Gchil9193.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9193.t1
Unique NameGchil9193.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2430342..2431997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708846.1
Preferred nameATP5A1
PFAMsATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
Max annot lvl2759|Eukaryota
KEGG koko:K02132
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000166,GO:0000275,GO:0001936,GO:0001937,GO:0003674,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0005759,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008144,GO:0008150,GO:0008152,GO:0008285,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009295,GO:0009987,GO:0010594,GO:0010595,GO:0010632,GO:0010634,GO:0010876,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0019915,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0022900,GO:0030334,GO:0030335,GO:0030554,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0033036,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042287,GO:0042288,GO:0042407,GO:0042623,GO:0042625,GO:0042626,GO:0042645,GO:0042776,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043532,GO:0043535,GO:0043536,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045121,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0046933,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051338,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0097159,GO:0097367,GO:0098589,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098805,GO:0098857,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1902769,GO:1990542,GO:2000145,GO:2000147
Evalue3.35e-285
EggNOG OGsCOG0056@1|root,KOG1353@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BiGG ReactioniMM904.YBL099W,iND750.YBL099W
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9193Gchil9193Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2430342..2431997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9193.t1.start1Gchil9193.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2430342..2430344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9193.t1.CDS1Gchil9193.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2430342..2431997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9193.t1.exon1Gchil9193.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2430342..2431997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9193.t1.stop1Gchil9193.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2431995..2431997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9193.t1Gchil9193.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2430342..2431997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9193.t1 ID=Gchil9193.t1|Name=Gchil9193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp
MSPAVMRSVLAGVRAATRSVRAPVAFRAVPIAAIRTSAPSSAAMDPAEVS
SIIEDRIINYQQKIELDEVGRVLSIGDGIARVYGLNNCKAGEMVEFESGL
KGMALNLEVGNCGIVVFGNDREISEGQTCRRTGAIVDVPVGEGMLGRVVD
ALGNPIDGKGPITNVTRERVEVKAPGIMPRMGVHEPMQTGLKAVDALVPI
GRGQRELIIGDRQTGKTAVALDTILNQKVNFDSGDVDKQLYCVYVAVGQK
RSTVAQLAKTLEEAGALKYSIIVAATASDAAPLQFLAPYSGCAIGEYFRD
NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDIFYLHSRLLERA
AKMNKDVGGGSLTALPIIETQAGDVSAYVPTNVISITDGQVFLETELFYK
GQRPAINVGLSVSRVGSAAQMKAMKQVAGSMKLELAQHREVAAFAQFGSD
LDASTQQMLNRGDRLNELLKQDQFVPMPPEEQVVTLYAGVRGFLDKMPVG
KIKEFEAAYLKYMRANHAALLSTIRKEGSVSDATDGALKNALTTFLDTFE
A*
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spliced messenger RNA

>Gchil9193.t1 ID=Gchil9193.t1|Name=Gchil9193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004370_pilon:2430342..2431997+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGGCCGTCATGCGTTCCGTTTTGGCCGGCGTGCGCGCCGCCAC
TCGCTCTGTCCGCGCCCCTGTTGCCTTCCGTGCCGTTCCGATCGCCGCCA
TACGCACATCCGCCCCCTCGTCGGCCGCCATGGATCCCGCAGAGGTGTCG
TCCATCATCGAGGATCGAATCATCAACTATCAACAGAAGATCGAGCTCGA
TGAGGTTGGCAGGGTGCTCTCCATTGGCGATGGTATTGCGCGTGTCTACG
GCCTCAACAATTGCAAGGCCGGCGAAATGGTTGAATTTGAGTCCGGTCTC
AAGGGCATGGCCCTCAACCTCGAGGTCGGCAACTGTGGTATTGTCGTCTT
CGGCAATGATCGCGAAATCTCCGAGGGGCAGACCTGCCGTCGTACCGGAG
CTATCGTTGATGTTCCCGTGGGCGAGGGTATGCTTGGTCGCGTCGTCGAC
GCCCTTGGAAACCCAATTGACGGAAAGGGTCCCATCACCAACGTTACCCG
TGAACGTGTTGAGGTCAAGGCTCCCGGCATCATGCCGCGTATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCTGTTGATGCCCTTGTCCCCATC
GGTCGTGGTCAGCGTGAACTCATAATTGGAGATCGCCAGACCGGAAAGAC
CGCCGTCGCCTTGGATACTATCCTCAACCAGAAAGTCAACTTTGACAGTG
GTGACGTCGACAAGCAGTTGTACTGTGTGTATGTCGCCGTCGGTCAGAAG
CGATCCACCGTTGCTCAGCTTGCCAAGACTCTAGAGGAGGCGGGTGCCCT
CAAGTATTCTATCATTGTCGCCGCTACCGCATCCGATGCCGCCCCGCTTC
AGTTCCTTGCCCCATACTCGGGATGTGCAATTGGCGAGTATTTCCGTGAC
AATGGCAAACATGCGCTTATCATTTACGACGATCTGTCTAAGCAGGCCGT
CGCGTATCGGCAGATGTCCTTGCTTCTTCGCCGACCCCCAGGTCGTGAGG
CCTACCCTGGTGATATTTTCTATCTTCATTCACGTTTGTTGGAGCGAGCT
GCAAAGATGAACAAGGACGTCGGTGGTGGCTCTCTCACCGCTTTGCCCAT
CATTGAGACCCAGGCCGGGGATGTGTCTGCGTACGTGCCCACCAATGTGA
TTTCAATTACCGATGGTCAGGTGTTTTTGGAAACTGAACTCTTCTACAAG
GGCCAACGACCGGCCATTAACGTTGGTCTCTCCGTGTCTCGAGTGGGTTC
TGCCGCCCAGATGAAGGCTATGAAGCAAGTGGCTGGTTCAATGAAGCTTG
AGTTGGCTCAACACAGAGAAGTGGCTGCCTTTGCTCAGTTCGGCTCAGAT
CTTGATGCCTCAACCCAACAAATGCTTAACCGCGGTGATCGCTTGAACGA
GTTGTTGAAGCAAGATCAATTCGTGCCGATGCCCCCTGAGGAGCAAGTGG
TCACCTTGTATGCTGGTGTGCGTGGATTCCTTGACAAGATGCCCGTCGGT
AAGATTAAGGAATTCGAAGCAGCCTACTTGAAGTACATGCGTGCCAATCA
TGCTGCATTACTCTCTACCATCAGAAAGGAAGGCAGCGTGTCTGACGCCA
CAGATGGTGCTCTGAAGAATGCACTCACCACGTTTTTGGACACATTTGAA
GCTTAG
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protein sequence of Gchil9193.t1

>Gchil9193.t1 ID=Gchil9193.t1|Name=Gchil9193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=552bp
MSPAVMRSVLAGVRAATRSVRAPVAFRAVPIAAIRTSAPSSAAMDPAEVS
SIIEDRIINYQQKIELDEVGRVLSIGDGIARVYGLNNCKAGEMVEFESGL
KGMALNLEVGNCGIVVFGNDREISEGQTCRRTGAIVDVPVGEGMLGRVVD
ALGNPIDGKGPITNVTRERVEVKAPGIMPRMGVHEPMQTGLKAVDALVPI
GRGQRELIIGDRQTGKTAVALDTILNQKVNFDSGDVDKQLYCVYVAVGQK
RSTVAQLAKTLEEAGALKYSIIVAATASDAAPLQFLAPYSGCAIGEYFRD
NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDIFYLHSRLLERA
AKMNKDVGGGSLTALPIIETQAGDVSAYVPTNVISITDGQVFLETELFYK
GQRPAINVGLSVSRVGSAAQMKAMKQVAGSMKLELAQHREVAAFAQFGSD
LDASTQQMLNRGDRLNELLKQDQFVPMPPEEQVVTLYAGVRGFLDKMPVG
KIKEFEAAYLKYMRANHAALLSTIRKEGSVSDATDGALKNALTTFLDTFE
A*
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mRNA from alignment at tig00004370_pilon:2430342..2431997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9193.t1 ID=Gchil9193.t1|Name=Gchil9193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004370_pilon:2430342..2431997+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCGGCCGTCATGCGTTCCGTTTTGGCCGGCGTGCGCGCCGCCAC
TCGCTCTGTCCGCGCCCCTGTTGCCTTCCGTGCCGTTCCGATCGCCGCCA
TACGCACATCCGCCCCCTCGTCGGCCGCCATGGATCCCGCAGAGGTGTCG
TCCATCATCGAGGATCGAATCATCAACTATCAACAGAAGATCGAGCTCGA
TGAGGTTGGCAGGGTGCTCTCCATTGGCGATGGTATTGCGCGTGTCTACG
GCCTCAACAATTGCAAGGCCGGCGAAATGGTTGAATTTGAGTCCGGTCTC
AAGGGCATGGCCCTCAACCTCGAGGTCGGCAACTGTGGTATTGTCGTCTT
CGGCAATGATCGCGAAATCTCCGAGGGGCAGACCTGCCGTCGTACCGGAG
CTATCGTTGATGTTCCCGTGGGCGAGGGTATGCTTGGTCGCGTCGTCGAC
GCCCTTGGAAACCCAATTGACGGAAAGGGTCCCATCACCAACGTTACCCG
TGAACGTGTTGAGGTCAAGGCTCCCGGCATCATGCCGCGTATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCTGTTGATGCCCTTGTCCCCATC
GGTCGTGGTCAGCGTGAACTCATAATTGGAGATCGCCAGACCGGAAAGAC
CGCCGTCGCCTTGGATACTATCCTCAACCAGAAAGTCAACTTTGACAGTG
GTGACGTCGACAAGCAGTTGTACTGTGTGTATGTCGCCGTCGGTCAGAAG
CGATCCACCGTTGCTCAGCTTGCCAAGACTCTAGAGGAGGCGGGTGCCCT
CAAGTATTCTATCATTGTCGCCGCTACCGCATCCGATGCCGCCCCGCTTC
AGTTCCTTGCCCCATACTCGGGATGTGCAATTGGCGAGTATTTCCGTGAC
AATGGCAAACATGCGCTTATCATTTACGACGATCTGTCTAAGCAGGCCGT
CGCGTATCGGCAGATGTCCTTGCTTCTTCGCCGACCCCCAGGTCGTGAGG
CCTACCCTGGTGATATTTTCTATCTTCATTCACGTTTGTTGGAGCGAGCT
GCAAAGATGAACAAGGACGTCGGTGGTGGCTCTCTCACCGCTTTGCCCAT
CATTGAGACCCAGGCCGGGGATGTGTCTGCGTACGTGCCCACCAATGTGA
TTTCAATTACCGATGGTCAGGTGTTTTTGGAAACTGAACTCTTCTACAAG
GGCCAACGACCGGCCATTAACGTTGGTCTCTCCGTGTCTCGAGTGGGTTC
TGCCGCCCAGATGAAGGCTATGAAGCAAGTGGCTGGTTCAATGAAGCTTG
AGTTGGCTCAACACAGAGAAGTGGCTGCCTTTGCTCAGTTCGGCTCAGAT
CTTGATGCCTCAACCCAACAAATGCTTAACCGCGGTGATCGCTTGAACGA
GTTGTTGAAGCAAGATCAATTCGTGCCGATGCCCCCTGAGGAGCAAGTGG
TCACCTTGTATGCTGGTGTGCGTGGATTCCTTGACAAGATGCCCGTCGGT
AAGATTAAGGAATTCGAAGCAGCCTACTTGAAGTACATGCGTGCCAATCA
TGCTGCATTACTCTCTACCATCAGAAAGGAAGGCAGCGTGTCTGACGCCA
CAGATGGTGCTCTGAAGAATGCACTCACCACGTTTTTGGACACATTTGAA
GCTTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:2430342..2431997+

>Gchil9193.t1 ID=Gchil9193.t1|Name=Gchil9193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00004370_pilon:2430342..2431997+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCGGCCGTCATGCGTTCCGTTTTGGCCGGCGTGCGCGCCGCCAC
TCGCTCTGTCCGCGCCCCTGTTGCCTTCCGTGCCGTTCCGATCGCCGCCA
TACGCACATCCGCCCCCTCGTCGGCCGCCATGGATCCCGCAGAGGTGTCG
TCCATCATCGAGGATCGAATCATCAACTATCAACAGAAGATCGAGCTCGA
TGAGGTTGGCAGGGTGCTCTCCATTGGCGATGGTATTGCGCGTGTCTACG
GCCTCAACAATTGCAAGGCCGGCGAAATGGTTGAATTTGAGTCCGGTCTC
AAGGGCATGGCCCTCAACCTCGAGGTCGGCAACTGTGGTATTGTCGTCTT
CGGCAATGATCGCGAAATCTCCGAGGGGCAGACCTGCCGTCGTACCGGAG
CTATCGTTGATGTTCCCGTGGGCGAGGGTATGCTTGGTCGCGTCGTCGAC
GCCCTTGGAAACCCAATTGACGGAAAGGGTCCCATCACCAACGTTACCCG
TGAACGTGTTGAGGTCAAGGCTCCCGGCATCATGCCGCGTATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCTGTTGATGCCCTTGTCCCCATC
GGTCGTGGTCAGCGTGAACTCATAATTGGAGATCGCCAGACCGGAAAGAC
CGCCGTCGCCTTGGATACTATCCTCAACCAGAAAGTCAACTTTGACAGTG
GTGACGTCGACAAGCAGTTGTACTGTGTGTATGTCGCCGTCGGTCAGAAG
CGATCCACCGTTGCTCAGCTTGCCAAGACTCTAGAGGAGGCGGGTGCCCT
CAAGTATTCTATCATTGTCGCCGCTACCGCATCCGATGCCGCCCCGCTTC
AGTTCCTTGCCCCATACTCGGGATGTGCAATTGGCGAGTATTTCCGTGAC
AATGGCAAACATGCGCTTATCATTTACGACGATCTGTCTAAGCAGGCCGT
CGCGTATCGGCAGATGTCCTTGCTTCTTCGCCGACCCCCAGGTCGTGAGG
CCTACCCTGGTGATATTTTCTATCTTCATTCACGTTTGTTGGAGCGAGCT
GCAAAGATGAACAAGGACGTCGGTGGTGGCTCTCTCACCGCTTTGCCCAT
CATTGAGACCCAGGCCGGGGATGTGTCTGCGTACGTGCCCACCAATGTGA
TTTCAATTACCGATGGTCAGGTGTTTTTGGAAACTGAACTCTTCTACAAG
GGCCAACGACCGGCCATTAACGTTGGTCTCTCCGTGTCTCGAGTGGGTTC
TGCCGCCCAGATGAAGGCTATGAAGCAAGTGGCTGGTTCAATGAAGCTTG
AGTTGGCTCAACACAGAGAAGTGGCTGCCTTTGCTCAGTTCGGCTCAGAT
CTTGATGCCTCAACCCAACAAATGCTTAACCGCGGTGATCGCTTGAACGA
GTTGTTGAAGCAAGATCAATTCGTGCCGATGCCCCCTGAGGAGCAAGTGG
TCACCTTGTATGCTGGTGTGCGTGGATTCCTTGACAAGATGCCCGTCGGT
AAGATTAAGGAATTCGAAGCAGCCTACTTGAAGTACATGCGTGCCAATCA
TGCTGCATTACTCTCTACCATCAGAAAGGAAGGCAGCGTGTCTGACGCCA
CAGATGGTGCTCTGAAGAATGCACTCACCACGTTTTTGGACACATTTGAA
GCTTAG
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