Gchil9121.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9121.t1
Unique NameGchil9121.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1944666..1945529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_01001T0
PFAMsPQ-loop
Max annot lvl4751|Fungi
KEGG koko:K12386
KEGG Pathwayko04142,map04142
Evalue3.35e-46
EggNOG OGsKOG3145@1|root,KOG3145@2759|Eukaryota,38D22@33154|Opisthokonta,3NXFU@4751|Fungi,1GV0R@112252|Fungi incertae sedis
DescriptionRepeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.
COG categoryE
BRITEko00000,ko00001,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9121Gchil9121Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1944666..1945529 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9121.t1.stop1Gchil9121.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1944666..1944668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9121.t1.CDS1Gchil9121.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1944666..1945529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9121.t1.exon1Gchil9121.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1944666..1945529 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9121.t1.start1Gchil9121.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1945527..1945529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9121.t1Gchil9121.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1944666..1945529 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9121.t1 ID=Gchil9121.t1|Name=Gchil9121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=288bp
MTVLTVFHSLFGWVYFFAWSACFWPQVLLNHRRRTTSGLSPDFVALNILG
FVAYAIFTFASLFDTKVKQSYENNAGYAPQVEINDAFFAAHGVFICSVLA
LQSFTYPPHLPPHRYTTVSVIITLNLIILGLFGSITGALQWYTYLRFNGA
VKVISSIIKHIPQVYSNYHRSSTVGFSITLVILDVIGSVFSLAQQALLCV
MEGNLTPFTGNLAKTTLAGEALLFDIYFIVQHVCFYPDHTDVDVLGMKRQ
VEHTTMEGQVTVHAGGDGFEDTREGHELERLLDDTEQ*
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spliced messenger RNA

>Gchil9121.t1 ID=Gchil9121.t1|Name=Gchil9121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004370_pilon:1944666..1945529- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGTTTTAACCGTTTTCCACTCTCTGTTCGGGTGGGTTTACTTTTT
CGCTTGGTCTGCATGCTTCTGGCCGCAGGTGCTTCTAAATCATCGTCGTC
GCACGACATCGGGGCTGTCGCCCGACTTTGTTGCGCTCAACATACTAGGT
TTCGTAGCATATGCCATATTCACTTTTGCTTCTTTGTTTGACACCAAAGT
CAAACAATCATACGAAAACAACGCGGGCTATGCTCCACAAGTTGAGATCA
ACGACGCCTTTTTTGCGGCACATGGCGTGTTTATATGCTCCGTGCTCGCG
CTACAAAGCTTTACGTACCCACCACATTTACCTCCGCACCGCTATACCAC
TGTTTCGGTCATAATCACCCTAAACCTCATTATTCTTGGATTGTTTGGCT
CCATCACTGGTGCGCTTCAGTGGTACACGTATCTGCGATTTAACGGCGCC
GTCAAGGTGATTTCCAGCATTATCAAGCACATCCCTCAAGTGTACTCAAA
TTATCACCGTTCAAGCACGGTTGGATTCAGCATTACGCTGGTTATACTAG
ATGTAATCGGGAGTGTTTTCAGCCTTGCGCAACAAGCTCTGCTCTGCGTG
ATGGAGGGCAACCTCACCCCGTTCACAGGTAATCTGGCCAAGACCACGCT
CGCTGGCGAAGCGCTGTTGTTTGACATTTACTTTATAGTGCAGCATGTGT
GCTTCTATCCAGATCATACGGACGTGGACGTGCTTGGCATGAAACGACAG
GTTGAGCACACGACGATGGAGGGGCAAGTCACGGTGCATGCAGGCGGTGA
TGGCTTTGAGGACACGCGAGAGGGGCATGAATTGGAGAGACTGCTGGATG
ACACGGAGCAATGA
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protein sequence of Gchil9121.t1

>Gchil9121.t1 ID=Gchil9121.t1|Name=Gchil9121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=288bp
MTVLTVFHSLFGWVYFFAWSACFWPQVLLNHRRRTTSGLSPDFVALNILG
FVAYAIFTFASLFDTKVKQSYENNAGYAPQVEINDAFFAAHGVFICSVLA
LQSFTYPPHLPPHRYTTVSVIITLNLIILGLFGSITGALQWYTYLRFNGA
VKVISSIIKHIPQVYSNYHRSSTVGFSITLVILDVIGSVFSLAQQALLCV
MEGNLTPFTGNLAKTTLAGEALLFDIYFIVQHVCFYPDHTDVDVLGMKRQ
VEHTTMEGQVTVHAGGDGFEDTREGHELERLLDDTEQ*
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mRNA from alignment at tig00004370_pilon:1944666..1945529-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9121.t1 ID=Gchil9121.t1|Name=Gchil9121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004370_pilon:1944666..1945529- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGTTTTAACCGTTTTCCACTCTCTGTTCGGGTGGGTTTACTTTTT
CGCTTGGTCTGCATGCTTCTGGCCGCAGGTGCTTCTAAATCATCGTCGTC
GCACGACATCGGGGCTGTCGCCCGACTTTGTTGCGCTCAACATACTAGGT
TTCGTAGCATATGCCATATTCACTTTTGCTTCTTTGTTTGACACCAAAGT
CAAACAATCATACGAAAACAACGCGGGCTATGCTCCACAAGTTGAGATCA
ACGACGCCTTTTTTGCGGCACATGGCGTGTTTATATGCTCCGTGCTCGCG
CTACAAAGCTTTACGTACCCACCACATTTACCTCCGCACCGCTATACCAC
TGTTTCGGTCATAATCACCCTAAACCTCATTATTCTTGGATTGTTTGGCT
CCATCACTGGTGCGCTTCAGTGGTACACGTATCTGCGATTTAACGGCGCC
GTCAAGGTGATTTCCAGCATTATCAAGCACATCCCTCAAGTGTACTCAAA
TTATCACCGTTCAAGCACGGTTGGATTCAGCATTACGCTGGTTATACTAG
ATGTAATCGGGAGTGTTTTCAGCCTTGCGCAACAAGCTCTGCTCTGCGTG
ATGGAGGGCAACCTCACCCCGTTCACAGGTAATCTGGCCAAGACCACGCT
CGCTGGCGAAGCGCTGTTGTTTGACATTTACTTTATAGTGCAGCATGTGT
GCTTCTATCCAGATCATACGGACGTGGACGTGCTTGGCATGAAACGACAG
GTTGAGCACACGACGATGGAGGGGCAAGTCACGGTGCATGCAGGCGGTGA
TGGCTTTGAGGACACGCGAGAGGGGCATGAATTGGAGAGACTGCTGGATG
ACACGGAGCAATGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1944666..1945529-

>Gchil9121.t1 ID=Gchil9121.t1|Name=Gchil9121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00004370_pilon:1944666..1945529- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGTTTTAACCGTTTTCCACTCTCTGTTCGGGTGGGTTTACTTTTT
CGCTTGGTCTGCATGCTTCTGGCCGCAGGTGCTTCTAAATCATCGTCGTC
GCACGACATCGGGGCTGTCGCCCGACTTTGTTGCGCTCAACATACTAGGT
TTCGTAGCATATGCCATATTCACTTTTGCTTCTTTGTTTGACACCAAAGT
CAAACAATCATACGAAAACAACGCGGGCTATGCTCCACAAGTTGAGATCA
ACGACGCCTTTTTTGCGGCACATGGCGTGTTTATATGCTCCGTGCTCGCG
CTACAAAGCTTTACGTACCCACCACATTTACCTCCGCACCGCTATACCAC
TGTTTCGGTCATAATCACCCTAAACCTCATTATTCTTGGATTGTTTGGCT
CCATCACTGGTGCGCTTCAGTGGTACACGTATCTGCGATTTAACGGCGCC
GTCAAGGTGATTTCCAGCATTATCAAGCACATCCCTCAAGTGTACTCAAA
TTATCACCGTTCAAGCACGGTTGGATTCAGCATTACGCTGGTTATACTAG
ATGTAATCGGGAGTGTTTTCAGCCTTGCGCAACAAGCTCTGCTCTGCGTG
ATGGAGGGCAACCTCACCCCGTTCACAGGTAATCTGGCCAAGACCACGCT
CGCTGGCGAAGCGCTGTTGTTTGACATTTACTTTATAGTGCAGCATGTGT
GCTTCTATCCAGATCATACGGACGTGGACGTGCTTGGCATGAAACGACAG
GTTGAGCACACGACGATGGAGGGGCAAGTCACGGTGCATGCAGGCGGTGA
TGGCTTTGAGGACACGCGAGAGGGGCATGAATTGGAGAGACTGCTGGATG
ACACGGAGCAATGA
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