRVERADGTICYVVTAFAFGRQLGFLD
LNFNQGQLSFDGYGVLPLDGRIRLDREVQRVIDGFSRRLERENLDVPVAT
LTAAIPDDCVGKECARGNLICDTLLDAESHADLCIVNSDYSRGSLNEGTV
TRGDVIGLATFPNNLSVVTISGHGVLEALENGLSAPLDSPIGFGPFPQVG
GIVVRFDLSRHVGRRVVSVHIRGHPLDERETYRVATSSFLALMNYGYTWD
GARRIEITQRTIRGLVESFLSSTSPYTPVVEGRLVDVSNNA*

mRNA from alignment at tig00000017_pilon:1420503..1421828+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil920.t1 ID=Gchil920.t1|Name=Gchil920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000017_pilon:1420503..1421828+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAAATGCGATGTTCGAATTTCTGCTGGTGACTTTTCTTTTGGTAC
ACTCTTCTGGACTTTGTTCGATGACGAAATTGCCACCGCAGCCTACAACG
CAATAGGCTATGACATTGCCATCTTCGGCATCGAGGACGTCACGGTCGGC
GTAGATCCCATCTTCAACACTATACGCCATACTCCTCATGTCAACTGGCT
GGGCACCAACATCAACTTGTTAGGGCATCCACCAGGCGTGACTCTTAGAA
AAACGTTGGACAAGGGAGATGCCTGTTTTGTTTCAGCATTGACGCCGCTG
TTGAACACGTTGTACGACTACGAAGAATTCCTTGAGATTGAAGACCCTGT
CAAGGCCATCCAAGATAGTGTATCGGAGTGCAAGAATAAGCAAAATATTG
TTGCCGTGACGCATCTGGGCCTGAGTAGTGACGAGGAGCTTTGCAGAATG
GTTCCGGAGCTGGACTTGGTTATTGGCGGCTTCACCATGGACGACCTCGC
AAAGGATGGCAGCTATCCTCGCCGCGTGGAGCGTGCCGATGGGACCATAT
GTTATGTGGTAACTGCGTTTGCCTTTGGGAGACAACTGGGCTTCTTGGAC
CTAAACTTCAACCAGGGACAGCTGAGCTTTGATGGCTATGGAGTGCTGCC
GCTGGATGGGAGGATTCGGCTAGACCGAGAGGTTCAGCGCGTGATAGACG
GCTTCTCAAGACGGCTGGAGAGGGAAAACCTCGATGTACCGGTAGCGACG
TTAACTGCCGCTATTCCGGACGACTGTGTCGGAAAGGAATGTGCGAGGGG
AAACTTGATTTGTGACACGCTCCTTGATGCAGAAAGTCACGCTGATTTAT
GCATTGTGAACTCAGACTACTCTCGCGGATCACTGAATGAGGGGACAGTG
ACCCGGGGTGATGTAATTGGGTTGGCAACGTTTCCGAACAACCTGTCCGT
GGTCACCATCTCTGGGCACGGCGTGTTGGAGGCTCTCGAGAACGGTCTTT
CGGCACCGCTGGACAGCCCTATCGGGTTTGGTCCATTCCCGCAAGTGGGC
GGGATCGTTGTTAGATTCGACTTGTCGAGACATGTGGGAAGACGAGTGGT
GAGTGTGCACATTAGAGGGCATCCTCTGGATGAGAGAGAGACATACCGCG
TTGCGACTAGCTCGTTCTTGGCATTGATGAATTACGGGTACACATGGGAT
GGGGCGAGACGCATTGAGATCACGCAGAGGACCATAAGGGGGCTGGTTGA
ATCGTTCTTGAGTTCCACGAGCCCGTACACCCCAGTGGTTGAGGGCCGGT
TGGTCGATGTCTCCAACAACGCATGA

Coding sequence (CDS) from alignment at tig00000017_pilon:1420503..1421828+

>Gchil920.t1 ID=Gchil920.t1|Name=Gchil920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000017_pilon:1420503..1421828+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAAATGCGATGTTCGAATTTCTGCTGGTGACTTTTCTTTTGGTAC
ACTCTTCTGGACTTTGTTCGATGACGAAATTGCCACCGCAGCCTACAACG
CAATAGGCTATGACATTGCCATCTTCGGCATCGAGGACGTCACGGTCGGC
GTAGATCCCATCTTCAACACTATACGCCATACTCCTCATGTCAACTGGCT
GGGCACCAACATCAACTTGTTAGGGCATCCACCAGGCGTGACTCTTAGAA
AAACGTTGGACAAGGGAGATGCCTGTTTTGTTTCAGCATTGACGCCGCTG
TTGAACACGTTGTACGACTACGAAGAATTCCTTGAGATTGAAGACCCTGT
CAAGGCCATCCAAGATAGTGTATCGGAGTGCAAGAATAAGCAAAATATTG
TTGCCGTGACGCATCTGGGCCTGAGTAGTGACGAGGAGCTTTGCAGAATG
GTTCCGGAGCTGGACTTGGTTATTGGCGGCTTCACCATGGACGACCTCGC
AAAGGATGGCAGCTATCCTCGCCGCGTGGAGCGTGCCGATGGGACCATAT
GTTATGTGGTAACTGCGTTTGCCTTTGGGAGACAACTGGGCTTCTTGGAC
CTAAACTTCAACCAGGGACAGCTGAGCTTTGATGGCTATGGAGTGCTGCC
GCTGGATGGGAGGATTCGGCTAGACCGAGAGGTTCAGCGCGTGATAGACG
GCTTCTCAAGACGGCTGGAGAGGGAAAACCTCGATGTACCGGTAGCGACG
TTAACTGCCGCTATTCCGGACGACTGTGTCGGAAAGGAATGTGCGAGGGG
AAACTTGATTTGTGACACGCTCCTTGATGCAGAAAGTCACGCTGATTTAT
GCATTGTGAACTCAGACTACTCTCGCGGATCACTGAATGAGGGGACAGTG
ACCCGGGGTGATGTAATTGGGTTGGCAACGTTTCCGAACAACCTGTCCGT
GGTCACCATCTCTGGGCACGGCGTGTTGGAGGCTCTCGAGAACGGTCTTT
CGGCACCGCTGGACAGCCCTATCGGGTTTGGTCCATTCCCGCAAGTGGGC
GGGATCGTTGTTAGATTCGACTTGTCGAGACATGTGGGAAGACGAGTGGT
GAGTGTGCACATTAGAGGGCATCCTCTGGATGAGAGAGAGACATACCGCG
TTGCGACTAGCTCGTTCTTGGCATTGATGAATTACGGGTACACATGGGAT
GGGGCGAGACGCATTGAGATCACGCAGAGGACCATAAGGGGGCTGGTTGA
ATCGTTCTTGAGTTCCACGAGCCCGTACACCCCAGTGGTTGAGGGCCGGT
TGGTCGATGTCTCCAACAACGCATGA