Gchil9139.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9139.t1
Unique NameGchil9139.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1986810..1988363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ424CT
PFAMsNTP_transf_2,PAP_RNA-bind,PAP_central
Max annot lvl2759|Eukaryota
KEGG koko:K09254,ko:K14376
KEGG Pathwayko03015,ko04014,ko04624,ko05202,ko05203,map03015,map04014,map04624,map05202,map05203
GOsGO:0000003,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0009653,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0022414,GO:0031123,GO:0031124,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045824,GO:0046483,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048441,GO:0048444,GO:0048446,GO:0048449,GO:0048451,GO:0048465,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0061458,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080134,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1901360,GO:1905392,GO:1905393
Evalue4.19e-72
EggNOG OGsCOG5186@1|root,KOG2245@2759|Eukaryota
EC2.7.7.19
Descriptionpolynucleotide adenylyltransferase activity
COG categoryA
BRITEko00000,ko00001,ko01000,ko03000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9139Gchil9139Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1986810..1988363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9139.t1.stop1Gchil9139.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1986810..1986812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9139.t1.CDS1Gchil9139.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1986810..1988363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9139.t1.exon1Gchil9139.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1986810..1988363 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9139.t1.start1Gchil9139.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1988361..1988363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9139.t1Gchil9139.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1986810..1988363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9139.t1 ID=Gchil9139.t1|Name=Gchil9139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=518bp
MKEKTGCELLRFLHHNQRSLSNAERAHRKYVITCLDKIVRQWVRSVAYLY
HVPLPERTEQLSRVFSFGSHALGVDGPGSDVDVVVLTPNFISRKEHFFGR
KGRVPCQFGNEGDSKTCMLDILYTIGQAEQIVALRDAYAPVIRFLFHGIN
VDMQCAPLAVHYLPFPLDVLDNSLIKDVDPGTSRSASGVRSDQAMIRSLP
KYDTFCSVLRMVKLWAKRRCIYSSLHGYLGGISWAILTARICQTYEGYSG
IRLLALFFKTYTAWDWSPFPLWRPVRMTFENCDGMWTNWDNWMPPSTYYQ
NPMQIICPVFPFTNTSYNVCGATHKVMMKEIERACEIMEQITRAHLTIDE
GLLQLVEMYPFDQSFPVYLVIDVKATEAKEYREWQNFVESRIRRLTYEME
QTSNLDDIRPFPDAVKSVCHKTRERTSSFFVGLGTLAFDEYPECTNSMLC
PSVKRAVRSWETIINSWNLKKSGMHLTVRMSSRIKRPLENHTGGNETASG
KKRKREEYEQKDGLLKT*
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spliced messenger RNA

>Gchil9139.t1 ID=Gchil9139.t1|Name=Gchil9139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004370_pilon:1986810..1988363- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAAAAAACGGGTTGTGAACTTCTCAGATTCTTACATCATAATCA
AAGATCTTTATCAAATGCAGAACGAGCGCATCGGAAATATGTCATTACTT
GTTTGGATAAAATTGTTCGGCAATGGGTTCGAAGCGTTGCATACTTGTAT
CATGTTCCGCTTCCAGAGCGTACTGAACAGCTTTCACGAGTCTTCTCGTT
TGGCTCTCATGCACTGGGCGTTGATGGACCAGGATCTGATGTAGATGTTG
TCGTTCTCACCCCCAACTTTATTTCGAGAAAAGAGCATTTCTTTGGTCGC
AAGGGTCGAGTGCCTTGTCAATTTGGAAATGAAGGAGATTCTAAGACATG
TATGCTGGACATATTATACACTATAGGACAGGCCGAACAAATCGTGGCCC
TTCGAGATGCCTATGCACCCGTGATACGTTTCCTATTTCACGGGATCAAT
GTGGATATGCAATGTGCTCCTTTGGCTGTCCACTACCTTCCTTTCCCGCT
GGATGTTCTAGATAACTCACTTATCAAAGACGTCGATCCAGGTACAAGCC
GCAGTGCCTCAGGAGTCAGAAGCGATCAAGCTATGATACGCAGTCTTCCG
AAGTATGATACATTTTGCTCAGTGCTGAGAATGGTGAAACTGTGGGCGAA
ACGGCGTTGCATTTATTCGAGTTTGCATGGATATCTAGGTGGCATTTCTT
GGGCGATCCTAACAGCACGAATATGCCAAACGTATGAAGGATACTCTGGC
ATTCGGCTGCTGGCCCTGTTCTTCAAAACATATACTGCCTGGGATTGGAG
CCCATTTCCCTTGTGGCGGCCCGTTCGGATGACGTTTGAAAACTGTGACG
GGATGTGGACAAATTGGGACAATTGGATGCCGCCAAGCACATACTACCAA
AATCCAATGCAGATCATCTGTCCAGTCTTTCCCTTTACAAACACTTCTTA
CAATGTCTGCGGAGCAACTCATAAGGTCATGATGAAGGAAATTGAACGCG
CATGCGAAATTATGGAACAAATTACAAGAGCCCATCTAACCATAGATGAA
GGTCTTCTACAGCTTGTGGAAATGTATCCCTTTGACCAAAGCTTTCCTGT
CTACCTGGTTATAGACGTAAAAGCTACTGAGGCAAAAGAATACAGGGAGT
GGCAGAATTTCGTGGAATCGAGAATAAGAAGATTGACGTATGAGATGGAA
CAAACAAGCAACCTGGATGACATCAGACCGTTCCCAGACGCAGTAAAGTC
AGTTTGTCACAAGACCCGCGAAAGAACAAGCAGCTTCTTTGTTGGGCTTG
GAACCCTGGCATTCGATGAATACCCCGAGTGTACAAACTCTATGCTCTGC
CCTTCCGTTAAACGAGCCGTTCGAAGTTGGGAAACTATAATAAATTCATG
GAATCTCAAGAAGTCTGGAATGCATCTTACTGTCCGCATGTCTTCAAGAA
TCAAGAGGCCTCTCGAAAACCACACGGGAGGAAACGAGACAGCTTCAGGA
AAGAAGAGAAAGCGAGAAGAATACGAGCAAAAAGACGGATTACTGAAAAC
GTGA
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protein sequence of Gchil9139.t1

>Gchil9139.t1 ID=Gchil9139.t1|Name=Gchil9139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=518bp
MKEKTGCELLRFLHHNQRSLSNAERAHRKYVITCLDKIVRQWVRSVAYLY
HVPLPERTEQLSRVFSFGSHALGVDGPGSDVDVVVLTPNFISRKEHFFGR
KGRVPCQFGNEGDSKTCMLDILYTIGQAEQIVALRDAYAPVIRFLFHGIN
VDMQCAPLAVHYLPFPLDVLDNSLIKDVDPGTSRSASGVRSDQAMIRSLP
KYDTFCSVLRMVKLWAKRRCIYSSLHGYLGGISWAILTARICQTYEGYSG
IRLLALFFKTYTAWDWSPFPLWRPVRMTFENCDGMWTNWDNWMPPSTYYQ
NPMQIICPVFPFTNTSYNVCGATHKVMMKEIERACEIMEQITRAHLTIDE
GLLQLVEMYPFDQSFPVYLVIDVKATEAKEYREWQNFVESRIRRLTYEME
QTSNLDDIRPFPDAVKSVCHKTRERTSSFFVGLGTLAFDEYPECTNSMLC
PSVKRAVRSWETIINSWNLKKSGMHLTVRMSSRIKRPLENHTGGNETASG
KKRKREEYEQKDGLLKT*
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mRNA from alignment at tig00004370_pilon:1986810..1988363-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9139.t1 ID=Gchil9139.t1|Name=Gchil9139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004370_pilon:1986810..1988363- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAAAAAACGGGTTGTGAACTTCTCAGATTCTTACATCATAATCA
AAGATCTTTATCAAATGCAGAACGAGCGCATCGGAAATATGTCATTACTT
GTTTGGATAAAATTGTTCGGCAATGGGTTCGAAGCGTTGCATACTTGTAT
CATGTTCCGCTTCCAGAGCGTACTGAACAGCTTTCACGAGTCTTCTCGTT
TGGCTCTCATGCACTGGGCGTTGATGGACCAGGATCTGATGTAGATGTTG
TCGTTCTCACCCCCAACTTTATTTCGAGAAAAGAGCATTTCTTTGGTCGC
AAGGGTCGAGTGCCTTGTCAATTTGGAAATGAAGGAGATTCTAAGACATG
TATGCTGGACATATTATACACTATAGGACAGGCCGAACAAATCGTGGCCC
TTCGAGATGCCTATGCACCCGTGATACGTTTCCTATTTCACGGGATCAAT
GTGGATATGCAATGTGCTCCTTTGGCTGTCCACTACCTTCCTTTCCCGCT
GGATGTTCTAGATAACTCACTTATCAAAGACGTCGATCCAGGTACAAGCC
GCAGTGCCTCAGGAGTCAGAAGCGATCAAGCTATGATACGCAGTCTTCCG
AAGTATGATACATTTTGCTCAGTGCTGAGAATGGTGAAACTGTGGGCGAA
ACGGCGTTGCATTTATTCGAGTTTGCATGGATATCTAGGTGGCATTTCTT
GGGCGATCCTAACAGCACGAATATGCCAAACGTATGAAGGATACTCTGGC
ATTCGGCTGCTGGCCCTGTTCTTCAAAACATATACTGCCTGGGATTGGAG
CCCATTTCCCTTGTGGCGGCCCGTTCGGATGACGTTTGAAAACTGTGACG
GGATGTGGACAAATTGGGACAATTGGATGCCGCCAAGCACATACTACCAA
AATCCAATGCAGATCATCTGTCCAGTCTTTCCCTTTACAAACACTTCTTA
CAATGTCTGCGGAGCAACTCATAAGGTCATGATGAAGGAAATTGAACGCG
CATGCGAAATTATGGAACAAATTACAAGAGCCCATCTAACCATAGATGAA
GGTCTTCTACAGCTTGTGGAAATGTATCCCTTTGACCAAAGCTTTCCTGT
CTACCTGGTTATAGACGTAAAAGCTACTGAGGCAAAAGAATACAGGGAGT
GGCAGAATTTCGTGGAATCGAGAATAAGAAGATTGACGTATGAGATGGAA
CAAACAAGCAACCTGGATGACATCAGACCGTTCCCAGACGCAGTAAAGTC
AGTTTGTCACAAGACCCGCGAAAGAACAAGCAGCTTCTTTGTTGGGCTTG
GAACCCTGGCATTCGATGAATACCCCGAGTGTACAAACTCTATGCTCTGC
CCTTCCGTTAAACGAGCCGTTCGAAGTTGGGAAACTATAATAAATTCATG
GAATCTCAAGAAGTCTGGAATGCATCTTACTGTCCGCATGTCTTCAAGAA
TCAAGAGGCCTCTCGAAAACCACACGGGAGGAAACGAGACAGCTTCAGGA
AAGAAGAGAAAGCGAGAAGAATACGAGCAAAAAGACGGATTACTGAAAAC
GTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1986810..1988363-

>Gchil9139.t1 ID=Gchil9139.t1|Name=Gchil9139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00004370_pilon:1986810..1988363- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAAAAAACGGGTTGTGAACTTCTCAGATTCTTACATCATAATCA
AAGATCTTTATCAAATGCAGAACGAGCGCATCGGAAATATGTCATTACTT
GTTTGGATAAAATTGTTCGGCAATGGGTTCGAAGCGTTGCATACTTGTAT
CATGTTCCGCTTCCAGAGCGTACTGAACAGCTTTCACGAGTCTTCTCGTT
TGGCTCTCATGCACTGGGCGTTGATGGACCAGGATCTGATGTAGATGTTG
TCGTTCTCACCCCCAACTTTATTTCGAGAAAAGAGCATTTCTTTGGTCGC
AAGGGTCGAGTGCCTTGTCAATTTGGAAATGAAGGAGATTCTAAGACATG
TATGCTGGACATATTATACACTATAGGACAGGCCGAACAAATCGTGGCCC
TTCGAGATGCCTATGCACCCGTGATACGTTTCCTATTTCACGGGATCAAT
GTGGATATGCAATGTGCTCCTTTGGCTGTCCACTACCTTCCTTTCCCGCT
GGATGTTCTAGATAACTCACTTATCAAAGACGTCGATCCAGGTACAAGCC
GCAGTGCCTCAGGAGTCAGAAGCGATCAAGCTATGATACGCAGTCTTCCG
AAGTATGATACATTTTGCTCAGTGCTGAGAATGGTGAAACTGTGGGCGAA
ACGGCGTTGCATTTATTCGAGTTTGCATGGATATCTAGGTGGCATTTCTT
GGGCGATCCTAACAGCACGAATATGCCAAACGTATGAAGGATACTCTGGC
ATTCGGCTGCTGGCCCTGTTCTTCAAAACATATACTGCCTGGGATTGGAG
CCCATTTCCCTTGTGGCGGCCCGTTCGGATGACGTTTGAAAACTGTGACG
GGATGTGGACAAATTGGGACAATTGGATGCCGCCAAGCACATACTACCAA
AATCCAATGCAGATCATCTGTCCAGTCTTTCCCTTTACAAACACTTCTTA
CAATGTCTGCGGAGCAACTCATAAGGTCATGATGAAGGAAATTGAACGCG
CATGCGAAATTATGGAACAAATTACAAGAGCCCATCTAACCATAGATGAA
GGTCTTCTACAGCTTGTGGAAATGTATCCCTTTGACCAAAGCTTTCCTGT
CTACCTGGTTATAGACGTAAAAGCTACTGAGGCAAAAGAATACAGGGAGT
GGCAGAATTTCGTGGAATCGAGAATAAGAAGATTGACGTATGAGATGGAA
CAAACAAGCAACCTGGATGACATCAGACCGTTCCCAGACGCAGTAAAGTC
AGTTTGTCACAAGACCCGCGAAAGAACAAGCAGCTTCTTTGTTGGGCTTG
GAACCCTGGCATTCGATGAATACCCCGAGTGTACAAACTCTATGCTCTGC
CCTTCCGTTAAACGAGCCGTTCGAAGTTGGGAAACTATAATAAATTCATG
GAATCTCAAGAAGTCTGGAATGCATCTTACTGTCCGCATGTCTTCAAGAA
TCAAGAGGCCTCTCGAAAACCACACGGGAGGAAACGAGACAGCTTCAGGA
AAGAAGAGAAAGCGAGAAGAATACGAGCAAAAAGACGGATTACTGAAAAC
GTGA
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