Gchil9141.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9141.t1
Unique Name	Gchil9141.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	813

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1991520..1993958 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	71139.XP_010062284.1
PFAMs	COG7
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20294
Evalue	1.05e-33
EggNOG OGs	KOG4182@1\|root,KOG4182@2759\|Eukaryota,37NHZ@33090\|Viridiplantae,3GCJC@35493\|Streptophyta
Description	Conserved oligomeric Golgi complex subunit
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9141	Gchil9141	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1991520..1993958 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9141.t1.stop1	Gchil9141.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1991520..1991522 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9141.t1.CDS1	Gchil9141.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1991520..1993958 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9141.t1.exon1	Gchil9141.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1991520..1993958 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9141.t1.start1	Gchil9141.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1993956..1993958 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9141.t1	Gchil9141.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1991520..1993958 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1991520..1993958-
coding sequence from alignment at tig00004370_pilon:1991520..1993958-

mRNA sequence

>Gchil9141.t1 ID=Gchil9141.t1|Name=Gchil9141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp
MSSVSAALPRSHDFALDPSSFNPATWLNSVLSHTQENQSRTTLNQLLDAT
NDAIRDAHSTLDQSLKSALSAIPWVVRETERVRQRATALRTSVDGVGERV
AGVETSVVSSVKTIADVDTVVRRVQDTAQLLSTAVTVDTLLDRLSSLLAS
SAADGADLVQAADLVSQLRTSLLPLRKISEFNSRVAQLDEADASLERFAK
PQLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRNFWLRA
WSAISEDRDDVQDSISPQTREANLCSPASDEALQAFYDKLEDMLVAERTW
LLEAFPDLCDIVLPELVSESMRGLSPPLVVKVGENADVNLYAAALRSISS
SGRIGRILVPRARVLHGVLDAEEDQRKSSDLDDEITLAIQDAISSLLLPY
RKFWDYFSMISVQSARKLTRGIELSAVDSIIHSLQTMPKSEVHRPLLGLV
AKDIDVLSKEALILLENTLTILTDHTCGIGIGVMKRTSDAIASEISRRVI
DVLKTPPGPQNVDEWTNINDVLRLLTSTSILKRAWDGKKESVFAVAVGTA
TPVLEVASVVQVSREKRIHQFLAQAETKPKEAGIVWELVRDSGLASRTVS
EFEMLEGTNDFGDLVDFVHRLVYECMFSGVRERFKAFNAEDFWNVDGDDE
TLASVSSSPLAYATEVADYLMTIPQQLEPFIPDEEDARFAKPKSPYVFCK
SGGRTEDELSFAGMWISVLTIATMELYVDRIGSLSRLSEGGTRQLATDVD
YICNVIASLGVTPSPEVTLICKLLEAKSDRNSFLQAMEGYTTLDHKKLAR
RIAALRGISVSL*

spliced messenger RNA

>Gchil9141.t1 ID=Gchil9141.t1|Name=Gchil9141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2439bp|location=Sequence derived from alignment at tig00004370_pilon:1991520..1993958- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCGTCAGCGCCGCTCTCCCTCGATCTCATGATTTCGCCTTGGA
TCCTAGTTCCTTCAACCCTGCGACGTGGTTGAATTCTGTTCTGTCTCACA
CGCAGGAGAACCAGAGCCGCACAACCTTGAACCAATTACTTGACGCTACA
AACGATGCTATTCGAGATGCACATTCAACGCTAGACCAATCTCTAAAGTC
TGCTTTATCCGCCATTCCATGGGTTGTGCGTGAAACAGAGCGTGTCAGGC
AGCGAGCGACCGCTCTACGAACAAGCGTTGACGGTGTGGGGGAAAGAGTT
GCCGGCGTCGAAACATCAGTTGTCTCAAGCGTTAAGACTATTGCCGACGT
TGATACCGTGGTTCGTCGTGTTCAAGATACTGCGCAGTTGCTCAGCACTG
CTGTCACAGTGGACACCCTGCTTGATCGATTGTCATCGCTCTTGGCTTCT
TCAGCCGCAGATGGGGCTGATCTTGTGCAGGCTGCAGATTTGGTCTCTCA
ACTTCGTACATCACTGCTCCCGTTGCGGAAAATATCGGAGTTTAATTCTC
GTGTCGCCCAACTTGATGAGGCAGATGCGTCTCTTGAGCGGTTCGCTAAA
CCGCAACTACAACGTGCGTTGGAACAGCGGAACACTTCTGCAGCACGAAA
TGCTCGAATAGTTTACGACCATGCCGGACGTGAGAATGCGTTTCGCACCC
AATATGGTTCACTCCGTGCAGCAGAAGTTAGAAATTTTTGGCTCAGAGCA
TGGTCTGCGATCTCGGAAGATAGAGACGATGTCCAGGACTCCATCAGTCC
CCAAACTCGCGAAGCAAACCTTTGTTCTCCAGCATCAGATGAAGCACTGC
AGGCGTTTTACGACAAGCTCGAGGACATGCTTGTCGCGGAACGTACGTGG
CTCTTGGAGGCCTTCCCCGATCTTTGCGACATAGTGCTACCAGAGTTGGT
ATCCGAAAGCATGCGTGGTCTCTCTCCCCCCCTCGTCGTTAAAGTTGGAG
AGAATGCCGATGTCAATTTGTACGCAGCTGCCCTCCGAAGCATATCCTCA
AGTGGTAGAATAGGCCGTATCTTGGTACCTAGAGCTAGAGTTCTACACGG
CGTTTTAGACGCTGAGGAGGACCAGCGGAAAAGCTCTGACTTGGATGATG
AAATTACGCTGGCTATTCAAGACGCCATTTCTTCTCTCCTACTTCCCTAT
CGAAAATTCTGGGATTACTTCTCGATGATATCGGTACAGAGTGCGCGGAA
ATTGACGCGTGGTATCGAGCTTAGCGCCGTCGACTCTATCATCCATTCAT
TACAGACAATGCCGAAGTCAGAAGTGCATCGCCCCCTTCTTGGGCTTGTC
GCCAAAGATATAGATGTTCTGTCTAAAGAAGCTCTTATATTACTCGAAAA
CACTTTAACCATTCTCACTGATCATACTTGTGGAATTGGAATTGGTGTAA
TGAAGAGAACAAGTGATGCCATTGCCTCGGAAATTTCAAGGCGGGTGATT
GATGTACTCAAAACCCCACCAGGTCCACAGAATGTGGATGAGTGGACGAA
CATAAACGACGTTCTTCGTCTCCTGACATCCACAAGTATTCTGAAGAGAG
CATGGGACGGAAAGAAGGAATCTGTGTTTGCTGTAGCTGTTGGAACTGCA
ACACCTGTTTTAGAGGTCGCGTCAGTCGTGCAGGTCTCACGCGAGAAAAG
GATTCATCAGTTTCTGGCTCAAGCTGAAACAAAACCAAAGGAGGCGGGTA
TAGTGTGGGAGCTTGTCCGCGATTCGGGGCTTGCTAGTAGAACGGTCTCA
GAATTTGAAATGCTAGAAGGAACAAATGATTTTGGAGATCTTGTTGATTT
CGTGCATCGTCTTGTCTATGAGTGCATGTTCAGCGGCGTCAGGGAGCGCT
TCAAAGCTTTCAATGCCGAAGACTTCTGGAACGTGGATGGCGATGATGAA
ACATTAGCCAGTGTATCCAGCTCGCCGTTGGCATATGCAACAGAAGTAGC
TGACTATTTAATGACCATACCGCAGCAGCTCGAACCATTCATCCCCGACG
AAGAAGACGCCCGTTTCGCGAAGCCAAAGTCACCATACGTCTTTTGTAAA
TCTGGCGGAAGGACTGAAGATGAGCTTTCTTTCGCAGGAATGTGGATATC
GGTGCTCACAATTGCTACCATGGAACTGTATGTGGACAGAATTGGTAGCT
TATCACGTCTATCAGAGGGTGGAACTCGCCAATTAGCCACGGATGTAGAT
TACATTTGCAACGTGATTGCTTCTCTCGGAGTTACACCGTCTCCAGAAGT
GACTTTAATTTGCAAGCTTTTGGAAGCTAAGTCGGACAGGAATTCTTTTC
TTCAGGCTATGGAGGGATATACTACTTTGGATCATAAGAAACTCGCTCGT
CGAATCGCAGCACTGAGAGGAATTAGCGTATCATTATAA

protein sequence of Gchil9141.t1

>Gchil9141.t1 ID=Gchil9141.t1|Name=Gchil9141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=813bp
MSSVSAALPRSHDFALDPSSFNPATWLNSVLSHTQENQSRTTLNQLLDAT
NDAIRDAHSTLDQSLKSALSAIPWVVRETERVRQRATALRTSVDGVGERV
AGVETSVVSSVKTIADVDTVVRRVQDTAQLLSTAVTVDTLLDRLSSLLAS
SAADGADLVQAADLVSQLRTSLLPLRKISEFNSRVAQLDEADASLERFAK
PQLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRNFWLRA
WSAISEDRDDVQDSISPQTREANLCSPASDEALQAFYDKLEDMLVAERTW
LLEAFPDLCDIVLPELVSESMRGLSPPLVVKVGENADVNLYAAALRSISS
SGRIGRILVPRARVLHGVLDAEEDQRKSSDLDDEITLAIQDAISSLLLPY
RKFWDYFSMISVQSARKLTRGIELSAVDSIIHSLQTMPKSEVHRPLLGLV
AKDIDVLSKEALILLENTLTILTDHTCGIGIGVMKRTSDAIASEISRRVI
DVLKTPPGPQNVDEWTNINDVLRLLTSTSILKRAWDGKKESVFAVAVGTA
TPVLEVASVVQVSREKRIHQFLAQAETKPKEAGIVWELVRDSGLASRTVS
EFEMLEGTNDFGDLVDFVHRLVYECMFSGVRERFKAFNAEDFWNVDGDDE
TLASVSSSPLAYATEVADYLMTIPQQLEPFIPDEEDARFAKPKSPYVFCK
SGGRTEDELSFAGMWISVLTIATMELYVDRIGSLSRLSEGGTRQLATDVD
YICNVIASLGVTPSPEVTLICKLLEAKSDRNSFLQAMEGYTTLDHKKLAR
RIAALRGISVSL*

mRNA from alignment at tig00004370_pilon:1991520..1993958-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9141.t1 ID=Gchil9141.t1|Name=Gchil9141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2439bp|location=Sequence derived from alignment at tig00004370_pilon:1991520..1993958- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCGTCAGCGCCGCTCTCCCTCGATCTCATGATTTCGCCTTGGA
TCCTAGTTCCTTCAACCCTGCGACGTGGTTGAATTCTGTTCTGTCTCACA
CGCAGGAGAACCAGAGCCGCACAACCTTGAACCAATTACTTGACGCTACA
AACGATGCTATTCGAGATGCACATTCAACGCTAGACCAATCTCTAAAGTC
TGCTTTATCCGCCATTCCATGGGTTGTGCGTGAAACAGAGCGTGTCAGGC
AGCGAGCGACCGCTCTACGAACAAGCGTTGACGGTGTGGGGGAAAGAGTT
GCCGGCGTCGAAACATCAGTTGTCTCAAGCGTTAAGACTATTGCCGACGT
TGATACCGTGGTTCGTCGTGTTCAAGATACTGCGCAGTTGCTCAGCACTG
CTGTCACAGTGGACACCCTGCTTGATCGATTGTCATCGCTCTTGGCTTCT
TCAGCCGCAGATGGGGCTGATCTTGTGCAGGCTGCAGATTTGGTCTCTCA
ACTTCGTACATCACTGCTCCCGTTGCGGAAAATATCGGAGTTTAATTCTC
GTGTCGCCCAACTTGATGAGGCAGATGCGTCTCTTGAGCGGTTCGCTAAA
CCGCAACTACAACGTGCGTTGGAACAGCGGAACACTTCTGCAGCACGAAA
TGCTCGAATAGTTTACGACCATGCCGGACGTGAGAATGCGTTTCGCACCC
AATATGGTTCACTCCGTGCAGCAGAAGTTAGAAATTTTTGGCTCAGAGCA
TGGTCTGCGATCTCGGAAGATAGAGACGATGTCCAGGACTCCATCAGTCC
CCAAACTCGCGAAGCAAACCTTTGTTCTCCAGCATCAGATGAAGCACTGC
AGGCGTTTTACGACAAGCTCGAGGACATGCTTGTCGCGGAACGTACGTGG
CTCTTGGAGGCCTTCCCCGATCTTTGCGACATAGTGCTACCAGAGTTGGT
ATCCGAAAGCATGCGTGGTCTCTCTCCCCCCCTCGTCGTTAAAGTTGGAG
AGAATGCCGATGTCAATTTGTACGCAGCTGCCCTCCGAAGCATATCCTCA
AGTGGTAGAATAGGCCGTATCTTGGTACCTAGAGCTAGAGTTCTACACGG
CGTTTTAGACGCTGAGGAGGACCAGCGGAAAAGCTCTGACTTGGATGATG
AAATTACGCTGGCTATTCAAGACGCCATTTCTTCTCTCCTACTTCCCTAT
CGAAAATTCTGGGATTACTTCTCGATGATATCGGTACAGAGTGCGCGGAA
ATTGACGCGTGGTATCGAGCTTAGCGCCGTCGACTCTATCATCCATTCAT
TACAGACAATGCCGAAGTCAGAAGTGCATCGCCCCCTTCTTGGGCTTGTC
GCCAAAGATATAGATGTTCTGTCTAAAGAAGCTCTTATATTACTCGAAAA
CACTTTAACCATTCTCACTGATCATACTTGTGGAATTGGAATTGGTGTAA
TGAAGAGAACAAGTGATGCCATTGCCTCGGAAATTTCAAGGCGGGTGATT
GATGTACTCAAAACCCCACCAGGTCCACAGAATGTGGATGAGTGGACGAA
CATAAACGACGTTCTTCGTCTCCTGACATCCACAAGTATTCTGAAGAGAG
CATGGGACGGAAAGAAGGAATCTGTGTTTGCTGTAGCTGTTGGAACTGCA
ACACCTGTTTTAGAGGTCGCGTCAGTCGTGCAGGTCTCACGCGAGAAAAG
GATTCATCAGTTTCTGGCTCAAGCTGAAACAAAACCAAAGGAGGCGGGTA
TAGTGTGGGAGCTTGTCCGCGATTCGGGGCTTGCTAGTAGAACGGTCTCA
GAATTTGAAATGCTAGAAGGAACAAATGATTTTGGAGATCTTGTTGATTT
CGTGCATCGTCTTGTCTATGAGTGCATGTTCAGCGGCGTCAGGGAGCGCT
TCAAAGCTTTCAATGCCGAAGACTTCTGGAACGTGGATGGCGATGATGAA
ACATTAGCCAGTGTATCCAGCTCGCCGTTGGCATATGCAACAGAAGTAGC
TGACTATTTAATGACCATACCGCAGCAGCTCGAACCATTCATCCCCGACG
AAGAAGACGCCCGTTTCGCGAAGCCAAAGTCACCATACGTCTTTTGTAAA
TCTGGCGGAAGGACTGAAGATGAGCTTTCTTTCGCAGGAATGTGGATATC
GGTGCTCACAATTGCTACCATGGAACTGTATGTGGACAGAATTGGTAGCT
TATCACGTCTATCAGAGGGTGGAACTCGCCAATTAGCCACGGATGTAGAT
TACATTTGCAACGTGATTGCTTCTCTCGGAGTTACACCGTCTCCAGAAGT
GACTTTAATTTGCAAGCTTTTGGAAGCTAAGTCGGACAGGAATTCTTTTC
TTCAGGCTATGGAGGGATATACTACTTTGGATCATAAGAAACTCGCTCGT
CGAATCGCAGCACTGAGAGGAATTAGCGTATCATTATAA

Coding sequence (CDS) from alignment at tig00004370_pilon:1991520..1993958-

>Gchil9141.t1 ID=Gchil9141.t1|Name=Gchil9141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2439bp|location=Sequence derived from alignment at tig00004370_pilon:1991520..1993958- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCGTCAGCGCCGCTCTCCCTCGATCTCATGATTTCGCCTTGGA
TCCTAGTTCCTTCAACCCTGCGACGTGGTTGAATTCTGTTCTGTCTCACA
CGCAGGAGAACCAGAGCCGCACAACCTTGAACCAATTACTTGACGCTACA
AACGATGCTATTCGAGATGCACATTCAACGCTAGACCAATCTCTAAAGTC
TGCTTTATCCGCCATTCCATGGGTTGTGCGTGAAACAGAGCGTGTCAGGC
AGCGAGCGACCGCTCTACGAACAAGCGTTGACGGTGTGGGGGAAAGAGTT
GCCGGCGTCGAAACATCAGTTGTCTCAAGCGTTAAGACTATTGCCGACGT
TGATACCGTGGTTCGTCGTGTTCAAGATACTGCGCAGTTGCTCAGCACTG
CTGTCACAGTGGACACCCTGCTTGATCGATTGTCATCGCTCTTGGCTTCT
TCAGCCGCAGATGGGGCTGATCTTGTGCAGGCTGCAGATTTGGTCTCTCA
ACTTCGTACATCACTGCTCCCGTTGCGGAAAATATCGGAGTTTAATTCTC
GTGTCGCCCAACTTGATGAGGCAGATGCGTCTCTTGAGCGGTTCGCTAAA
CCGCAACTACAACGTGCGTTGGAACAGCGGAACACTTCTGCAGCACGAAA
TGCTCGAATAGTTTACGACCATGCCGGACGTGAGAATGCGTTTCGCACCC
AATATGGTTCACTCCGTGCAGCAGAAGTTAGAAATTTTTGGCTCAGAGCA
TGGTCTGCGATCTCGGAAGATAGAGACGATGTCCAGGACTCCATCAGTCC
CCAAACTCGCGAAGCAAACCTTTGTTCTCCAGCATCAGATGAAGCACTGC
AGGCGTTTTACGACAAGCTCGAGGACATGCTTGTCGCGGAACGTACGTGG
CTCTTGGAGGCCTTCCCCGATCTTTGCGACATAGTGCTACCAGAGTTGGT
ATCCGAAAGCATGCGTGGTCTCTCTCCCCCCCTCGTCGTTAAAGTTGGAG
AGAATGCCGATGTCAATTTGTACGCAGCTGCCCTCCGAAGCATATCCTCA
AGTGGTAGAATAGGCCGTATCTTGGTACCTAGAGCTAGAGTTCTACACGG
CGTTTTAGACGCTGAGGAGGACCAGCGGAAAAGCTCTGACTTGGATGATG
AAATTACGCTGGCTATTCAAGACGCCATTTCTTCTCTCCTACTTCCCTAT
CGAAAATTCTGGGATTACTTCTCGATGATATCGGTACAGAGTGCGCGGAA
ATTGACGCGTGGTATCGAGCTTAGCGCCGTCGACTCTATCATCCATTCAT
TACAGACAATGCCGAAGTCAGAAGTGCATCGCCCCCTTCTTGGGCTTGTC
GCCAAAGATATAGATGTTCTGTCTAAAGAAGCTCTTATATTACTCGAAAA
CACTTTAACCATTCTCACTGATCATACTTGTGGAATTGGAATTGGTGTAA
TGAAGAGAACAAGTGATGCCATTGCCTCGGAAATTTCAAGGCGGGTGATT
GATGTACTCAAAACCCCACCAGGTCCACAGAATGTGGATGAGTGGACGAA
CATAAACGACGTTCTTCGTCTCCTGACATCCACAAGTATTCTGAAGAGAG
CATGGGACGGAAAGAAGGAATCTGTGTTTGCTGTAGCTGTTGGAACTGCA
ACACCTGTTTTAGAGGTCGCGTCAGTCGTGCAGGTCTCACGCGAGAAAAG
GATTCATCAGTTTCTGGCTCAAGCTGAAACAAAACCAAAGGAGGCGGGTA
TAGTGTGGGAGCTTGTCCGCGATTCGGGGCTTGCTAGTAGAACGGTCTCA
GAATTTGAAATGCTAGAAGGAACAAATGATTTTGGAGATCTTGTTGATTT
CGTGCATCGTCTTGTCTATGAGTGCATGTTCAGCGGCGTCAGGGAGCGCT
TCAAAGCTTTCAATGCCGAAGACTTCTGGAACGTGGATGGCGATGATGAA
ACATTAGCCAGTGTATCCAGCTCGCCGTTGGCATATGCAACAGAAGTAGC
TGACTATTTAATGACCATACCGCAGCAGCTCGAACCATTCATCCCCGACG
AAGAAGACGCCCGTTTCGCGAAGCCAAAGTCACCATACGTCTTTTGTAAA
TCTGGCGGAAGGACTGAAGATGAGCTTTCTTTCGCAGGAATGTGGATATC
GGTGCTCACAATTGCTACCATGGAACTGTATGTGGACAGAATTGGTAGCT
TATCACGTCTATCAGAGGGTGGAACTCGCCAATTAGCCACGGATGTAGAT
TACATTTGCAACGTGATTGCTTCTCTCGGAGTTACACCGTCTCCAGAAGT
GACTTTAATTTGCAAGCTTTTGGAAGCTAAGTCGGACAGGAATTCTTTTC
TTCAGGCTATGGAGGGATATACTACTTTGGATCATAAGAAACTCGCTCGT
CGAATCGCAGCACTGAGAGGAATTAGCGTATCATTATAA