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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005706067.1 |
| Preferred name | CPSF2 |
| PFAMs | Beta-Casp,CPSF100_C,Lactamase_B_6,RMMBL |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K14402,ko:K17606 |
| KEGG Pathway | ko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140 |
| GOs | GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 |
| Evalue | 1.23e-141 |
| EggNOG OGs | COG1236@1|root,KOG1135@2759|Eukaryota |
| Description | mRNA cleavage |
| COG category | J |
| BRITE | ko00000,ko00001,ko01009,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil9187.t1 ID=Gchil9187.t1|Name=Gchil9187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=815bp MGVSVQITPIYGSYTTSHAISHLLTIDGFNILLDIGWDISFNHDNLENLR TIAPKVNAILLSHADISHLGALPYAFRHLNLNAPVFATLPVWRMGHMFMY NAYLSRSAQSAFSSFNLDDVDSAFELEDHFHLLKYQQRHPLTAYGADKVV ITPHAAGHMLGGAIWSIQKETETILYAVHFNHRRERHLNPTTLNSFSRPS HLIISATRADSKTESTKPSALVDLIRSTTSRSGNVLIPVDTAGRIIELAI LLDEYWQNESFLRSATLVILHDLSVRTFEFARSMIEWMSDEVVRRFDVSR DNIFDMKHVKLLQSVKQLDQFSGPLVVLASSVSLEVGASRHLFTQWCSQA QNSVILVDRPPPNTLYATLYEHVTKSEQKKASAEPFQIPVVLRRKEYLKG EELQKWLESERLKKEAVMEQKRKEEDERRKEELKAIEKANNEKVASEKEE KREAQKESKGGENEAKRANGDVVVMGDDEKILEMMREYDARPKRARLGTF PFQVAPRPSWDEYGQIVDTSCFMIGEDPGEGAPLKESEEKKQGEAMTDAD LIREEVPAEYIEEAVTLNVACKLHIVDFSGLCDGDSLKRLMKEVEPRHVT LAAGSEEETNHFKQYLESQVFGGNRVQSFEHSRIEGALVAAPRDMESVDI TSRSSVWRFSLQDTLIGSLQWESVNLSHIAFVDAVVMAERDASGKQVLNV NDSRKEEDMGVMMDVGERGAGVEPGKTTEKGENSNGHSTIMIGTVMLNQL LDKLSKAGLKAEFAGGALCVQNVDTGVVVLVKKTAAQRIALEGAFSEEYV KIRDLLYEELIIPR* back to topspliced messenger RNA >Gchil9187.t1 ID=Gchil9187.t1|Name=Gchil9187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at tig00004370_pilon:2384524..2386968+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGCGTCTCCGTTCAAATTACGCCCATATATGGCTCGTACACCACATC GCACGCCATCTCACACTTGCTCACAATTGATGGTTTCAATATTCTTCTTG ACATCGGTTGGGACATCTCTTTCAACCATGATAACTTGGAAAACCTACGA ACGATCGCTCCGAAAGTCAACGCCATCTTGCTTTCGCACGCGGACATCTC CCATCTTGGCGCGCTTCCCTATGCGTTCCGTCATTTGAATCTAAACGCCC CAGTGTTTGCAACTCTACCAGTATGGCGCATGGGTCACATGTTTATGTAC AACGCGTATCTGTCCAGATCTGCCCAAAGTGCGTTTTCATCGTTCAACTT GGATGACGTCGACTCTGCCTTTGAACTCGAGGACCATTTTCATCTGCTGA AATATCAACAACGCCATCCTCTTACCGCATACGGTGCAGACAAAGTCGTG ATTACGCCTCATGCGGCGGGTCACATGCTGGGAGGTGCCATTTGGAGCAT TCAGAAGGAAACAGAGACCATCTTATACGCAGTACACTTTAATCATCGTC GCGAACGCCACCTCAATCCTACAACGCTGAACTCGTTCTCTAGACCCAGC CATCTAATAATCTCAGCAACTCGTGCGGACAGTAAGACAGAATCAACCAA ACCTTCCGCACTTGTAGACCTTATTCGCTCTACCACTTCGCGATCGGGAA ACGTGCTGATTCCAGTTGATACGGCTGGCCGAATCATAGAACTGGCCATT CTACTGGACGAATACTGGCAGAATGAAAGCTTTCTACGCTCTGCGACGCT GGTCATCTTGCATGACCTCTCGGTTCGTACTTTTGAGTTTGCGAGAAGTA TGATTGAATGGATGAGTGACGAGGTAGTAAGAAGATTTGATGTGTCGCGA GATAACATCTTTGATATGAAGCATGTAAAGTTGTTACAATCTGTTAAGCA GTTGGACCAATTTTCAGGACCGCTTGTCGTTCTAGCCTCCTCCGTGTCTT TAGAGGTGGGTGCCTCGCGTCATCTCTTCACGCAGTGGTGCTCGCAAGCT CAGAATTCAGTCATTCTCGTGGACCGACCACCGCCAAATACATTGTACGC AACTTTATACGAACACGTCACCAAGAGTGAGCAGAAGAAAGCGTCCGCGG AACCTTTTCAAATCCCTGTCGTACTCCGGAGAAAGGAGTATCTGAAAGGT GAAGAACTGCAGAAATGGCTCGAAAGCGAGAGGCTAAAAAAAGAAGCGGT GATGGAGCAAAAACGGAAAGAAGAAGACGAACGAAGGAAGGAGGAGCTTA AAGCAATTGAAAAGGCAAACAATGAAAAGGTTGCATCCGAAAAAGAGGAA AAAAGGGAGGCGCAAAAAGAAAGCAAGGGAGGGGAGAATGAAGCCAAACG TGCAAATGGTGATGTGGTGGTGATGGGAGACGATGAGAAGATTTTAGAAA TGATGCGGGAATACGATGCTCGCCCGAAGAGAGCTAGGCTGGGTACATTT CCATTCCAAGTGGCGCCGCGACCTTCATGGGACGAGTACGGGCAGATTGT AGACACTAGCTGCTTCATGATCGGGGAAGATCCCGGGGAGGGGGCGCCGC TCAAAGAGTCGGAAGAGAAGAAACAAGGGGAGGCGATGACTGACGCCGAT CTCATTCGAGAGGAGGTACCCGCAGAGTACATTGAGGAAGCTGTAACTCT AAATGTGGCGTGTAAACTGCATATTGTAGACTTTTCGGGCTTGTGTGATG GAGATTCTCTGAAGCGTTTGATGAAGGAAGTAGAGCCGCGACACGTGACG CTTGCTGCTGGCAGTGAGGAGGAGACGAATCACTTCAAGCAGTATTTGGA ATCGCAAGTTTTCGGGGGTAATCGGGTGCAGAGCTTCGAGCACAGCAGAA TTGAGGGTGCGTTGGTGGCAGCACCTCGTGACATGGAAAGTGTGGACATT ACAAGCCGCAGTTCGGTGTGGCGGTTCTCGTTGCAGGACACGCTGATCGG GAGTCTACAGTGGGAAAGCGTGAATCTGTCGCACATAGCATTTGTGGATG CCGTGGTGATGGCGGAACGAGACGCAAGCGGGAAGCAAGTGTTGAACGTG AACGACTCGCGAAAAGAAGAGGACATGGGGGTGATGATGGATGTTGGGGA GAGGGGCGCGGGGGTGGAGCCGGGCAAGACGACGGAGAAAGGGGAAAATA GCAACGGTCATAGCACAATCATGATTGGGACGGTGATGCTGAATCAACTG CTGGACAAGCTGAGCAAGGCCGGGCTAAAGGCGGAGTTTGCCGGCGGGGC GCTGTGTGTGCAAAATGTGGACACTGGAGTGGTGGTGCTGGTGAAAAAAA CAGCGGCGCAGCGAATTGCGTTGGAAGGGGCTTTCTCGGAGGAATACGTG AAGATTCGAGACTTGCTGTATGAGGAACTGATCATTCCGAGATAA back to topprotein sequence of Gchil9187.t1 >Gchil9187.t1 ID=Gchil9187.t1|Name=Gchil9187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=815bp
MGVSVQITPIYGSYTTSHAISHLLTIDGFNILLDIGWDISFNHDNLENLR TIAPKVNAILLSHADISHLGALPYAFRHLNLNAPVFATLPVWRMGHMFMY NAYLSRSAQSAFSSFNLDDVDSAFELEDHFHLLKYQQRHPLTAYGADKVV ITPHAAGHMLGGAIWSIQKETETILYAVHFNHRRERHLNPTTLNSFSRPS HLIISATRADSKTESTKPSALVDLIRSTTSRSGNVLIPVDTAGRIIELAI LLDEYWQNESFLRSATLVILHDLSVRTFEFARSMIEWMSDEVVRRFDVSR DNIFDMKHVKLLQSVKQLDQFSGPLVVLASSVSLEVGASRHLFTQWCSQA QNSVILVDRPPPNTLYATLYEHVTKSEQKKASAEPFQIPVVLRRKEYLKG EELQKWLESERLKKEAVMEQKRKEEDERRKEELKAIEKANNEKVASEKEE KREAQKESKGGENEAKRANGDVVVMGDDEKILEMMREYDARPKRARLGTF PFQVAPRPSWDEYGQIVDTSCFMIGEDPGEGAPLKESEEKKQGEAMTDAD LIREEVPAEYIEEAVTLNVACKLHIVDFSGLCDGDSLKRLMKEVEPRHVT LAAGSEEETNHFKQYLESQVFGGNRVQSFEHSRIEGALVAAPRDMESVDI TSRSSVWRFSLQDTLIGSLQWESVNLSHIAFVDAVVMAERDASGKQVLNV NDSRKEEDMGVMMDVGERGAGVEPGKTTEKGENSNGHSTIMIGTVMLNQL LDKLSKAGLKAEFAGGALCVQNVDTGVVVLVKKTAAQRIALEGAFSEEYV KIRDLLYEELIIPR* back to topmRNA from alignment at tig00004370_pilon:2384524..2386968+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil9187.t1 ID=Gchil9187.t1|Name=Gchil9187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at tig00004370_pilon:2384524..2386968+ (Gracilaria chilensis NLEC103_M9 male) ATGGGCGTCTCCGTTCAAATTACGCCCATATATGGCTCGTACACCACATC
GCACGCCATCTCACACTTGCTCACAATTGATGGTTTCAATATTCTTCTTG
ACATCGGTTGGGACATCTCTTTCAACCATGATAACTTGGAAAACCTACGA
ACGATCGCTCCGAAAGTCAACGCCATCTTGCTTTCGCACGCGGACATCTC
CCATCTTGGCGCGCTTCCCTATGCGTTCCGTCATTTGAATCTAAACGCCC
CAGTGTTTGCAACTCTACCAGTATGGCGCATGGGTCACATGTTTATGTAC
AACGCGTATCTGTCCAGATCTGCCCAAAGTGCGTTTTCATCGTTCAACTT
GGATGACGTCGACTCTGCCTTTGAACTCGAGGACCATTTTCATCTGCTGA
AATATCAACAACGCCATCCTCTTACCGCATACGGTGCAGACAAAGTCGTG
ATTACGCCTCATGCGGCGGGTCACATGCTGGGAGGTGCCATTTGGAGCAT
TCAGAAGGAAACAGAGACCATCTTATACGCAGTACACTTTAATCATCGTC
GCGAACGCCACCTCAATCCTACAACGCTGAACTCGTTCTCTAGACCCAGC
CATCTAATAATCTCAGCAACTCGTGCGGACAGTAAGACAGAATCAACCAA
ACCTTCCGCACTTGTAGACCTTATTCGCTCTACCACTTCGCGATCGGGAA
ACGTGCTGATTCCAGTTGATACGGCTGGCCGAATCATAGAACTGGCCATT
CTACTGGACGAATACTGGCAGAATGAAAGCTTTCTACGCTCTGCGACGCT
GGTCATCTTGCATGACCTCTCGGTTCGTACTTTTGAGTTTGCGAGAAGTA
TGATTGAATGGATGAGTGACGAGGTAGTAAGAAGATTTGATGTGTCGCGA
GATAACATCTTTGATATGAAGCATGTAAAGTTGTTACAATCTGTTAAGCA
GTTGGACCAATTTTCAGGACCGCTTGTCGTTCTAGCCTCCTCCGTGTCTT
TAGAGGTGGGTGCCTCGCGTCATCTCTTCACGCAGTGGTGCTCGCAAGCT
CAGAATTCAGTCATTCTCGTGGACCGACCACCGCCAAATACATTGTACGC
AACTTTATACGAACACGTCACCAAGAGTGAGCAGAAGAAAGCGTCCGCGG
AACCTTTTCAAATCCCTGTCGTACTCCGGAGAAAGGAGTATCTGAAAGGT
GAAGAACTGCAGAAATGGCTCGAAAGCGAGAGGCTAAAAAAAGAAGCGGT
GATGGAGCAAAAACGGAAAGAAGAAGACGAACGAAGGAAGGAGGAGCTTA
AAGCAATTGAAAAGGCAAACAATGAAAAGGTTGCATCCGAAAAAGAGGAA
AAAAGGGAGGCGCAAAAAGAAAGCAAGGGAGGGGAGAATGAAGCCAAACG
TGCAAATGGTGATGTGGTGGTGATGGGAGACGATGAGAAGATTTTAGAAA
TGATGCGGGAATACGATGCTCGCCCGAAGAGAGCTAGGCTGGGTACATTT
CCATTCCAAGTGGCGCCGCGACCTTCATGGGACGAGTACGGGCAGATTGT
AGACACTAGCTGCTTCATGATCGGGGAAGATCCCGGGGAGGGGGCGCCGC
TCAAAGAGTCGGAAGAGAAGAAACAAGGGGAGGCGATGACTGACGCCGAT
CTCATTCGAGAGGAGGTACCCGCAGAGTACATTGAGGAAGCTGTAACTCT
AAATGTGGCGTGTAAACTGCATATTGTAGACTTTTCGGGCTTGTGTGATG
GAGATTCTCTGAAGCGTTTGATGAAGGAAGTAGAGCCGCGACACGTGACG
CTTGCTGCTGGCAGTGAGGAGGAGACGAATCACTTCAAGCAGTATTTGGA
ATCGCAAGTTTTCGGGGGTAATCGGGTGCAGAGCTTCGAGCACAGCAGAA
TTGAGGGTGCGTTGGTGGCAGCACCTCGTGACATGGAAAGTGTGGACATT
ACAAGCCGCAGTTCGGTGTGGCGGTTCTCGTTGCAGGACACGCTGATCGG
GAGTCTACAGTGGGAAAGCGTGAATCTGTCGCACATAGCATTTGTGGATG
CCGTGGTGATGGCGGAACGAGACGCAAGCGGGAAGCAAGTGTTGAACGTG
AACGACTCGCGAAAAGAAGAGGACATGGGGGTGATGATGGATGTTGGGGA
GAGGGGCGCGGGGGTGGAGCCGGGCAAGACGACGGAGAAAGGGGAAAATA
GCAACGGTCATAGCACAATCATGATTGGGACGGTGATGCTGAATCAACTG
CTGGACAAGCTGAGCAAGGCCGGGCTAAAGGCGGAGTTTGCCGGCGGGGC
GCTGTGTGTGCAAAATGTGGACACTGGAGTGGTGGTGCTGGTGAAAAAAA
CAGCGGCGCAGCGAATTGCGTTGGAAGGGGCTTTCTCGGAGGAATACGTG
AAGATTCGAGACTTGCTGTATGAGGAACTGATCATTCCGAGATAA back to topCoding sequence (CDS) from alignment at tig00004370_pilon:2384524..2386968+ >Gchil9187.t1 ID=Gchil9187.t1|Name=Gchil9187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2445bp|location=Sequence derived from alignment at tig00004370_pilon:2384524..2386968+ (Gracilaria chilensis NLEC103_M9 male) ATGGGCGTCTCCGTTCAAATTACGCCCATATATGGCTCGTACACCACATC GCACGCCATCTCACACTTGCTCACAATTGATGGTTTCAATATTCTTCTTG ACATCGGTTGGGACATCTCTTTCAACCATGATAACTTGGAAAACCTACGA ACGATCGCTCCGAAAGTCAACGCCATCTTGCTTTCGCACGCGGACATCTC CCATCTTGGCGCGCTTCCCTATGCGTTCCGTCATTTGAATCTAAACGCCC CAGTGTTTGCAACTCTACCAGTATGGCGCATGGGTCACATGTTTATGTAC AACGCGTATCTGTCCAGATCTGCCCAAAGTGCGTTTTCATCGTTCAACTT GGATGACGTCGACTCTGCCTTTGAACTCGAGGACCATTTTCATCTGCTGA AATATCAACAACGCCATCCTCTTACCGCATACGGTGCAGACAAAGTCGTG ATTACGCCTCATGCGGCGGGTCACATGCTGGGAGGTGCCATTTGGAGCAT TCAGAAGGAAACAGAGACCATCTTATACGCAGTACACTTTAATCATCGTC GCGAACGCCACCTCAATCCTACAACGCTGAACTCGTTCTCTAGACCCAGC CATCTAATAATCTCAGCAACTCGTGCGGACAGTAAGACAGAATCAACCAA ACCTTCCGCACTTGTAGACCTTATTCGCTCTACCACTTCGCGATCGGGAA ACGTGCTGATTCCAGTTGATACGGCTGGCCGAATCATAGAACTGGCCATT CTACTGGACGAATACTGGCAGAATGAAAGCTTTCTACGCTCTGCGACGCT GGTCATCTTGCATGACCTCTCGGTTCGTACTTTTGAGTTTGCGAGAAGTA TGATTGAATGGATGAGTGACGAGGTAGTAAGAAGATTTGATGTGTCGCGA GATAACATCTTTGATATGAAGCATGTAAAGTTGTTACAATCTGTTAAGCA GTTGGACCAATTTTCAGGACCGCTTGTCGTTCTAGCCTCCTCCGTGTCTT TAGAGGTGGGTGCCTCGCGTCATCTCTTCACGCAGTGGTGCTCGCAAGCT CAGAATTCAGTCATTCTCGTGGACCGACCACCGCCAAATACATTGTACGC AACTTTATACGAACACGTCACCAAGAGTGAGCAGAAGAAAGCGTCCGCGG AACCTTTTCAAATCCCTGTCGTACTCCGGAGAAAGGAGTATCTGAAAGGT GAAGAACTGCAGAAATGGCTCGAAAGCGAGAGGCTAAAAAAAGAAGCGGT GATGGAGCAAAAACGGAAAGAAGAAGACGAACGAAGGAAGGAGGAGCTTA AAGCAATTGAAAAGGCAAACAATGAAAAGGTTGCATCCGAAAAAGAGGAA AAAAGGGAGGCGCAAAAAGAAAGCAAGGGAGGGGAGAATGAAGCCAAACG TGCAAATGGTGATGTGGTGGTGATGGGAGACGATGAGAAGATTTTAGAAA TGATGCGGGAATACGATGCTCGCCCGAAGAGAGCTAGGCTGGGTACATTT CCATTCCAAGTGGCGCCGCGACCTTCATGGGACGAGTACGGGCAGATTGT AGACACTAGCTGCTTCATGATCGGGGAAGATCCCGGGGAGGGGGCGCCGC TCAAAGAGTCGGAAGAGAAGAAACAAGGGGAGGCGATGACTGACGCCGAT CTCATTCGAGAGGAGGTACCCGCAGAGTACATTGAGGAAGCTGTAACTCT AAATGTGGCGTGTAAACTGCATATTGTAGACTTTTCGGGCTTGTGTGATG GAGATTCTCTGAAGCGTTTGATGAAGGAAGTAGAGCCGCGACACGTGACG CTTGCTGCTGGCAGTGAGGAGGAGACGAATCACTTCAAGCAGTATTTGGA ATCGCAAGTTTTCGGGGGTAATCGGGTGCAGAGCTTCGAGCACAGCAGAA TTGAGGGTGCGTTGGTGGCAGCACCTCGTGACATGGAAAGTGTGGACATT ACAAGCCGCAGTTCGGTGTGGCGGTTCTCGTTGCAGGACACGCTGATCGG GAGTCTACAGTGGGAAAGCGTGAATCTGTCGCACATAGCATTTGTGGATG CCGTGGTGATGGCGGAACGAGACGCAAGCGGGAAGCAAGTGTTGAACGTG AACGACTCGCGAAAAGAAGAGGACATGGGGGTGATGATGGATGTTGGGGA GAGGGGCGCGGGGGTGGAGCCGGGCAAGACGACGGAGAAAGGGGAAAATA GCAACGGTCATAGCACAATCATGATTGGGACGGTGATGCTGAATCAACTG CTGGACAAGCTGAGCAAGGCCGGGCTAAAGGCGGAGTTTGCCGGCGGGGC GCTGTGTGTGCAAAATGTGGACACTGGAGTGGTGGTGCTGGTGAAAAAAA CAGCGGCGCAGCGAATTGCGTTGGAAGGGGCTTTCTCGGAGGAATACGTG AAGATTCGAGACTTGCTGTATGAGGAACTGATCATTCCGAGATAA back to top
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