Gchil9124.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9124.t1
Unique NameGchil9124.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1950180..1951928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705792.1
Preferred nameAIFM1
PFAMsAIF-MLS,AIF_C,Pyr_redox_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00176
KEGG koko:K04727,ko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,ko04210,ko04214,ko04217,map00910,map01120,map04210,map04214,map04217
KEGG ModuleM00531
GOsGO:0000166,GO:0000302,GO:0000737,GO:0001101,GO:0002931,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004174,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006308,GO:0006309,GO:0006323,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006921,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009056,GO:0009057,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010257,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0015980,GO:0016020,GO:0016043,GO:0016174,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016651,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0019899,GO:0022008,GO:0022411,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030154,GO:0030162,GO:0030182,GO:0030261,GO:0030262,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032355,GO:0032368,GO:0032370,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032981,GO:0033108,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034655,GO:0034976,GO:0035556,GO:0035690,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042493,GO:0042542,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043933,GO:0044070,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046677,GO:0046700,GO:0048037,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050660,GO:0050662,GO:0050664,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0051385,GO:0051402,GO:0051704,GO:0051707,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070059,GO:0070301,GO:0070482,GO:0070887,GO:0070997,GO:0071103,GO:0071236,GO:0071241,GO:0071310,GO:0071383,GO:0071384,GO:0071389,GO:0071392,GO:0071396,GO:0071407,GO:0071453,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0071949,GO:0072521,GO:0080090,GO:0090304,GO:0090305,GO:0090649,GO:0090650,GO:0097035,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097305,GO:0097306,GO:0097366,GO:0098542,GO:0098588,GO:0098805,GO:0110096,GO:1900117,GO:1900119,GO:1900161,GO:1900163,GO:1901135,GO:1901214,GO:1901216,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902065,GO:1902170,GO:1902510,GO:1903624,GO:1903729,GO:1903793,GO:1904044,GO:1904045,GO:1905780,GO:1905782,GO:1905952,GO:1905954,GO:2000116,GO:2001056,GO:2001138,GO:2001140
Evalue1.22e-89
EggNOG OGsCOG0446@1|root,KOG1346@2759|Eukaryota
EC1.7.1.4
Descriptionapoptosis-inducing factor
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9124Gchil9124Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1950180..1951928 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9124.t1.start1Gchil9124.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1950180..1950182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9124.t1.CDS1Gchil9124.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1950180..1951928 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9124.t1.exon1Gchil9124.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1950180..1951928 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9124.t1.stop1Gchil9124.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1951926..1951928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9124.t1Gchil9124.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1950180..1951928 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9124.t1 ID=Gchil9124.t1|Name=Gchil9124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=583bp
MRLLASRRALGALLIAASPPALALSEPSAAAPSPPAAAPSPPAAAPSLSP
AAPPSSPAQLRAARKLLQRYYALSAEALQHAAASDRRPAAAPPSSSSSPS
PLRKQRTPAERVFRLLPADALAAPACIKYLIVGGGTAAWAAIDSILHHDP
RAANQILLVSDESYLPYNRTMLSKELFDPNHLHAVVSPSELQYAYKHFHR
TAPNAAVSVANDTAVLLDPDLKLVQLASGRRLTYDKLLLATGGAPRPALS
VTHALQAPHIKQHVSTFRTLQHYQTLRATLQQPNQSVAVVGGGFLGTELA
LALTALSDNVSLVITEPGVLFRVLPRYLCQFLATKLHHAGVNVVKSAVIT
TATPSAENHQNVTLHIDAAEPTQLDVNHIVVAVGIEPSTQLATTAGLEID
PDNSGIRVNDFMMVEPDIFAAGDVASFHDRTLGRRRVEHWDHAVVSGSIA
GANMTGARERYQLQSMFWSDLSAIDVHFTAVGLVDSALQTLSVWNLATEA
NHDLPSLNQYQSGVVYYLNDRSEIVGVVLWNPTKGSGALRRARALVDAKT
NVQRLNEHTLAALVNLETGQYRHTIRTKSATG*
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spliced messenger RNA

>Gchil9124.t1 ID=Gchil9124.t1|Name=Gchil9124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004370_pilon:1950180..1951928+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTTCTCGCGTCGCGCCGCGCGCTCGGCGCGCTGCTCATCGCCGC
TTCGCCGCCCGCGCTCGCGCTCTCGGAGCCGTCTGCTGCCGCCCCATCGC
CGCCCGCTGCCGCCCCATCGCCGCCCGCCGCCGCCCCATCGTTGTCGCCC
GCCGCGCCGCCCTCGTCTCCGGCCCAACTGCGCGCCGCCAGAAAGCTCTT
GCAGCGCTACTACGCCCTGTCCGCCGAGGCGCTGCAGCACGCCGCCGCCT
CGGATCGCCGCCCCGCCGCTGCCCCGCCTTCTTCTTCCTCTTCGCCGTCG
CCGCTGCGAAAGCAGCGCACGCCCGCCGAGCGCGTGTTTCGCCTGCTGCC
CGCCGACGCCCTCGCCGCGCCGGCCTGCATCAAGTACCTCATCGTTGGCG
GCGGCACCGCCGCCTGGGCCGCCATCGATTCCATTCTGCATCATGATCCG
CGCGCCGCCAACCAAATCTTGCTCGTCTCCGATGAGTCCTACCTCCCGTA
CAACCGCACCATGCTGTCAAAGGAGCTTTTCGATCCCAATCACTTGCACG
CCGTCGTTTCGCCCTCCGAGTTGCAGTACGCATACAAACATTTCCACCGG
ACAGCTCCCAACGCCGCCGTGTCCGTCGCCAACGACACCGCCGTGCTCTT
GGACCCGGATCTCAAGCTTGTGCAACTGGCGTCCGGCCGCCGCCTCACCT
ACGACAAGCTACTGCTCGCCACCGGTGGTGCACCGCGCCCTGCCCTCTCT
GTCACGCACGCCTTGCAAGCCCCACACATCAAACAACATGTCTCTACGTT
TCGTACGCTGCAACACTACCAGACGTTGCGAGCAACGCTGCAACAGCCCA
ATCAATCCGTTGCCGTCGTGGGCGGAGGCTTTTTGGGCACCGAGCTTGCC
CTCGCCCTCACTGCTCTGTCGGACAACGTTTCGCTCGTGATCACCGAGCC
GGGTGTCCTCTTCCGCGTTCTTCCTCGCTACTTGTGCCAATTCCTCGCCA
CAAAGCTCCATCACGCTGGCGTCAACGTCGTCAAGAGCGCTGTCATAACC
ACTGCCACCCCGTCTGCAGAGAACCATCAAAACGTCACCTTGCACATCGA
TGCCGCCGAACCAACCCAACTTGACGTCAACCACATTGTTGTCGCCGTCG
GCATTGAGCCTTCCACACAGCTTGCCACTACCGCGGGCTTGGAAATCGAT
CCCGACAACTCTGGCATCCGAGTTAATGATTTCATGATGGTGGAACCAGA
CATCTTTGCTGCCGGCGACGTCGCCTCCTTTCATGACCGCACTTTGGGTC
GTCGTCGCGTCGAACACTGGGATCATGCTGTAGTCAGTGGCAGCATTGCA
GGCGCCAACATGACTGGTGCCCGCGAACGATATCAGTTACAGTCTATGTT
CTGGAGCGACTTGTCAGCAATTGACGTCCATTTTACTGCCGTTGGACTTG
TGGACTCTGCGCTGCAAACACTTTCCGTATGGAACCTGGCCACTGAGGCC
AATCATGACCTCCCGTCGCTCAACCAATACCAATCTGGTGTCGTGTATTA
CCTCAACGATAGAAGCGAAATCGTTGGTGTCGTGCTTTGGAATCCAACCA
AAGGCTCTGGCGCTTTGCGACGCGCGAGGGCCTTGGTCGACGCCAAGACC
AATGTTCAGCGTCTTAACGAACATACCTTGGCCGCACTGGTCAATCTTGA
AACCGGCCAATATCGCCACACCATACGAACAAAATCCGCCACTGGGTGA
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protein sequence of Gchil9124.t1

>Gchil9124.t1 ID=Gchil9124.t1|Name=Gchil9124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=583bp
MRLLASRRALGALLIAASPPALALSEPSAAAPSPPAAAPSPPAAAPSLSP
AAPPSSPAQLRAARKLLQRYYALSAEALQHAAASDRRPAAAPPSSSSSPS
PLRKQRTPAERVFRLLPADALAAPACIKYLIVGGGTAAWAAIDSILHHDP
RAANQILLVSDESYLPYNRTMLSKELFDPNHLHAVVSPSELQYAYKHFHR
TAPNAAVSVANDTAVLLDPDLKLVQLASGRRLTYDKLLLATGGAPRPALS
VTHALQAPHIKQHVSTFRTLQHYQTLRATLQQPNQSVAVVGGGFLGTELA
LALTALSDNVSLVITEPGVLFRVLPRYLCQFLATKLHHAGVNVVKSAVIT
TATPSAENHQNVTLHIDAAEPTQLDVNHIVVAVGIEPSTQLATTAGLEID
PDNSGIRVNDFMMVEPDIFAAGDVASFHDRTLGRRRVEHWDHAVVSGSIA
GANMTGARERYQLQSMFWSDLSAIDVHFTAVGLVDSALQTLSVWNLATEA
NHDLPSLNQYQSGVVYYLNDRSEIVGVVLWNPTKGSGALRRARALVDAKT
NVQRLNEHTLAALVNLETGQYRHTIRTKSATG*
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mRNA from alignment at tig00004370_pilon:1950180..1951928+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9124.t1 ID=Gchil9124.t1|Name=Gchil9124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004370_pilon:1950180..1951928+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTTCTCGCGTCGCGCCGCGCGCTCGGCGCGCTGCTCATCGCCGC
TTCGCCGCCCGCGCTCGCGCTCTCGGAGCCGTCTGCTGCCGCCCCATCGC
CGCCCGCTGCCGCCCCATCGCCGCCCGCCGCCGCCCCATCGTTGTCGCCC
GCCGCGCCGCCCTCGTCTCCGGCCCAACTGCGCGCCGCCAGAAAGCTCTT
GCAGCGCTACTACGCCCTGTCCGCCGAGGCGCTGCAGCACGCCGCCGCCT
CGGATCGCCGCCCCGCCGCTGCCCCGCCTTCTTCTTCCTCTTCGCCGTCG
CCGCTGCGAAAGCAGCGCACGCCCGCCGAGCGCGTGTTTCGCCTGCTGCC
CGCCGACGCCCTCGCCGCGCCGGCCTGCATCAAGTACCTCATCGTTGGCG
GCGGCACCGCCGCCTGGGCCGCCATCGATTCCATTCTGCATCATGATCCG
CGCGCCGCCAACCAAATCTTGCTCGTCTCCGATGAGTCCTACCTCCCGTA
CAACCGCACCATGCTGTCAAAGGAGCTTTTCGATCCCAATCACTTGCACG
CCGTCGTTTCGCCCTCCGAGTTGCAGTACGCATACAAACATTTCCACCGG
ACAGCTCCCAACGCCGCCGTGTCCGTCGCCAACGACACCGCCGTGCTCTT
GGACCCGGATCTCAAGCTTGTGCAACTGGCGTCCGGCCGCCGCCTCACCT
ACGACAAGCTACTGCTCGCCACCGGTGGTGCACCGCGCCCTGCCCTCTCT
GTCACGCACGCCTTGCAAGCCCCACACATCAAACAACATGTCTCTACGTT
TCGTACGCTGCAACACTACCAGACGTTGCGAGCAACGCTGCAACAGCCCA
ATCAATCCGTTGCCGTCGTGGGCGGAGGCTTTTTGGGCACCGAGCTTGCC
CTCGCCCTCACTGCTCTGTCGGACAACGTTTCGCTCGTGATCACCGAGCC
GGGTGTCCTCTTCCGCGTTCTTCCTCGCTACTTGTGCCAATTCCTCGCCA
CAAAGCTCCATCACGCTGGCGTCAACGTCGTCAAGAGCGCTGTCATAACC
ACTGCCACCCCGTCTGCAGAGAACCATCAAAACGTCACCTTGCACATCGA
TGCCGCCGAACCAACCCAACTTGACGTCAACCACATTGTTGTCGCCGTCG
GCATTGAGCCTTCCACACAGCTTGCCACTACCGCGGGCTTGGAAATCGAT
CCCGACAACTCTGGCATCCGAGTTAATGATTTCATGATGGTGGAACCAGA
CATCTTTGCTGCCGGCGACGTCGCCTCCTTTCATGACCGCACTTTGGGTC
GTCGTCGCGTCGAACACTGGGATCATGCTGTAGTCAGTGGCAGCATTGCA
GGCGCCAACATGACTGGTGCCCGCGAACGATATCAGTTACAGTCTATGTT
CTGGAGCGACTTGTCAGCAATTGACGTCCATTTTACTGCCGTTGGACTTG
TGGACTCTGCGCTGCAAACACTTTCCGTATGGAACCTGGCCACTGAGGCC
AATCATGACCTCCCGTCGCTCAACCAATACCAATCTGGTGTCGTGTATTA
CCTCAACGATAGAAGCGAAATCGTTGGTGTCGTGCTTTGGAATCCAACCA
AAGGCTCTGGCGCTTTGCGACGCGCGAGGGCCTTGGTCGACGCCAAGACC
AATGTTCAGCGTCTTAACGAACATACCTTGGCCGCACTGGTCAATCTTGA
AACCGGCCAATATCGCCACACCATACGAACAAAATCCGCCACTGGGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1950180..1951928+

>Gchil9124.t1 ID=Gchil9124.t1|Name=Gchil9124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00004370_pilon:1950180..1951928+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTTCTCGCGTCGCGCCGCGCGCTCGGCGCGCTGCTCATCGCCGC
TTCGCCGCCCGCGCTCGCGCTCTCGGAGCCGTCTGCTGCCGCCCCATCGC
CGCCCGCTGCCGCCCCATCGCCGCCCGCCGCCGCCCCATCGTTGTCGCCC
GCCGCGCCGCCCTCGTCTCCGGCCCAACTGCGCGCCGCCAGAAAGCTCTT
GCAGCGCTACTACGCCCTGTCCGCCGAGGCGCTGCAGCACGCCGCCGCCT
CGGATCGCCGCCCCGCCGCTGCCCCGCCTTCTTCTTCCTCTTCGCCGTCG
CCGCTGCGAAAGCAGCGCACGCCCGCCGAGCGCGTGTTTCGCCTGCTGCC
CGCCGACGCCCTCGCCGCGCCGGCCTGCATCAAGTACCTCATCGTTGGCG
GCGGCACCGCCGCCTGGGCCGCCATCGATTCCATTCTGCATCATGATCCG
CGCGCCGCCAACCAAATCTTGCTCGTCTCCGATGAGTCCTACCTCCCGTA
CAACCGCACCATGCTGTCAAAGGAGCTTTTCGATCCCAATCACTTGCACG
CCGTCGTTTCGCCCTCCGAGTTGCAGTACGCATACAAACATTTCCACCGG
ACAGCTCCCAACGCCGCCGTGTCCGTCGCCAACGACACCGCCGTGCTCTT
GGACCCGGATCTCAAGCTTGTGCAACTGGCGTCCGGCCGCCGCCTCACCT
ACGACAAGCTACTGCTCGCCACCGGTGGTGCACCGCGCCCTGCCCTCTCT
GTCACGCACGCCTTGCAAGCCCCACACATCAAACAACATGTCTCTACGTT
TCGTACGCTGCAACACTACCAGACGTTGCGAGCAACGCTGCAACAGCCCA
ATCAATCCGTTGCCGTCGTGGGCGGAGGCTTTTTGGGCACCGAGCTTGCC
CTCGCCCTCACTGCTCTGTCGGACAACGTTTCGCTCGTGATCACCGAGCC
GGGTGTCCTCTTCCGCGTTCTTCCTCGCTACTTGTGCCAATTCCTCGCCA
CAAAGCTCCATCACGCTGGCGTCAACGTCGTCAAGAGCGCTGTCATAACC
ACTGCCACCCCGTCTGCAGAGAACCATCAAAACGTCACCTTGCACATCGA
TGCCGCCGAACCAACCCAACTTGACGTCAACCACATTGTTGTCGCCGTCG
GCATTGAGCCTTCCACACAGCTTGCCACTACCGCGGGCTTGGAAATCGAT
CCCGACAACTCTGGCATCCGAGTTAATGATTTCATGATGGTGGAACCAGA
CATCTTTGCTGCCGGCGACGTCGCCTCCTTTCATGACCGCACTTTGGGTC
GTCGTCGCGTCGAACACTGGGATCATGCTGTAGTCAGTGGCAGCATTGCA
GGCGCCAACATGACTGGTGCCCGCGAACGATATCAGTTACAGTCTATGTT
CTGGAGCGACTTGTCAGCAATTGACGTCCATTTTACTGCCGTTGGACTTG
TGGACTCTGCGCTGCAAACACTTTCCGTATGGAACCTGGCCACTGAGGCC
AATCATGACCTCCCGTCGCTCAACCAATACCAATCTGGTGTCGTGTATTA
CCTCAACGATAGAAGCGAAATCGTTGGTGTCGTGCTTTGGAATCCAACCA
AAGGCTCTGGCGCTTTGCGACGCGCGAGGGCCTTGGTCGACGCCAAGACC
AATGTTCAGCGTCTTAACGAACATACCTTGGCCGCACTGGTCAATCTTGA
AACCGGCCAATATCGCCACACCATACGAACAAAATCCGCCACTGGGTGA
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