Gchil9190.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9190.t1
Unique NameGchil9190.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2392910..2393701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9190Gchil9190Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2392910..2393701 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9190.t1.start1Gchil9190.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2392910..2392912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9190.t1.CDS1Gchil9190.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2392910..2393701 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9190.t1.exon1Gchil9190.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2392910..2393701 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9190.t1.stop1Gchil9190.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2393699..2393701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9190.t1Gchil9190.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2392910..2393701 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9190.t1 ID=Gchil9190.t1|Name=Gchil9190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp
MGVLRVNTVLVVVGLTVVLCAAAPARSRHTIRQSYSTNYANGGNGGNGGS
GGSGGRGGRGGNGGNSFAFGNNVVGGNGGKGGNGGGGSRPGAGGQGGLSI
SAFGADGADGQPGAFSGFGGFGASGANGANGANGANAAFGGNGGNGGNGG
DSVVFSGNNGNNGNNGGATLQAASAASGGQPQLQAASLGVGAFGSNNNAF
GPSAFGSNNNAFGSGAFGKGAFSKGAFGKGAYRGPYYQPYPQRFPRLYYV
WNSYLNRYIPQWW*
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spliced messenger RNA

>Gchil9190.t1 ID=Gchil9190.t1|Name=Gchil9190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00004370_pilon:2392910..2393701+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTGCTTCGCGTGAATACGGTGCTGGTCGTAGTGGGACTGACGGT
AGTGCTGTGCGCTGCGGCACCGGCACGGTCGCGCCACACGATACGACAAT
CGTACTCGACCAACTATGCGAACGGTGGCAACGGTGGCAACGGTGGTAGC
GGCGGCAGCGGAGGAAGAGGAGGAAGAGGCGGTAACGGCGGCAACTCGTT
TGCGTTCGGCAACAACGTGGTGggcggcaacggcggcaaaggcggcaacg
gcggcggcggcagtcgccccggcgctggcggcCAGGGAGGGCTGTCGATC
AGCGCGTTCGGTGCCGACGGTGCCGATGGACAGCCCGGCGCCTTTAGCGG
CTTTGGCGGCTTTGGCGCATCTGGTGCTAACGGTGCTAACGGCGCCAACG
GCGCCAACGCTGCGTTCGGGGGCAACGGCGGGAATGGCGGGAATGGCGGA
GACTCGGTGGTGTTTTCTGGTAACAACGGCAACAACGGCAACAACGGCGG
CGCCACGCTGCAGGCGGCCTCCGCCGCGTCCGGCGGACAACCGCAGTTGC
AGGCGGCGTCGCTGGGCGTCGGCGCGTTTGGCAGTAATAACAACGCGTTC
GGGCCCAGTGCGTTTGGTAGCAATAACAACGCGTTCGGGTCGGGCGCGTT
TGGCAAGGGCGCGTTTAGCAAGGGCGCGTTTGGCAAGGGCGCTTATCGGG
GCCCGTATTACCAACCGTATCCGCAGAGATTCCCGAGATTATACTACGTG
TGGAACTCGTACTTGAACAGGTACATACCACAATGGTGGTGA
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protein sequence of Gchil9190.t1

>Gchil9190.t1 ID=Gchil9190.t1|Name=Gchil9190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=264bp
MGVLRVNTVLVVVGLTVVLCAAAPARSRHTIRQSYSTNYANGGNGGNGGS
GGSGGRGGRGGNGGNSFAFGNNVVGGNGGKGGNGGGGSRPGAGGQGGLSI
SAFGADGADGQPGAFSGFGGFGASGANGANGANGANAAFGGNGGNGGNGG
DSVVFSGNNGNNGNNGGATLQAASAASGGQPQLQAASLGVGAFGSNNNAF
GPSAFGSNNNAFGSGAFGKGAFSKGAFGKGAYRGPYYQPYPQRFPRLYYV
WNSYLNRYIPQWW*
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mRNA from alignment at tig00004370_pilon:2392910..2393701+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9190.t1 ID=Gchil9190.t1|Name=Gchil9190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00004370_pilon:2392910..2393701+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGTGCTTCGCGTGAATACGGTGCTGGTCGTAGTGGGACTGACGGT
AGTGCTGTGCGCTGCGGCACCGGCACGGTCGCGCCACACGATACGACAAT
CGTACTCGACCAACTATGCGAACGGTGGCAACGGTGGCAACGGTGGTAGC
GGCGGCAGCGGAGGAAGAGGAGGAAGAGGCGGTAACGGCGGCAACTCGTT
TGCGTTCGGCAACAACGTGGTGggcggcaacggcggcaaaggcggcaacg
gcggcggcggcagtcgccccggcgctggcggcCAGGGAGGGCTGTCGATC
AGCGCGTTCGGTGCCGACGGTGCCGATGGACAGCCCGGCGCCTTTAGCGG
CTTTGGCGGCTTTGGCGCATCTGGTGCTAACGGTGCTAACGGCGCCAACG
GCGCCAACGCTGCGTTCGGGGGCAACGGCGGGAATGGCGGGAATGGCGGA
GACTCGGTGGTGTTTTCTGGTAACAACGGCAACAACGGCAACAACGGCGG
CGCCACGCTGCAGGCGGCCTCCGCCGCGTCCGGCGGACAACCGCAGTTGC
AGGCGGCGTCGCTGGGCGTCGGCGCGTTTGGCAGTAATAACAACGCGTTC
GGGCCCAGTGCGTTTGGTAGCAATAACAACGCGTTCGGGTCGGGCGCGTT
TGGCAAGGGCGCGTTTAGCAAGGGCGCGTTTGGCAAGGGCGCTTATCGGG
GCCCGTATTACCAACCGTATCCGCAGAGATTCCCGAGATTATACTACGTG
TGGAACTCGTACTTGAACAGGTACATACCACAATGGTGGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:2392910..2393701+

>Gchil9190.t1 ID=Gchil9190.t1|Name=Gchil9190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00004370_pilon:2392910..2393701+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGTGCTTCGCGTGAATACGGTGCTGGTCGTAGTGGGACTGACGGT
AGTGCTGTGCGCTGCGGCACCGGCACGGTCGCGCCACACGATACGACAAT
CGTACTCGACCAACTATGCGAACGGTGGCAACGGTGGCAACGGTGGTAGC
GGCGGCAGCGGAGGAAGAGGAGGAAGAGGCGGTAACGGCGGCAACTCGTT
TGCGTTCGGCAACAACGTGGTGggcggcaacggcggcaaaggcggcaacg
gcggcggcggcagtcgccccggcgctggcggcCAGGGAGGGCTGTCGATC
AGCGCGTTCGGTGCCGACGGTGCCGATGGACAGCCCGGCGCCTTTAGCGG
CTTTGGCGGCTTTGGCGCATCTGGTGCTAACGGTGCTAACGGCGCCAACG
GCGCCAACGCTGCGTTCGGGGGCAACGGCGGGAATGGCGGGAATGGCGGA
GACTCGGTGGTGTTTTCTGGTAACAACGGCAACAACGGCAACAACGGCGG
CGCCACGCTGCAGGCGGCCTCCGCCGCGTCCGGCGGACAACCGCAGTTGC
AGGCGGCGTCGCTGGGCGTCGGCGCGTTTGGCAGTAATAACAACGCGTTC
GGGCCCAGTGCGTTTGGTAGCAATAACAACGCGTTCGGGTCGGGCGCGTT
TGGCAAGGGCGCGTTTAGCAAGGGCGCGTTTGGCAAGGGCGCTTATCGGG
GCCCGTATTACCAACCGTATCCGCAGAGATTCCCGAGATTATACTACGTG
TGGAACTCGTACTTGAACAGGTACATACCACAATGGTGGTGA
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