Gchil9136.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9136.t1
Unique NameGchil9136.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1981559..1982122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096PB56
PFAMsSpoU_methylase,SpoU_sub_bind
Max annot lvl3041|Chlorophyta
KEGG koko:K15507
Evalue9.51e-35
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota,37PZ8@33090|Viridiplantae,34KQ6@3041|Chlorophyta
DescriptionRNA 2'-O ribose methyltransferase substrate binding
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9136Gchil9136Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1981559..1982122 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9136.t1.start1Gchil9136.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1981559..1981561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9136.t1.CDS1Gchil9136.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1981559..1982122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9136.t1.exon1Gchil9136.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1981559..1982122 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9136.t1.stop1Gchil9136.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1982120..1982122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9136.t1Gchil9136.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1981559..1982122 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9136.t1 ID=Gchil9136.t1|Name=Gchil9136.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=188bp
MLNVLVGHRKHQGVAAQASTLDYVPERELHARDGVLVALDGVSDPHNVGA
VLRSAHFLGAEGVVVSARNCARLGAATSKASAGAAETVTAFATPSLPRLL
RRLREQGWRVVGLAADGTRPLRDVERVSRTVLVVGGEGDGLRALVRRECD
VLAAIDGGGRGAVDSLNLSVAAAIALHHLLPTPTDEC*
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spliced messenger RNA

>Gchil9136.t1 ID=Gchil9136.t1|Name=Gchil9136.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00004370_pilon:1981559..1982122+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACGTACTGGTGGGACACCGCAAGCATCAGGGCGTAGCAGCGCA
GGCCAGCACGCTGGACTATGTGCCGGAGCGCGAGCTGCACGCACGCGACG
GCGTGCTGGTGGCGCTGGACGGCGTGTCGGACCCGCACAACGTAGGCGCC
GTGCTGCGATCGGCGCACTTTCTGGGCGCGGAGGGGGTGGTGGTGTCGGC
TCGCAATTGCGCGCGACTGGGCGCGGCCACAAGCAAGGCATCGGCGGGCG
CGGCAGAGACGGTGACGGCGTTCGCCACGCCGTCGCTGCCGCGGCTGCTG
CGACGATTGCGCGAGCAGGGCTGGCGCGTGGTGGGGCTGGCGGCCGATGG
CACGCGGCCGTTGCGCGACGTCGAGCGCGTATCGCGCACGGTGCTGGTGG
TGGGCGGCGAGGGCGACGGGCTGCGCGCGCTGGTGCGGCGTGAGTGTGAC
GTGCTGGCCGCCATCGACGGCGGCGGTCGCGGCGCCGTCGACTCGCTCAA
CCTCAGCGTTGCCGCCGCCATCGCGCTGCACCATCTTTTGCCCACCCCAA
CCGACGAATGCTAA
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protein sequence of Gchil9136.t1

>Gchil9136.t1 ID=Gchil9136.t1|Name=Gchil9136.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=188bp
MLNVLVGHRKHQGVAAQASTLDYVPERELHARDGVLVALDGVSDPHNVGA
VLRSAHFLGAEGVVVSARNCARLGAATSKASAGAAETVTAFATPSLPRLL
RRLREQGWRVVGLAADGTRPLRDVERVSRTVLVVGGEGDGLRALVRRECD
VLAAIDGGGRGAVDSLNLSVAAAIALHHLLPTPTDEC*
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mRNA from alignment at tig00004370_pilon:1981559..1982122+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9136.t1 ID=Gchil9136.t1|Name=Gchil9136.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00004370_pilon:1981559..1982122+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAACGTACTGGTGGGACACCGCAAGCATCAGGGCGTAGCAGCGCA
GGCCAGCACGCTGGACTATGTGCCGGAGCGCGAGCTGCACGCACGCGACG
GCGTGCTGGTGGCGCTGGACGGCGTGTCGGACCCGCACAACGTAGGCGCC
GTGCTGCGATCGGCGCACTTTCTGGGCGCGGAGGGGGTGGTGGTGTCGGC
TCGCAATTGCGCGCGACTGGGCGCGGCCACAAGCAAGGCATCGGCGGGCG
CGGCAGAGACGGTGACGGCGTTCGCCACGCCGTCGCTGCCGCGGCTGCTG
CGACGATTGCGCGAGCAGGGCTGGCGCGTGGTGGGGCTGGCGGCCGATGG
CACGCGGCCGTTGCGCGACGTCGAGCGCGTATCGCGCACGGTGCTGGTGG
TGGGCGGCGAGGGCGACGGGCTGCGCGCGCTGGTGCGGCGTGAGTGTGAC
GTGCTGGCCGCCATCGACGGCGGCGGTCGCGGCGCCGTCGACTCGCTCAA
CCTCAGCGTTGCCGCCGCCATCGCGCTGCACCATCTTTTGCCCACCCCAA
CCGACGAATGCTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1981559..1982122+

>Gchil9136.t1 ID=Gchil9136.t1|Name=Gchil9136.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00004370_pilon:1981559..1982122+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAACGTACTGGTGGGACACCGCAAGCATCAGGGCGTAGCAGCGCA
GGCCAGCACGCTGGACTATGTGCCGGAGCGCGAGCTGCACGCACGCGACG
GCGTGCTGGTGGCGCTGGACGGCGTGTCGGACCCGCACAACGTAGGCGCC
GTGCTGCGATCGGCGCACTTTCTGGGCGCGGAGGGGGTGGTGGTGTCGGC
TCGCAATTGCGCGCGACTGGGCGCGGCCACAAGCAAGGCATCGGCGGGCG
CGGCAGAGACGGTGACGGCGTTCGCCACGCCGTCGCTGCCGCGGCTGCTG
CGACGATTGCGCGAGCAGGGCTGGCGCGTGGTGGGGCTGGCGGCCGATGG
CACGCGGCCGTTGCGCGACGTCGAGCGCGTATCGCGCACGGTGCTGGTGG
TGGGCGGCGAGGGCGACGGGCTGCGCGCGCTGGTGCGGCGTGAGTGTGAC
GTGCTGGCCGCCATCGACGGCGGCGGTCGCGGCGCCGTCGACTCGCTCAA
CCTCAGCGTTGCCGCCGCCATCGCGCTGCACCATCTTTTGCCCACCCCAA
CCGACGAATGCTAA
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