Gchil9122.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9122.t1
Unique NameGchil9122.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1946597..1947015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9122Gchil9122Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1946597..1947015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9122.t1Gchil9122.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1946597..1947015 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9122.t1.start1Gchil9122.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1946597..1946599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9122.t1.CDS1Gchil9122.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1946597..1946810 +
Gchil9122.t1.CDS2Gchil9122.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1946966..1947015 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9122.t1.exon1Gchil9122.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1946597..1946810 +
Gchil9122.t1.exon2Gchil9122.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1946966..1947015 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9122.t1.intron1Gchil9122.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1946811..1946965 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9122.t1.stop1Gchil9122.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1947013..1947015 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9122.t1 ID=Gchil9122.t1|Name=Gchil9122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=88bp
MGQQVVRCMMMGNLKAFSSNMAKTTLAAESLLFDFYFIAQHVWFYPDHTD
VDVIGIKVGAHEDLEKGHKRNDRKYTWRRIWNLHRAD*
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spliced messenger RNA

>Gchil9122.t1 ID=Gchil9122.t1|Name=Gchil9122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00004370_pilon:1946597..1947015+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCAGCAGGTGGTACGTTGCATGATGATGGGAAATTTGAAAGCGTT
CAGCAGCAACATGGCCAAGACGACACTTGCGGCGGAGTCTCTGTTATTTG
ACTTTTACTTCATCGCGCAGCACGTGTGGTTCTATCCGGACCACACCGAC
GTGGACGTGATTGGCATCAAGGTGGGGGCGCACGAAGACTTGGAGAAAGG
GCACAAACGAAACGACAGGAAGTATACATGGAGACGAATTTGGAATTTGC
ATCGCGCCGATTAA
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protein sequence of Gchil9122.t1

>Gchil9122.t1 ID=Gchil9122.t1|Name=Gchil9122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=88bp
MGQQVVRCMMMGNLKAFSSNMAKTTLAAESLLFDFYFIAQHVWFYPDHTD
VDVIGIKVGAHEDLEKGHKRNDRKYTWRRIWNLHRAD*
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mRNA from alignment at tig00004370_pilon:1946597..1947015+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9122.t1 ID=Gchil9122.t1|Name=Gchil9122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=419bp|location=Sequence derived from alignment at tig00004370_pilon:1946597..1947015+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCAGCAGGTGGTACGTTGCATGATGATGGGAAATTTGAAAGCGTT
CAGCAGCAACATGGCCAAGACGACACTTGCGGCGGAGTCTCTGTTATTTG
ACTTTTACTTCATCGCGCAGCACGTGTGGTTCTATCCGGACCACACCGAC
GTGGACGTGATTGGCATCAAGGTGGGGGCGCACGAAGACTTGGAGAAAGG
GCACAAACGAAACGGTGAGGATGATGACGTGCCACTAATGAATGCTACGG
ATTTGCTAGCATCTAACAATGTTACATCACAATCTGGTACACACATGCAG
TACCAAGGTAGATACACAGCAGCGTTCTGACCGTTTTTCGTTGCTGGTTT
GTTGTTGATGTTTGTGCAGACAGGAAGTATACATGGAGACGAATTTGGAA
TTTGCATCGCGCCGATTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1946597..1947015+

>Gchil9122.t1 ID=Gchil9122.t1|Name=Gchil9122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00004370_pilon:1946597..1947015+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCAGCAGGTGGTACGTTGCATGATGATGGGAAATTTGAAAGCGTT
CAGCAGCAACATGGCCAAGACGACACTTGCGGCGGAGTCTCTGTTATTTG
ACTTTTACTTCATCGCGCAGCACGTGTGGTTCTATCCGGACCACACCGAC
GTGGACGTGATTGGCATCAAGGTGGGGGCGCACGAAGACTTGGAGAAAGG
GCACAAACGAAACGACAGGAAGTATACATGGAGACGAATTTGGAATTTGC
ATCGCGCCGATTAA
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