Gchil9125.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9125.t1
Unique NameGchil9125.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1956961..1958486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO93789
Max annot lvl2759|Eukaryota
Evalue7.47e-28
EggNOG OGs2CN8N@1|root,2S407@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9125Gchil9125Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1956961..1958486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9125.t1Gchil9125.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1956961..1958486 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9125.t1.stop1Gchil9125.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1956961..1956963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9125.t1.CDS1Gchil9125.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1956961..1957503 -
Gchil9125.t1.CDS2Gchil9125.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1957598..1957615 -
Gchil9125.t1.CDS3Gchil9125.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1957770..1958486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9125.t1.exon1Gchil9125.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1956961..1957503 -
Gchil9125.t1.exon2Gchil9125.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1957598..1957615 -
Gchil9125.t1.exon3Gchil9125.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1957770..1958486 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9125.t1.intron1Gchil9125.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1957504..1957597 -
Gchil9125.t1.intron2Gchil9125.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1957616..1957769 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9125.t1.start1Gchil9125.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1958484..1958486 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9125.t1 ID=Gchil9125.t1|Name=Gchil9125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MPRCATLHVPSPGGSSPTLHTFFFLRDLWKYLSPSLPVALVAIVSASILP
PVMNEKTGTSTMYSPWPVPEHSERPSIRDDVRRILYDNAFKPSATHYTLV
EDIYQLYLRHTTQTHSAQQHERFRSALGRVLHPPHSAGQYALSYKANVTR
WRQYISLVSPRCASIDMKHTVRQLKRDNALTRIERAKHSEHVAQLRTIRH
MRKEQRTEQQQHNPPQPLSFRYVDEFLALNCAEDLTRLKVFPNGKELAES
MSAYAAVRQFLVKHGPTHQEQAGVLSFSARSVTLVAVGDGVTPRTAAMFA
FRTSWKCISIDPMMRKGEWDNVKNLRTIAARVQDVTIDVECNSRVVIVMW
HCHTSILDSVSCLRFLEADLRERSFRQRVAVVSCACCNYDEVQKELPDGS
VPDVQFEDTGVPGLMRTVRVWRFLS*
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spliced messenger RNA

>Gchil9125.t1 ID=Gchil9125.t1|Name=Gchil9125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004370_pilon:1956961..1958486- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGTTGCGCCACGTTGCATGTGCCATCGCCGGGCGGCTCCTCGCC
AACTCTGCACACATTCTTCTTCCTCCGCGACTTGTGGAAGTACTTGTCTC
CATCTCTACCCGTCGCTCTCGTCGCAATTGTTTCTGCCTCGATCCTACCC
CCAGTCATGAACGAAAAAACTGGCACTAGCACCATGTACTCGCCATGGCC
TGTGCCGGAACACAGCGAGCGACCGTCCATTCGCGACGACGTGCGCCGCA
TTCTGTACGACAACGCATTCAAGCCCAGTGCCACCCACTACACCCTCGTC
GAAGACATATACCAGCTTTATCTTCGGCACACCACACAAACACATTCCGC
CCAGCAACACGAGCGCTTCCGCTCCGCGCTGGGCAGAGTGCTGCATCCGC
CGCACAGTGCGGGCCAGTACGCCCTATCATACAAGGCAAATGTCACAAGA
TGGAGGCAGTACATCTCGCTTGTCTCCCCGCGTTGCGCCTCCATTGATAT
GAAACATACCGTCAGACAGCTCAAGAGAGACAACGCCTTGACACGCATTG
AACGCGCCAAGCATAGCGAGCATGTCGCTCAGTTGAGGACAATTAGACAC
ATGAGAAAGGAGCAACGCACTGAGCAGCAGCAACACAACCCACCCCAGCC
TCTTAGCTTCAGATATGTTGATGAATTTCTTGCGCTAAACTGCGCCGAGG
ATCTCACCAGACTAAAGGTTTTCCCTAACGGCAAGGAACTTGCTGAATCA
ATGAGCGCGTACGCAGCAGTGAGACAGTTTCTCGTCAAACACGGCCCAAC
TCATCAAGAACAAGCCGGAGTGCTCTCGTTCTCAGCCCGCTCCGTCACGC
TTGTCGCAGTAGGTGATGGCGTAACCCCGAGGACTGCCGCCATGTTCGCT
TTTCGCACGTCCTGGAAATGCATTTCTATCGACCCCATGATGCGAAAGGG
CGAGTGGGATAACGTGAAAAACCTTCGCACCATAGCCGCCCGCGTGCAGG
ACGTTACCATCGACGTTGAATGTAATTCACGCGTTGTCATCGTCATGTGG
CATTGTCATACGTCTATACTTGATTCTGTTTCTTGTTTACGTTTTCTGGA
AGCGGATCTGAGAGAACGCTCTTTTCGACAACGCGTGGCTGTGGTCAGTT
GCGCCTGCTGTAACTATGATGAGGTGCAGAAAGAATTGCCGGATGGGTCT
GTTCCTGATGTGCAATTTGAAGATACGGGTGTGCCTGGACTCATGAGGAC
AGTTCGAGTTTGGAGGTTTTTGAGTTAG
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protein sequence of Gchil9125.t1

>Gchil9125.t1 ID=Gchil9125.t1|Name=Gchil9125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MPRCATLHVPSPGGSSPTLHTFFFLRDLWKYLSPSLPVALVAIVSASILP
PVMNEKTGTSTMYSPWPVPEHSERPSIRDDVRRILYDNAFKPSATHYTLV
EDIYQLYLRHTTQTHSAQQHERFRSALGRVLHPPHSAGQYALSYKANVTR
WRQYISLVSPRCASIDMKHTVRQLKRDNALTRIERAKHSEHVAQLRTIRH
MRKEQRTEQQQHNPPQPLSFRYVDEFLALNCAEDLTRLKVFPNGKELAES
MSAYAAVRQFLVKHGPTHQEQAGVLSFSARSVTLVAVGDGVTPRTAAMFA
FRTSWKCISIDPMMRKGEWDNVKNLRTIAARVQDVTIDVECNSRVVIVMW
HCHTSILDSVSCLRFLEADLRERSFRQRVAVVSCACCNYDEVQKELPDGS
VPDVQFEDTGVPGLMRTVRVWRFLS*
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mRNA from alignment at tig00004370_pilon:1956961..1958486-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9125.t1 ID=Gchil9125.t1|Name=Gchil9125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1526bp|location=Sequence derived from alignment at tig00004370_pilon:1956961..1958486- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACGTTGCGCCACGTTGCATGTGCCATCGCCGGGCGGCTCCTCGCC
AACTCTGCACACATTCTTCTTCCTCCGCGACTTGTGGAAGTACTTGTCTC
CATCTCTACCCGTCGCTCTCGTCGCAATTGTTTCTGCCTCGATCCTACCC
CCAGTCATGAACGAAAAAACTGGCACTAGCACCATGTACTCGCCATGGCC
TGTGCCGGAACACAGCGAGCGACCGTCCATTCGCGACGACGTGCGCCGCA
TTCTGTACGACAACGCATTCAAGCCCAGTGCCACCCACTACACCCTCGTC
GAAGACATATACCAGCTTTATCTTCGGCACACCACACAAACACATTCCGC
CCAGCAACACGAGCGCTTCCGCTCCGCGCTGGGCAGAGTGCTGCATCCGC
CGCACAGTGCGGGCCAGTACGCCCTATCATACAAGGCAAATGTCACAAGA
TGGAGGCAGTACATCTCGCTTGTCTCCCCGCGTTGCGCCTCCATTGATAT
GAAACATACCGTCAGACAGCTCAAGAGAGACAACGCCTTGACACGCATTG
AACGCGCCAAGCATAGCGAGCATGTCGCTCAGTTGAGGACAATTAGACAC
ATGAGAAAGGAGCAACGCACTGAGCAGCAGCAACACAACCCACCCCAGCC
TCTTAGCTTCAGATATGTTGATGAATTTCTTGCGCTAAACTGCGCCGAGG
ATCTCACCAGACTAAAGGTTCGCATTTCATACTTCCTCTTTTTTGCTTTG
CAAATTGTTTTTATATGTGCTTTTGGTACACTGCACCGGACCCACCTGTC
TACCGCCGTTCCATGTGGGGAGCTTCTAACATCGTCAATTACCGTATGTC
GTTCACTATCCCGTGTCACAGGTTTTCCCTAACGGCAAGGTAAGTCCCCG
ATTGTTGGAAAAAAGTGATGCTCCAACAGACAAGGACCACACCCAAGAGT
CTGACATGTGTCAAATCGTTTTTAACCACGCAGGAACTTGCTGAATCAAT
GAGCGCGTACGCAGCAGTGAGACAGTTTCTCGTCAAACACGGCCCAACTC
ATCAAGAACAAGCCGGAGTGCTCTCGTTCTCAGCCCGCTCCGTCACGCTT
GTCGCAGTAGGTGATGGCGTAACCCCGAGGACTGCCGCCATGTTCGCTTT
TCGCACGTCCTGGAAATGCATTTCTATCGACCCCATGATGCGAAAGGGCG
AGTGGGATAACGTGAAAAACCTTCGCACCATAGCCGCCCGCGTGCAGGAC
GTTACCATCGACGTTGAATGTAATTCACGCGTTGTCATCGTCATGTGGCA
TTGTCATACGTCTATACTTGATTCTGTTTCTTGTTTACGTTTTCTGGAAG
CGGATCTGAGAGAACGCTCTTTTCGACAACGCGTGGCTGTGGTCAGTTGC
GCCTGCTGTAACTATGATGAGGTGCAGAAAGAATTGCCGGATGGGTCTGT
TCCTGATGTGCAATTTGAAGATACGGGTGTGCCTGGACTCATGAGGACAG
TTCGAGTTTGGAGGTTTTTGAGTTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:1956961..1958486-

>Gchil9125.t1 ID=Gchil9125.t1|Name=Gchil9125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004370_pilon:1956961..1958486- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACGTTGCGCCACGTTGCATGTGCCATCGCCGGGCGGCTCCTCGCC
AACTCTGCACACATTCTTCTTCCTCCGCGACTTGTGGAAGTACTTGTCTC
CATCTCTACCCGTCGCTCTCGTCGCAATTGTTTCTGCCTCGATCCTACCC
CCAGTCATGAACGAAAAAACTGGCACTAGCACCATGTACTCGCCATGGCC
TGTGCCGGAACACAGCGAGCGACCGTCCATTCGCGACGACGTGCGCCGCA
TTCTGTACGACAACGCATTCAAGCCCAGTGCCACCCACTACACCCTCGTC
GAAGACATATACCAGCTTTATCTTCGGCACACCACACAAACACATTCCGC
CCAGCAACACGAGCGCTTCCGCTCCGCGCTGGGCAGAGTGCTGCATCCGC
CGCACAGTGCGGGCCAGTACGCCCTATCATACAAGGCAAATGTCACAAGA
TGGAGGCAGTACATCTCGCTTGTCTCCCCGCGTTGCGCCTCCATTGATAT
GAAACATACCGTCAGACAGCTCAAGAGAGACAACGCCTTGACACGCATTG
AACGCGCCAAGCATAGCGAGCATGTCGCTCAGTTGAGGACAATTAGACAC
ATGAGAAAGGAGCAACGCACTGAGCAGCAGCAACACAACCCACCCCAGCC
TCTTAGCTTCAGATATGTTGATGAATTTCTTGCGCTAAACTGCGCCGAGG
ATCTCACCAGACTAAAGGTTTTCCCTAACGGCAAGGAACTTGCTGAATCA
ATGAGCGCGTACGCAGCAGTGAGACAGTTTCTCGTCAAACACGGCCCAAC
TCATCAAGAACAAGCCGGAGTGCTCTCGTTCTCAGCCCGCTCCGTCACGC
TTGTCGCAGTAGGTGATGGCGTAACCCCGAGGACTGCCGCCATGTTCGCT
TTTCGCACGTCCTGGAAATGCATTTCTATCGACCCCATGATGCGAAAGGG
CGAGTGGGATAACGTGAAAAACCTTCGCACCATAGCCGCCCGCGTGCAGG
ACGTTACCATCGACGTTGAATGTAATTCACGCGTTGTCATCGTCATGTGG
CATTGTCATACGTCTATACTTGATTCTGTTTCTTGTTTACGTTTTCTGGA
AGCGGATCTGAGAGAACGCTCTTTTCGACAACGCGTGGCTGTGGTCAGTT
GCGCCTGCTGTAACTATGATGAGGTGCAGAAAGAATTGCCGGATGGGTCT
GTTCCTGATGTGCAATTTGAAGATACGGGTGTGCCTGGACTCATGAGGAC
AGTTCGAGTTTGGAGGTTTTTGAGTTAG
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