Gchil9172.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9172.t1
Unique NameGchil9172.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length600
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2207948..2209747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9172Gchil9172Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2207948..2209747 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9172.t1.stop1Gchil9172.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2207948..2207950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9172.t1.CDS1Gchil9172.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2207948..2209747 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9172.t1.exon1Gchil9172.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2207948..2209747 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9172.t1.start1Gchil9172.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2209745..2209747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9172.t1Gchil9172.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2207948..2209747 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9172.t1 ID=Gchil9172.t1|Name=Gchil9172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp
MNSTDPYADVARYEYRISAHNDFDAMVKLSNIFLYDSRVLRDSHRALQLL
ERAVKQGRNQRAMYHLAIYFRDFGCKSQRHRVIPLLEQALRVRERKRVLY
HLACTLLSGKCGRRDPVRAAQLLRRALRLGDDVECTATLAHVMLQETSVY
GDKRTGLILYKLAINASKNPVYMNNLATLYISGTPVLEQSYTRAVKWFKR
AIRGGNIVARTNYATLLCQPDYGIEPDCRSAASMLEEVCHLKNESVLLQL
AEIYEQCEEVRNFDRAFLLYERAIRELRSFKALFRWIDCLVYGRTGFPVN
NAQAVQVCNKFVSFGKFPSIILSPILWSGTTEVGADPQRALQLCQCLDVD
KSYLLAAMYRTGAPGFRSDPERAKSFCTEPSINPEKLIAAVLLSEEMDLK
SVQRAERIFRDLAVDDDGHLIWLPLFLRRSKFCLPYRGDPSYMPDRTKRF
EYVDQIAQMNLAILLLEQDDRGSEACLEAERILEYLMGTRLKELAMANLA
YILLNGPASVQRDRKRAMEILESAHEDDITAQVMLVGALFEDRELGRSQE
LWNKVRERVTQTAELTKLSRLLPDSAREKLIACENDHEVKDEGAGADIS*
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spliced messenger RNA

>Gchil9172.t1 ID=Gchil9172.t1|Name=Gchil9172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004370_pilon:2207948..2209747- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTACAGACCCCTACGCCGATGTAGCACGCTACGAGTACCGAAT
CTCCGCGCACAACGATTTCGATGCCATGGTGAAGCTGTCCAACATTTTTC
TGTACGACTCTCGCGTGCTAAGAGATTCCCACCGCGCGCTTCAGCTTCTC
GAACGCGCCGTGAAGCAAGGGCGCAATCAAAGAGCTATGTACCACCTTGC
AATTTATTTCCGAGACTTTGGTTGTAAGTCGCAGCGACATCGCGTCATTC
CTCTCCTCGAGCAAGCACTGCGTGTGCGGGAGAGAAAACGAGTGCTATAT
CACCTGGCCTGTACTCTGTTATCTGGGAAATGTGGACGACGTGATCCCGT
TCGTGCGGCACAGTTGCTTCGTCGGGCTCTACGGCTTGGAGACGATGTGG
AATGCACGGCTACTCTCGCGCACGTAATGTTGCAAGAAACTTCAGTTTAT
GGAGATAAGCGAACAGGATTAATTCTCTACAAGCTCGCCATCAACGCATC
AAAGAACCCCGTGTACATGAACAATTTGGCTACTCTTTACATCAGCGGTA
CGCCTGTTTTGGAACAATCATATACCAGGGCTGTAAAGTGGTTCAAACGT
GCTATTAGGGGAGGGAATATCGTCGCCAGAACCAATTATGCTACCTTACT
GTGTCAACCTGATTATGGAATTGAGCCTGATTGCAGGTCTGCGGCCAGCA
TGCTTGAAGAAGTATGCCACCTCAAGAACGAAAGCGTGCTGCTTCAGTTG
GCGGAAATTTATGAGCAATGTGAGGAAGTGCGAAACTTCGATCGCGCCTT
TTTGCTATACGAACGTGCTATACGCGAATTGCGTTCCTTTAAAGCACTCT
TTCGATGGATTGACTGTCTGGTGTATGGTCGTACGGGGTTTCCAGTTAAC
AATGCGCAGGCAGTACAAGTATGCAACAAGTTTGTATCGTTTGGGAAGTT
TCCAAGTATAATCTTATCTCCCATTTTATGGAGCGGTACCACTGAAGTGG
GCGCAGATCCTCAACGAGCTCTGCAACTTTGTCAGTGTTTGGATGTCGAT
AAGTCATATTTGCTAGCCGCAATGTACCGCACGGGCGCCCCTGGCTTTCG
ATCTGATCCCGAACGAGCAAAGTCTTTCTGCACGGAACCTAGCATCAATC
CTGAAAAACTCATAGCTGCCGTTCTTCTCAGTGAAGAAATGGACTTGAAA
TCCGTGCAACGAGCCGAACGAATTTTCCGCGATCTGGCAGTTGATGATGA
CGGACATCTCATCTGGCTACCACTCTTTCTAAGACGAAGCAAATTTTGCC
TGCCGTATCGTGGAGATCCAAGCTATATGCCCGATCGGACGAAAAGATTC
GAATATGTGGATCAAATAGCGCAAATGAACCTTGCCATTTTACTTCTTGA
ACAAGACGACAGAGGTTCTGAGGCGTGTTTAGAAGCAGAAAGAATTCTTG
AATATTTGATGGGTACTAGACTGAAGGAATTGGCGATGGCAAATCTGGCC
TATATTCTTCTGAATGGGCCAGCTTCTGTTCAACGGGATAGGAAAAGAGC
CATGGAAATACTGGAGTCAGCTCATGAAGACGACATTACAGCGCAGGTTA
TGTTAGTCGGTGCGCTCTTTGAGGATCGTGAATTGGGGAGAAGTCAAGAG
TTGTGGAACAAGGTTAGGGAGAGAGTGACACAGACTGCCGAACTCACCAA
ACTCTCACGGTTGCTTCCAGATTCGGCTAGAGAGAAACTCATCGCATGTG
AAAATGATCATGAAGTCAAAGATGAAGGAGCTGGAGCAGATATTTCCTGA
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protein sequence of Gchil9172.t1

>Gchil9172.t1 ID=Gchil9172.t1|Name=Gchil9172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=600bp
MNSTDPYADVARYEYRISAHNDFDAMVKLSNIFLYDSRVLRDSHRALQLL
ERAVKQGRNQRAMYHLAIYFRDFGCKSQRHRVIPLLEQALRVRERKRVLY
HLACTLLSGKCGRRDPVRAAQLLRRALRLGDDVECTATLAHVMLQETSVY
GDKRTGLILYKLAINASKNPVYMNNLATLYISGTPVLEQSYTRAVKWFKR
AIRGGNIVARTNYATLLCQPDYGIEPDCRSAASMLEEVCHLKNESVLLQL
AEIYEQCEEVRNFDRAFLLYERAIRELRSFKALFRWIDCLVYGRTGFPVN
NAQAVQVCNKFVSFGKFPSIILSPILWSGTTEVGADPQRALQLCQCLDVD
KSYLLAAMYRTGAPGFRSDPERAKSFCTEPSINPEKLIAAVLLSEEMDLK
SVQRAERIFRDLAVDDDGHLIWLPLFLRRSKFCLPYRGDPSYMPDRTKRF
EYVDQIAQMNLAILLLEQDDRGSEACLEAERILEYLMGTRLKELAMANLA
YILLNGPASVQRDRKRAMEILESAHEDDITAQVMLVGALFEDRELGRSQE
LWNKVRERVTQTAELTKLSRLLPDSAREKLIACENDHEVKDEGAGADIS*
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mRNA from alignment at tig00004370_pilon:2207948..2209747-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9172.t1 ID=Gchil9172.t1|Name=Gchil9172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004370_pilon:2207948..2209747- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCTACAGACCCCTACGCCGATGTAGCACGCTACGAGTACCGAAT
CTCCGCGCACAACGATTTCGATGCCATGGTGAAGCTGTCCAACATTTTTC
TGTACGACTCTCGCGTGCTAAGAGATTCCCACCGCGCGCTTCAGCTTCTC
GAACGCGCCGTGAAGCAAGGGCGCAATCAAAGAGCTATGTACCACCTTGC
AATTTATTTCCGAGACTTTGGTTGTAAGTCGCAGCGACATCGCGTCATTC
CTCTCCTCGAGCAAGCACTGCGTGTGCGGGAGAGAAAACGAGTGCTATAT
CACCTGGCCTGTACTCTGTTATCTGGGAAATGTGGACGACGTGATCCCGT
TCGTGCGGCACAGTTGCTTCGTCGGGCTCTACGGCTTGGAGACGATGTGG
AATGCACGGCTACTCTCGCGCACGTAATGTTGCAAGAAACTTCAGTTTAT
GGAGATAAGCGAACAGGATTAATTCTCTACAAGCTCGCCATCAACGCATC
AAAGAACCCCGTGTACATGAACAATTTGGCTACTCTTTACATCAGCGGTA
CGCCTGTTTTGGAACAATCATATACCAGGGCTGTAAAGTGGTTCAAACGT
GCTATTAGGGGAGGGAATATCGTCGCCAGAACCAATTATGCTACCTTACT
GTGTCAACCTGATTATGGAATTGAGCCTGATTGCAGGTCTGCGGCCAGCA
TGCTTGAAGAAGTATGCCACCTCAAGAACGAAAGCGTGCTGCTTCAGTTG
GCGGAAATTTATGAGCAATGTGAGGAAGTGCGAAACTTCGATCGCGCCTT
TTTGCTATACGAACGTGCTATACGCGAATTGCGTTCCTTTAAAGCACTCT
TTCGATGGATTGACTGTCTGGTGTATGGTCGTACGGGGTTTCCAGTTAAC
AATGCGCAGGCAGTACAAGTATGCAACAAGTTTGTATCGTTTGGGAAGTT
TCCAAGTATAATCTTATCTCCCATTTTATGGAGCGGTACCACTGAAGTGG
GCGCAGATCCTCAACGAGCTCTGCAACTTTGTCAGTGTTTGGATGTCGAT
AAGTCATATTTGCTAGCCGCAATGTACCGCACGGGCGCCCCTGGCTTTCG
ATCTGATCCCGAACGAGCAAAGTCTTTCTGCACGGAACCTAGCATCAATC
CTGAAAAACTCATAGCTGCCGTTCTTCTCAGTGAAGAAATGGACTTGAAA
TCCGTGCAACGAGCCGAACGAATTTTCCGCGATCTGGCAGTTGATGATGA
CGGACATCTCATCTGGCTACCACTCTTTCTAAGACGAAGCAAATTTTGCC
TGCCGTATCGTGGAGATCCAAGCTATATGCCCGATCGGACGAAAAGATTC
GAATATGTGGATCAAATAGCGCAAATGAACCTTGCCATTTTACTTCTTGA
ACAAGACGACAGAGGTTCTGAGGCGTGTTTAGAAGCAGAAAGAATTCTTG
AATATTTGATGGGTACTAGACTGAAGGAATTGGCGATGGCAAATCTGGCC
TATATTCTTCTGAATGGGCCAGCTTCTGTTCAACGGGATAGGAAAAGAGC
CATGGAAATACTGGAGTCAGCTCATGAAGACGACATTACAGCGCAGGTTA
TGTTAGTCGGTGCGCTCTTTGAGGATCGTGAATTGGGGAGAAGTCAAGAG
TTGTGGAACAAGGTTAGGGAGAGAGTGACACAGACTGCCGAACTCACCAA
ACTCTCACGGTTGCTTCCAGATTCGGCTAGAGAGAAACTCATCGCATGTG
AAAATGATCATGAAGTCAAAGATGAAGGAGCTGGAGCAGATATTTCCTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:2207948..2209747-

>Gchil9172.t1 ID=Gchil9172.t1|Name=Gchil9172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1800bp|location=Sequence derived from alignment at tig00004370_pilon:2207948..2209747- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCTACAGACCCCTACGCCGATGTAGCACGCTACGAGTACCGAAT
CTCCGCGCACAACGATTTCGATGCCATGGTGAAGCTGTCCAACATTTTTC
TGTACGACTCTCGCGTGCTAAGAGATTCCCACCGCGCGCTTCAGCTTCTC
GAACGCGCCGTGAAGCAAGGGCGCAATCAAAGAGCTATGTACCACCTTGC
AATTTATTTCCGAGACTTTGGTTGTAAGTCGCAGCGACATCGCGTCATTC
CTCTCCTCGAGCAAGCACTGCGTGTGCGGGAGAGAAAACGAGTGCTATAT
CACCTGGCCTGTACTCTGTTATCTGGGAAATGTGGACGACGTGATCCCGT
TCGTGCGGCACAGTTGCTTCGTCGGGCTCTACGGCTTGGAGACGATGTGG
AATGCACGGCTACTCTCGCGCACGTAATGTTGCAAGAAACTTCAGTTTAT
GGAGATAAGCGAACAGGATTAATTCTCTACAAGCTCGCCATCAACGCATC
AAAGAACCCCGTGTACATGAACAATTTGGCTACTCTTTACATCAGCGGTA
CGCCTGTTTTGGAACAATCATATACCAGGGCTGTAAAGTGGTTCAAACGT
GCTATTAGGGGAGGGAATATCGTCGCCAGAACCAATTATGCTACCTTACT
GTGTCAACCTGATTATGGAATTGAGCCTGATTGCAGGTCTGCGGCCAGCA
TGCTTGAAGAAGTATGCCACCTCAAGAACGAAAGCGTGCTGCTTCAGTTG
GCGGAAATTTATGAGCAATGTGAGGAAGTGCGAAACTTCGATCGCGCCTT
TTTGCTATACGAACGTGCTATACGCGAATTGCGTTCCTTTAAAGCACTCT
TTCGATGGATTGACTGTCTGGTGTATGGTCGTACGGGGTTTCCAGTTAAC
AATGCGCAGGCAGTACAAGTATGCAACAAGTTTGTATCGTTTGGGAAGTT
TCCAAGTATAATCTTATCTCCCATTTTATGGAGCGGTACCACTGAAGTGG
GCGCAGATCCTCAACGAGCTCTGCAACTTTGTCAGTGTTTGGATGTCGAT
AAGTCATATTTGCTAGCCGCAATGTACCGCACGGGCGCCCCTGGCTTTCG
ATCTGATCCCGAACGAGCAAAGTCTTTCTGCACGGAACCTAGCATCAATC
CTGAAAAACTCATAGCTGCCGTTCTTCTCAGTGAAGAAATGGACTTGAAA
TCCGTGCAACGAGCCGAACGAATTTTCCGCGATCTGGCAGTTGATGATGA
CGGACATCTCATCTGGCTACCACTCTTTCTAAGACGAAGCAAATTTTGCC
TGCCGTATCGTGGAGATCCAAGCTATATGCCCGATCGGACGAAAAGATTC
GAATATGTGGATCAAATAGCGCAAATGAACCTTGCCATTTTACTTCTTGA
ACAAGACGACAGAGGTTCTGAGGCGTGTTTAGAAGCAGAAAGAATTCTTG
AATATTTGATGGGTACTAGACTGAAGGAATTGGCGATGGCAAATCTGGCC
TATATTCTTCTGAATGGGCCAGCTTCTGTTCAACGGGATAGGAAAAGAGC
CATGGAAATACTGGAGTCAGCTCATGAAGACGACATTACAGCGCAGGTTA
TGTTAGTCGGTGCGCTCTTTGAGGATCGTGAATTGGGGAGAAGTCAAGAG
TTGTGGAACAAGGTTAGGGAGAGAGTGACACAGACTGCCGAACTCACCAA
ACTCTCACGGTTGCTTCCAGATTCGGCTAGAGAGAAACTCATCGCATGTG
AAAATGATCATGAAGTCAAAGATGAAGGAGCTGGAGCAGATATTTCCTGA
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