Gchil913.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil913.t1
Unique Name	Gchil913.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	580

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:1341383..1343122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil913	Gchil913	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 1341383..1343122 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil913.t1.start1	Gchil913.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 1341383..1341385 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil913.t1.CDS1	Gchil913.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 1341383..1343122 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil913.t1.exon1	Gchil913.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 1341383..1343122 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil913.t1.stop1	Gchil913.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 1343120..1343122 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil913.t1	Gchil913.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 1341383..1343122 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:1341383..1343122+
coding sequence from alignment at tig00000017_pilon:1341383..1343122+

mRNA sequence

>Gchil913.t1 ID=Gchil913.t1|Name=Gchil913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=580bp
MVSFPHSRKLMLFLLANYVLKKLLLLSVIMESRISLYEKAIKQQNNPQAM
VDLAVLYLYDKTIPIHVSRAMQLLRRAIHQYGYPYAMSSLASFYMKHGTP
SERLQVVALFERALRKEETTEFLSGLAYALMDDTCGKTDPKRAVQMWERI
LRLDEDAFWMEELALVLLRTPTFRSQKRRALKLYKGAIKLSNDAEMMNRL
GMCYGGGTSLQICCKCESKWYERAIKAGGSTAAKFNLALLLSGTGTPSWL
RDPRRAAQLVEDLYEKERTEEITLFLADLYSKVGEVLNCGRSLELYEMAA
FEFDSNLARNEICNLLLGSEHGLLDYARAVEFWRKDYERNRCAGSLRSMC
SILWSGATGVPRERRRALHLLQHETAEISAEEVSMQRFEVGAQGIDEVIL
ERLPKMVSMPLFGKLVQGIVLSERRSVEDKRLAEEVFRSILKDEARKDVF
VWMPLSLRRCAFDLPYHGGARCESSEVRRTGFMWAVARLNLGSLLLEKED
NKDGAVKAEAVKQYEKAMESNVRSMAMLNLGFVLWNGVGVVGAVGADKRR
GKALFERAADESSCALATELLERANPNAS*

spliced messenger RNA

>Gchil913.t1 ID=Gchil913.t1|Name=Gchil913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000017_pilon:1341383..1343122+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCTTTCCCACATTCAAGGAAGCTCATGCTTTTTTTGCTCGCTAA
TTATGTTCTCAAGAAGCTTCTCCTCTTAAGTGTCATAATGGAATCACGTA
TATCTCTTTATGAGAAGGCAATCAAGCAGCAAAATAATCCCCAAGCTATG
GTAGATCTGGCCGTATTGTACTTGTACGACAAAACAATACCCATCCACGT
TTCAAGAGCAATGCAATTGCTTCGACGAGCAATCCACCAATACGGATACC
CGTATGCTATGAGCTCTCTTGCCTCATTCTACATGAAACATGGAACCCCT
TCTGAGCGATTGCAAGTAGTCGCTCTCTTTGAACGTGCATTGAGGAAAGA
GGAAACCACCGAATTCTTATCAGGACTGGCCTATGCTCTCATGGACGATA
CGTGTGGCAAAACAGATCCAAAGAGAGCTGTTCAGATGTGGGAACGCATC
CTAAGATTAGACGAAGATGCATTTTGGATGGAAGAACTAGCGCTTGTATT
GCTGCGAACGCCAACGTTCAGAAGTCAGAAAAGAAGAGCTCTGAAACTGT
ATAAAGGAGCGATAAAACTTTCGAACGATGCCGAAATGATGAACAGGTTA
GGGATGTGTTATGGAGGTGGAACAAGCCTTCAAATTTGTTGCAAATGTGA
AAGCAAATGGTACGAACGAGCTATAAAGGCAGGAGGCTCTACTGCAGCAA
AATTCAATTTGGCTTTGTTACTGAGTGGAACTGGAACTCCAAGTTGGTTG
AGGGATCCAAGACGGGCCGCACAGCTTGTTGAAGATTTGTATGAAAAGGA
AAGAACTGAAGAAATCACACTTTTCCTGGCAGATTTGTATTCGAAAGTGG
GAGAAGTGTTGAATTGTGGTAGATCGTTGGAGCTGTACGAGATGGCTGCT
TTTGAATTTGATAGCAATCTTGCAAGAAACGAAATATGCAACTTGCTGCT
TGGTTCGGAACACGGACTACTTGATTATGCTAGAGCGGTTGAATTCTGGA
GGAAAGATTACGAGCGCAATAGATGTGCGGGCTCTCTTCGCTCGATGTGT
TCCATATTGTGGAGTGGGGCTACAGGAGTACCAAGAGAAAGGCGTCGGGC
GTTACATCTTCTCCAACATGAAACGGCTGAAATAAGTGCAGAAGAGGTGT
CAATGCAACGTTTCGAAGTAGGTGCGCAGGGAATTGATGAGGTGATTTTG
GAGCGGTTGCCAAAAATGGTATCGATGCCGCTGTTTGGGAAGCTGGTGCA
GGGAATTGTGTTGAGCGAGCGTCGTTCGGTTGAGGACAAGAGGCTTGCGG
AAGAAGTATTTCGAAGCATTTTGAAGGACGAAGCGAGGAAGGACGTGTTT
GTGTGGATGCCCTTGTCGCTGCGACGGTGTGCATTTGACTTGCCATATCA
CGGAGGCGCAAGGTGTGAAAGTAGCGAGGTGAGGCGAACGGGATTCATGT
GGGCTGTGGCGCGGCTGAACCTGGGAAGCTTGCTTCTCGAGAAAGAGGAC
AACAAGGACGGGGCGGTGAAGGCGGAAGCAGTGAAGCAGTACGAGAAGGC
GATGGAATCCAACGTGCGCTCGATGGCAATGCTGAACTTGGGCTTCGTGC
TATGGAACGGCGTGGGCGTGGTGGGCGCAGTTGGCGCGGACAAGCGGCGA
GGGAAGGCGCTCTTCGAGCGTGCCGCCGACGAAAGCAGCTGCGCGCTCGC
CACGGAGCTGTTGGAACGAGCAAACCCAAACGCAAGCTGA

protein sequence of Gchil913.t1

>Gchil913.t1 ID=Gchil913.t1|Name=Gchil913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=580bp
MVSFPHSRKLMLFLLANYVLKKLLLLSVIMESRISLYEKAIKQQNNPQAM
VDLAVLYLYDKTIPIHVSRAMQLLRRAIHQYGYPYAMSSLASFYMKHGTP
SERLQVVALFERALRKEETTEFLSGLAYALMDDTCGKTDPKRAVQMWERI
LRLDEDAFWMEELALVLLRTPTFRSQKRRALKLYKGAIKLSNDAEMMNRL
GMCYGGGTSLQICCKCESKWYERAIKAGGSTAAKFNLALLLSGTGTPSWL
RDPRRAAQLVEDLYEKERTEEITLFLADLYSKVGEVLNCGRSLELYEMAA
FEFDSNLARNEICNLLLGSEHGLLDYARAVEFWRKDYERNRCAGSLRSMC
SILWSGATGVPRERRRALHLLQHETAEISAEEVSMQRFEVGAQGIDEVIL
ERLPKMVSMPLFGKLVQGIVLSERRSVEDKRLAEEVFRSILKDEARKDVF
VWMPLSLRRCAFDLPYHGGARCESSEVRRTGFMWAVARLNLGSLLLEKED
NKDGAVKAEAVKQYEKAMESNVRSMAMLNLGFVLWNGVGVVGAVGADKRR
GKALFERAADESSCALATELLERANPNAS*

mRNA from alignment at tig00000017_pilon:1341383..1343122+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil913.t1 ID=Gchil913.t1|Name=Gchil913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000017_pilon:1341383..1343122+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCTTTCCCACATTCAAGGAAGCTCATGCTTTTTTTGCTCGCTAA
TTATGTTCTCAAGAAGCTTCTCCTCTTAAGTGTCATAATGGAATCACGTA
TATCTCTTTATGAGAAGGCAATCAAGCAGCAAAATAATCCCCAAGCTATG
GTAGATCTGGCCGTATTGTACTTGTACGACAAAACAATACCCATCCACGT
TTCAAGAGCAATGCAATTGCTTCGACGAGCAATCCACCAATACGGATACC
CGTATGCTATGAGCTCTCTTGCCTCATTCTACATGAAACATGGAACCCCT
TCTGAGCGATTGCAAGTAGTCGCTCTCTTTGAACGTGCATTGAGGAAAGA
GGAAACCACCGAATTCTTATCAGGACTGGCCTATGCTCTCATGGACGATA
CGTGTGGCAAAACAGATCCAAAGAGAGCTGTTCAGATGTGGGAACGCATC
CTAAGATTAGACGAAGATGCATTTTGGATGGAAGAACTAGCGCTTGTATT
GCTGCGAACGCCAACGTTCAGAAGTCAGAAAAGAAGAGCTCTGAAACTGT
ATAAAGGAGCGATAAAACTTTCGAACGATGCCGAAATGATGAACAGGTTA
GGGATGTGTTATGGAGGTGGAACAAGCCTTCAAATTTGTTGCAAATGTGA
AAGCAAATGGTACGAACGAGCTATAAAGGCAGGAGGCTCTACTGCAGCAA
AATTCAATTTGGCTTTGTTACTGAGTGGAACTGGAACTCCAAGTTGGTTG
AGGGATCCAAGACGGGCCGCACAGCTTGTTGAAGATTTGTATGAAAAGGA
AAGAACTGAAGAAATCACACTTTTCCTGGCAGATTTGTATTCGAAAGTGG
GAGAAGTGTTGAATTGTGGTAGATCGTTGGAGCTGTACGAGATGGCTGCT
TTTGAATTTGATAGCAATCTTGCAAGAAACGAAATATGCAACTTGCTGCT
TGGTTCGGAACACGGACTACTTGATTATGCTAGAGCGGTTGAATTCTGGA
GGAAAGATTACGAGCGCAATAGATGTGCGGGCTCTCTTCGCTCGATGTGT
TCCATATTGTGGAGTGGGGCTACAGGAGTACCAAGAGAAAGGCGTCGGGC
GTTACATCTTCTCCAACATGAAACGGCTGAAATAAGTGCAGAAGAGGTGT
CAATGCAACGTTTCGAAGTAGGTGCGCAGGGAATTGATGAGGTGATTTTG
GAGCGGTTGCCAAAAATGGTATCGATGCCGCTGTTTGGGAAGCTGGTGCA
GGGAATTGTGTTGAGCGAGCGTCGTTCGGTTGAGGACAAGAGGCTTGCGG
AAGAAGTATTTCGAAGCATTTTGAAGGACGAAGCGAGGAAGGACGTGTTT
GTGTGGATGCCCTTGTCGCTGCGACGGTGTGCATTTGACTTGCCATATCA
CGGAGGCGCAAGGTGTGAAAGTAGCGAGGTGAGGCGAACGGGATTCATGT
GGGCTGTGGCGCGGCTGAACCTGGGAAGCTTGCTTCTCGAGAAAGAGGAC
AACAAGGACGGGGCGGTGAAGGCGGAAGCAGTGAAGCAGTACGAGAAGGC
GATGGAATCCAACGTGCGCTCGATGGCAATGCTGAACTTGGGCTTCGTGC
TATGGAACGGCGTGGGCGTGGTGGGCGCAGTTGGCGCGGACAAGCGGCGA
GGGAAGGCGCTCTTCGAGCGTGCCGCCGACGAAAGCAGCTGCGCGCTCGC
CACGGAGCTGTTGGAACGAGCAAACCCAAACGCAAGCTGA

Coding sequence (CDS) from alignment at tig00000017_pilon:1341383..1343122+

>Gchil913.t1 ID=Gchil913.t1|Name=Gchil913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00000017_pilon:1341383..1343122+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCTTTCCCACATTCAAGGAAGCTCATGCTTTTTTTGCTCGCTAA
TTATGTTCTCAAGAAGCTTCTCCTCTTAAGTGTCATAATGGAATCACGTA
TATCTCTTTATGAGAAGGCAATCAAGCAGCAAAATAATCCCCAAGCTATG
GTAGATCTGGCCGTATTGTACTTGTACGACAAAACAATACCCATCCACGT
TTCAAGAGCAATGCAATTGCTTCGACGAGCAATCCACCAATACGGATACC
CGTATGCTATGAGCTCTCTTGCCTCATTCTACATGAAACATGGAACCCCT
TCTGAGCGATTGCAAGTAGTCGCTCTCTTTGAACGTGCATTGAGGAAAGA
GGAAACCACCGAATTCTTATCAGGACTGGCCTATGCTCTCATGGACGATA
CGTGTGGCAAAACAGATCCAAAGAGAGCTGTTCAGATGTGGGAACGCATC
CTAAGATTAGACGAAGATGCATTTTGGATGGAAGAACTAGCGCTTGTATT
GCTGCGAACGCCAACGTTCAGAAGTCAGAAAAGAAGAGCTCTGAAACTGT
ATAAAGGAGCGATAAAACTTTCGAACGATGCCGAAATGATGAACAGGTTA
GGGATGTGTTATGGAGGTGGAACAAGCCTTCAAATTTGTTGCAAATGTGA
AAGCAAATGGTACGAACGAGCTATAAAGGCAGGAGGCTCTACTGCAGCAA
AATTCAATTTGGCTTTGTTACTGAGTGGAACTGGAACTCCAAGTTGGTTG
AGGGATCCAAGACGGGCCGCACAGCTTGTTGAAGATTTGTATGAAAAGGA
AAGAACTGAAGAAATCACACTTTTCCTGGCAGATTTGTATTCGAAAGTGG
GAGAAGTGTTGAATTGTGGTAGATCGTTGGAGCTGTACGAGATGGCTGCT
TTTGAATTTGATAGCAATCTTGCAAGAAACGAAATATGCAACTTGCTGCT
TGGTTCGGAACACGGACTACTTGATTATGCTAGAGCGGTTGAATTCTGGA
GGAAAGATTACGAGCGCAATAGATGTGCGGGCTCTCTTCGCTCGATGTGT
TCCATATTGTGGAGTGGGGCTACAGGAGTACCAAGAGAAAGGCGTCGGGC
GTTACATCTTCTCCAACATGAAACGGCTGAAATAAGTGCAGAAGAGGTGT
CAATGCAACGTTTCGAAGTAGGTGCGCAGGGAATTGATGAGGTGATTTTG
GAGCGGTTGCCAAAAATGGTATCGATGCCGCTGTTTGGGAAGCTGGTGCA
GGGAATTGTGTTGAGCGAGCGTCGTTCGGTTGAGGACAAGAGGCTTGCGG
AAGAAGTATTTCGAAGCATTTTGAAGGACGAAGCGAGGAAGGACGTGTTT
GTGTGGATGCCCTTGTCGCTGCGACGGTGTGCATTTGACTTGCCATATCA
CGGAGGCGCAAGGTGTGAAAGTAGCGAGGTGAGGCGAACGGGATTCATGT
GGGCTGTGGCGCGGCTGAACCTGGGAAGCTTGCTTCTCGAGAAAGAGGAC
AACAAGGACGGGGCGGTGAAGGCGGAAGCAGTGAAGCAGTACGAGAAGGC
GATGGAATCCAACGTGCGCTCGATGGCAATGCTGAACTTGGGCTTCGTGC
TATGGAACGGCGTGGGCGTGGTGGGCGCAGTTGGCGCGGACAAGCGGCGA
GGGAAGGCGCTCTTCGAGCGTGCCGCCGACGAAAGCAGCTGCGCGCTCGC
CACGGAGCTGTTGGAACGAGCAAACCCAAACGCAAGCTGA