Gchil9165.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9165.t1
Unique NameGchil9165.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length558
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2179647..2181320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9165Gchil9165Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2179647..2181320 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9165.t1.stop1Gchil9165.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2179647..2179649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9165.t1.CDS1Gchil9165.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2179647..2181320 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9165.t1.exon1Gchil9165.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2179647..2181320 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9165.t1.start1Gchil9165.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2181318..2181320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9165.t1Gchil9165.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2179647..2181320 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9165.t1 ID=Gchil9165.t1|Name=Gchil9165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp
MNPLVLFCAVALVQLAQAKQTFPTDGNYDCDSYDPFASQRPGHACLANMK
IHPDIYDVCKDDTNHTCYIFLQEPPFIILDDIPKFNSSESAFSLQKPFKC
GQFENQLLEAGGIRGIAFHLHKLTSSRDDWCMWGGHADHCPFNQLVDFIN
VKAGQGYRFGISGLLLEMPSRQCVNHPSAPFLDNKMIIIGRRAPQFSGSE
GPLHQLIKPFHQGTWAIFAGVLLLFVAVCLAIAVRFHWFRGRSLITAFFI
FSGERDQALAHEAALQQGVSAREAVSFATKYGLSMSLFRMALLALVAIFA
LFYEVAVVNFLFQQHNQTLSKPVRRLSLEQLADFAVLKDSALENVWDATL
RSGRYRDWHGRVPWQQTPTATDSIKRVQNGDASFMVTFEVLGKYLLMQHS
SCSELTVFETQDVLYQFNGGWLYNSKVSEERRMLVDRELVGLRVKGRTRE
LVEDALQGHTEECSKSNTLDIGPMIILIPCLIFVIPPLLCSVLVLVLWKK
KPQRRNGNETESMGDLEMAMETPPKRNEEASTDSSSDFTINDCSQPRLPK
FPTRPYR*
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spliced messenger RNA

>Gchil9165.t1 ID=Gchil9165.t1|Name=Gchil9165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00004370_pilon:2179647..2181320- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCTCTCGTACTTTTCTGCGCTGTCGCTCTCGTTCAGCTTGCCCA
AGCCAAACAAACCTTCCCTACTGACGGAAATTACGACTGCGACTCCTATG
ATCCTTTTGCTTCGCAACGCCCTGGCCACGCCTGCTTGGCCAACATGAAA
ATCCATCCCGACATTTACGACGTCTGCAAGGACGATACCAATCACACATG
CTACATTTTCTTGCAAGAGCCTCCCTTCATCATCCTTGACGACATCCCCA
AATTCAACAGCTCCGAAAGTGCCTTTTCCCTACAAAAGCCCTTCAAATGC
GGCCAATTTGAAAACCAGCTGCTTGAGGCGGGTGGCATTCGCGGAATCGC
ATTTCATCTGCACAAACTCACGTCGTCCCGCGATGATTGGTGCATGTGGG
GCGGCCATGCCGACCATTGTCCTTTCAATCAACTCGTCGACTTTATCAAT
GTCAAAGCCGGACAGGGGTATCGCTTTGGTATTTCAGGTCTTCTACTGGA
AATGCCATCGCGTCAATGCGTCAATCATCCTTCTGCACCTTTCCTCGACA
ATAAGATGATCATCATCGGCCGCAGAGCGCCCCAGTTCAGCGGTTCGGAA
GGCCCTCTCCACCAGCTAATAAAGCCGTTCCACCAAGGCACATGGGCCAT
TTTCGCCGGCGTGTTGTTGTTGTTCGTCGCCGTGTGCCTTGCCATTGCCG
TCCGTTTTCACTGGTTCAGAGGGCGAAGCTTGATCACAGCATTCTTTATC
TTTTCTGGAGAGCGAGATCAGGCGTTGGCACATGAGGCAGCCTTGCAGCA
AGGCGTCAGCGCTAGAGAGGCCGTATCGTTTGCCACCAAGTATGGACTTT
CAATGTCACTGTTCCGCATGGCATTGCTGGCTCTAGTCGCCATCTTTGCA
TTGTTCTACGAAGTGGCAGTGGTTAACTTCTTGTTTCAGCAACACAACCA
GACACTTTCCAAGCCCGTCAGACGACTGAGTCTCGAACAACTAGCAGATT
TTGCTGTTCTCAAAGACTCGGCGCTTGAAAACGTGTGGGATGCCACATTA
CGAAGTGGAAGATATCGGGACTGGCATGGACGAGTGCCATGGCAACAAAC
CCCCACTGCTACTGATTCCATAAAGCGGGTGCAAAATGGAGACGCGTCGT
TCATGGTAACTTTTGAGGTGTTGGGAAAGTACTTGCTCATGCAGCACTCG
TCGTGTAGCGAGCTTACGGTTTTCGAGACGCAGGACGTGCTATATCAGTT
CAACGGGGGGTGGCTGTATAATTCTAAGGTGTCGGAGGAGCGACGCATGC
TGGTGGACCGCGAGCTGGTAGGACTTCGCGTCAAAGGACGCACCAGGGAA
TTGGTGGAAGACGCGTTACAGGGGCACACAGAAGAATGTAGCAAGTCTAA
CACGTTAGATATCGGGCCCATGATCATCCTGATCCCATGCTTGATATTCG
TGATCCCTCCGCTTTTGTGCTCGGTGCTTGTGCTGGTGCTGTGGAAAAAG
AAGCCGCAGCGGCGGAACGGGAACGAGACGGAAAGCATGGGGGACTTGGA
GATGGCGATGGAGACACCACCGAAGCGCAACGAGGAAGCTTCGACTGACA
GCTCTTCTGACTTCACCATTAATGATTGTAGTCAACCGCGGCTTCCGAAG
TTCCCCACTCGCCCATATCGGTAG
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protein sequence of Gchil9165.t1

>Gchil9165.t1 ID=Gchil9165.t1|Name=Gchil9165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=558bp
MNPLVLFCAVALVQLAQAKQTFPTDGNYDCDSYDPFASQRPGHACLANMK
IHPDIYDVCKDDTNHTCYIFLQEPPFIILDDIPKFNSSESAFSLQKPFKC
GQFENQLLEAGGIRGIAFHLHKLTSSRDDWCMWGGHADHCPFNQLVDFIN
VKAGQGYRFGISGLLLEMPSRQCVNHPSAPFLDNKMIIIGRRAPQFSGSE
GPLHQLIKPFHQGTWAIFAGVLLLFVAVCLAIAVRFHWFRGRSLITAFFI
FSGERDQALAHEAALQQGVSAREAVSFATKYGLSMSLFRMALLALVAIFA
LFYEVAVVNFLFQQHNQTLSKPVRRLSLEQLADFAVLKDSALENVWDATL
RSGRYRDWHGRVPWQQTPTATDSIKRVQNGDASFMVTFEVLGKYLLMQHS
SCSELTVFETQDVLYQFNGGWLYNSKVSEERRMLVDRELVGLRVKGRTRE
LVEDALQGHTEECSKSNTLDIGPMIILIPCLIFVIPPLLCSVLVLVLWKK
KPQRRNGNETESMGDLEMAMETPPKRNEEASTDSSSDFTINDCSQPRLPK
FPTRPYR*
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mRNA from alignment at tig00004370_pilon:2179647..2181320-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9165.t1 ID=Gchil9165.t1|Name=Gchil9165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00004370_pilon:2179647..2181320- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCCTCTCGTACTTTTCTGCGCTGTCGCTCTCGTTCAGCTTGCCCA
AGCCAAACAAACCTTCCCTACTGACGGAAATTACGACTGCGACTCCTATG
ATCCTTTTGCTTCGCAACGCCCTGGCCACGCCTGCTTGGCCAACATGAAA
ATCCATCCCGACATTTACGACGTCTGCAAGGACGATACCAATCACACATG
CTACATTTTCTTGCAAGAGCCTCCCTTCATCATCCTTGACGACATCCCCA
AATTCAACAGCTCCGAAAGTGCCTTTTCCCTACAAAAGCCCTTCAAATGC
GGCCAATTTGAAAACCAGCTGCTTGAGGCGGGTGGCATTCGCGGAATCGC
ATTTCATCTGCACAAACTCACGTCGTCCCGCGATGATTGGTGCATGTGGG
GCGGCCATGCCGACCATTGTCCTTTCAATCAACTCGTCGACTTTATCAAT
GTCAAAGCCGGACAGGGGTATCGCTTTGGTATTTCAGGTCTTCTACTGGA
AATGCCATCGCGTCAATGCGTCAATCATCCTTCTGCACCTTTCCTCGACA
ATAAGATGATCATCATCGGCCGCAGAGCGCCCCAGTTCAGCGGTTCGGAA
GGCCCTCTCCACCAGCTAATAAAGCCGTTCCACCAAGGCACATGGGCCAT
TTTCGCCGGCGTGTTGTTGTTGTTCGTCGCCGTGTGCCTTGCCATTGCCG
TCCGTTTTCACTGGTTCAGAGGGCGAAGCTTGATCACAGCATTCTTTATC
TTTTCTGGAGAGCGAGATCAGGCGTTGGCACATGAGGCAGCCTTGCAGCA
AGGCGTCAGCGCTAGAGAGGCCGTATCGTTTGCCACCAAGTATGGACTTT
CAATGTCACTGTTCCGCATGGCATTGCTGGCTCTAGTCGCCATCTTTGCA
TTGTTCTACGAAGTGGCAGTGGTTAACTTCTTGTTTCAGCAACACAACCA
GACACTTTCCAAGCCCGTCAGACGACTGAGTCTCGAACAACTAGCAGATT
TTGCTGTTCTCAAAGACTCGGCGCTTGAAAACGTGTGGGATGCCACATTA
CGAAGTGGAAGATATCGGGACTGGCATGGACGAGTGCCATGGCAACAAAC
CCCCACTGCTACTGATTCCATAAAGCGGGTGCAAAATGGAGACGCGTCGT
TCATGGTAACTTTTGAGGTGTTGGGAAAGTACTTGCTCATGCAGCACTCG
TCGTGTAGCGAGCTTACGGTTTTCGAGACGCAGGACGTGCTATATCAGTT
CAACGGGGGGTGGCTGTATAATTCTAAGGTGTCGGAGGAGCGACGCATGC
TGGTGGACCGCGAGCTGGTAGGACTTCGCGTCAAAGGACGCACCAGGGAA
TTGGTGGAAGACGCGTTACAGGGGCACACAGAAGAATGTAGCAAGTCTAA
CACGTTAGATATCGGGCCCATGATCATCCTGATCCCATGCTTGATATTCG
TGATCCCTCCGCTTTTGTGCTCGGTGCTTGTGCTGGTGCTGTGGAAAAAG
AAGCCGCAGCGGCGGAACGGGAACGAGACGGAAAGCATGGGGGACTTGGA
GATGGCGATGGAGACACCACCGAAGCGCAACGAGGAAGCTTCGACTGACA
GCTCTTCTGACTTCACCATTAATGATTGTAGTCAACCGCGGCTTCCGAAG
TTCCCCACTCGCCCATATCGGTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:2179647..2181320-

>Gchil9165.t1 ID=Gchil9165.t1|Name=Gchil9165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1674bp|location=Sequence derived from alignment at tig00004370_pilon:2179647..2181320- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCCTCTCGTACTTTTCTGCGCTGTCGCTCTCGTTCAGCTTGCCCA
AGCCAAACAAACCTTCCCTACTGACGGAAATTACGACTGCGACTCCTATG
ATCCTTTTGCTTCGCAACGCCCTGGCCACGCCTGCTTGGCCAACATGAAA
ATCCATCCCGACATTTACGACGTCTGCAAGGACGATACCAATCACACATG
CTACATTTTCTTGCAAGAGCCTCCCTTCATCATCCTTGACGACATCCCCA
AATTCAACAGCTCCGAAAGTGCCTTTTCCCTACAAAAGCCCTTCAAATGC
GGCCAATTTGAAAACCAGCTGCTTGAGGCGGGTGGCATTCGCGGAATCGC
ATTTCATCTGCACAAACTCACGTCGTCCCGCGATGATTGGTGCATGTGGG
GCGGCCATGCCGACCATTGTCCTTTCAATCAACTCGTCGACTTTATCAAT
GTCAAAGCCGGACAGGGGTATCGCTTTGGTATTTCAGGTCTTCTACTGGA
AATGCCATCGCGTCAATGCGTCAATCATCCTTCTGCACCTTTCCTCGACA
ATAAGATGATCATCATCGGCCGCAGAGCGCCCCAGTTCAGCGGTTCGGAA
GGCCCTCTCCACCAGCTAATAAAGCCGTTCCACCAAGGCACATGGGCCAT
TTTCGCCGGCGTGTTGTTGTTGTTCGTCGCCGTGTGCCTTGCCATTGCCG
TCCGTTTTCACTGGTTCAGAGGGCGAAGCTTGATCACAGCATTCTTTATC
TTTTCTGGAGAGCGAGATCAGGCGTTGGCACATGAGGCAGCCTTGCAGCA
AGGCGTCAGCGCTAGAGAGGCCGTATCGTTTGCCACCAAGTATGGACTTT
CAATGTCACTGTTCCGCATGGCATTGCTGGCTCTAGTCGCCATCTTTGCA
TTGTTCTACGAAGTGGCAGTGGTTAACTTCTTGTTTCAGCAACACAACCA
GACACTTTCCAAGCCCGTCAGACGACTGAGTCTCGAACAACTAGCAGATT
TTGCTGTTCTCAAAGACTCGGCGCTTGAAAACGTGTGGGATGCCACATTA
CGAAGTGGAAGATATCGGGACTGGCATGGACGAGTGCCATGGCAACAAAC
CCCCACTGCTACTGATTCCATAAAGCGGGTGCAAAATGGAGACGCGTCGT
TCATGGTAACTTTTGAGGTGTTGGGAAAGTACTTGCTCATGCAGCACTCG
TCGTGTAGCGAGCTTACGGTTTTCGAGACGCAGGACGTGCTATATCAGTT
CAACGGGGGGTGGCTGTATAATTCTAAGGTGTCGGAGGAGCGACGCATGC
TGGTGGACCGCGAGCTGGTAGGACTTCGCGTCAAAGGACGCACCAGGGAA
TTGGTGGAAGACGCGTTACAGGGGCACACAGAAGAATGTAGCAAGTCTAA
CACGTTAGATATCGGGCCCATGATCATCCTGATCCCATGCTTGATATTCG
TGATCCCTCCGCTTTTGTGCTCGGTGCTTGTGCTGGTGCTGTGGAAAAAG
AAGCCGCAGCGGCGGAACGGGAACGAGACGGAAAGCATGGGGGACTTGGA
GATGGCGATGGAGACACCACCGAAGCGCAACGAGGAAGCTTCGACTGACA
GCTCTTCTGACTTCACCATTAATGATTGTAGTCAACCGCGGCTTCCGAAG
TTCCCCACTCGCCCATATCGGTAG
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