Gchil9116.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9116.t1
Unique Name	Gchil9116.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1935598..1937292 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708321.1
Preferred name	EXTL2
PFAMs	Glyco_transf_64
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02367,ko:K02369,ko:K02370,ko:K04794
KEGG Reaction	R05930,R05935,R05936,R10138,R10139
KEGG Pathway	ko00534,ko01100,map00534,map01100
KEGG Module	M00059
GOs	GO:0001888,GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006040,GO:0006044,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008376,GO:0009225,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0023052,GO:0030145,GO:0030968,GO:0031984,GO:0033554,GO:0034620,GO:0034641,GO:0034976,GO:0035248,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0047237,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055086,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0097367,GO:0098827,GO:1901071,GO:1901135,GO:1901360
Evalue	1.14e-69
EggNOG OGs	COG5597@1\|root,KOG1022@1\|root,KOG1022@2759\|Eukaryota,KOG1950@2759\|Eukaryota
EC	2.4.1.223,2.4.1.224,2.4.1.225,3.1.1.29
Description	glycogenin glucosyltransferase activity
COG category	M
CAZy	GT47,GT64
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9116	Gchil9116	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1935598..1937292 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9116.t1.start1	Gchil9116.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1935598..1935600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9116.t1.CDS1	Gchil9116.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1935598..1937292 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9116.t1.exon1	Gchil9116.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1935598..1937292 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9116.t1.stop1	Gchil9116.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1937290..1937292 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9116.t1	Gchil9116.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1935598..1937292 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1935598..1937292+
coding sequence from alignment at tig00004370_pilon:1935598..1937292+

mRNA sequence

>Gchil9116.t1 ID=Gchil9116.t1|Name=Gchil9116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=565bp
MFMAPSSSLLRFQTDTPIEMASLVASLVLVNLLLIVQRATCSTVDNTQPE
SIAHPDPNAFATLLCDPETLPAVEALAHSIRLANHEEPFLIIVPSSVPDF
VIGRINDLPNTHAFEADSLPYPFNSTADRMNIHKPCRFLKLQLWGLTRWT
KILFLDADTIVRQNVAELFDAPGFSAVKDPVGMNYNTGVIVIEPSSYVYS
LIINNYVHAGSYNVGDQGALNALIDFDAWNALPMRYNTFHTAPKQSFEKA
KIVHYSGDAKPWNFWKARGHGRIPVRAFVEWCNMAENTPTAACHMRGKID
HREKDSALMKRYRDSVEDKYMSVLLSTFNRDSWRDLAVFYGELDFVKEVW
VVWQNMNKTREAAPHDKVKFVYPDSDSLNNRYLAADVSEDCVYICDDDIF
VPAHSLRSGFEVWKQNAARLVGFYPRMWYPVPGSYTVNIASGYNIVLTKG
MFAHRSFLTAYSLFLPKRLTRVVDEVMNCEDILLNMLAVGMTGLPPLAVM
SNETIRDIGKDKGISGPKGSGHLHTRDHCVQRFMRLGMDQTTLASRGSIL
PLARRNHVIGAGDD*

spliced messenger RNA

>Gchil9116.t1 ID=Gchil9116.t1|Name=Gchil9116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00004370_pilon:1935598..1937292+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATGGCTCCAAGCTCCTCCCTGCTACGCTTCCAGACTGACACCCC
CATTGAAATGGCATCACTTGTTGCCAGCCTTGTCCTTGTAAATCTCCTGC
TCATAGTCCAACGCGCCACATGCAGCACCGTCGACAACACACAGCCCGAA
TCTATCGCTCATCCCGATCCAAACGCATTCGCAACTTTATTATGCGACCC
TGAGACGCTTCCAGCCGTCGAGGCGCTCGCACACTCGATTCGACTCGCCA
ATCACGAAGAGCCGTTTCTCATCATTGTGCCGTCTTCTGTGCCGGACTTT
GTCATCGGTCGCATCAATGACTTGCCGAATACCCATGCGTTTGAGGCAGA
TTCTTTGCCGTACCCATTCAATTCTACCGCTGATCGAATGAACATACACA
AACCATGCCGCTTTCTCAAACTGCAACTGTGGGGACTCACCAGATGGACA
AAGATTCTGTTCTTGGACGCCGATACAATTGTGCGCCAAAACGTTGCGGA
ACTGTTTGATGCGCCAGGGTTCAGTGCCGTCAAGGACCCTGTCGGCATGA
ACTACAACACCGGCGTCATCGTAATTGAACCATCGTCTTATGTGTACTCG
CTAATCATCAACAACTACGTACACGCAGGGAGCTACAACGTTGGCGATCA
AGGTGCACTGAACGCTCTCATCGATTTTGACGCTTGGAATGCACTGCCAA
TGAGATACAACACGTTCCACACAGCGCCGAAGCAGTCGTTTGAGAAGGCA
AAGATTGTGCATTACTCCGGAGACGCAAAACCATGGAACTTTTGGAAGGC
AAGAGGACATGGCAGAATTCCAGTTCGTGCGTTTGTGGAATGGTGTAACA
TGGCAGAAAACACACCCACTGCAGCGTGCCACATGCGCGGTAAGATCGAC
CATCGAGAGAAAGACTCTGCTCTGATGAAACGCTACAGGGATTCTGTGGA
GGACAAGTACATGAGCGTGCTTCTTTCCACGTTCAATCGCGATTCGTGGA
GAGATTTGGCTGTGTTCTACGGGGAGCTGGACTTTGTGAAGGAAGTGTGG
GTGGTTTGGCAGAACATGAACAAGACGAGAGAGGCTGCCCCTCACGACAA
GGTAAAGTTTGTGTACCCGGACTCTGACTCGCTCAATAACCGGTATCTTG
CGGCGGATGTATCGGAAGACTGCGTGTACATATGTGACGATGACATCTTT
GTGCCGGCACACAGCCTGCGGTCCGGGTTTGAGGTGTGGAAGCAGAATGC
GGCGCGACTGGTGGGGTTTTATCCGCGCATGTGGTACCCAGTACCCGGAT
CTTACACGGTGAACATTGCCTCTGGGTATAACATCGTGCTGACAAAGGGC
ATGTTTGCTCATCGGTCGTTCTTGACGGCGTATTCGTTGTTCTTGCCGAA
ACGTCTGACGCGAGTGGTTGACGAGGTGATGAATTGTGAAGATATTCTGC
TGAATATGTTGGCGGTGGGCATGACTGGGTTGCCTCCATTGGCTGTGATG
TCGAACGAAACAATTCGTGATATCGGTAAAGATAAAGGCATTTCGGGGCC
GAAGGGCTCTGGTCATCTGCACACTCGAGACCATTGTGTGCAGAGATTTA
TGCGACTCGGGATGGACCAAACGACACTTGCCAGTCGTGGAAGCATTCTA
CCGCTGGCGAGAAGGAATCATGTGATTGGGGCGGGTGACGATTAA

protein sequence of Gchil9116.t1

>Gchil9116.t1 ID=Gchil9116.t1|Name=Gchil9116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=565bp
MFMAPSSSLLRFQTDTPIEMASLVASLVLVNLLLIVQRATCSTVDNTQPE
SIAHPDPNAFATLLCDPETLPAVEALAHSIRLANHEEPFLIIVPSSVPDF
VIGRINDLPNTHAFEADSLPYPFNSTADRMNIHKPCRFLKLQLWGLTRWT
KILFLDADTIVRQNVAELFDAPGFSAVKDPVGMNYNTGVIVIEPSSYVYS
LIINNYVHAGSYNVGDQGALNALIDFDAWNALPMRYNTFHTAPKQSFEKA
KIVHYSGDAKPWNFWKARGHGRIPVRAFVEWCNMAENTPTAACHMRGKID
HREKDSALMKRYRDSVEDKYMSVLLSTFNRDSWRDLAVFYGELDFVKEVW
VVWQNMNKTREAAPHDKVKFVYPDSDSLNNRYLAADVSEDCVYICDDDIF
VPAHSLRSGFEVWKQNAARLVGFYPRMWYPVPGSYTVNIASGYNIVLTKG
MFAHRSFLTAYSLFLPKRLTRVVDEVMNCEDILLNMLAVGMTGLPPLAVM
SNETIRDIGKDKGISGPKGSGHLHTRDHCVQRFMRLGMDQTTLASRGSIL
PLARRNHVIGAGDD*

mRNA from alignment at tig00004370_pilon:1935598..1937292+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9116.t1 ID=Gchil9116.t1|Name=Gchil9116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00004370_pilon:1935598..1937292+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCATGGCTCCAAGCTCCTCCCTGCTACGCTTCCAGACTGACACCCC
CATTGAAATGGCATCACTTGTTGCCAGCCTTGTCCTTGTAAATCTCCTGC
TCATAGTCCAACGCGCCACATGCAGCACCGTCGACAACACACAGCCCGAA
TCTATCGCTCATCCCGATCCAAACGCATTCGCAACTTTATTATGCGACCC
TGAGACGCTTCCAGCCGTCGAGGCGCTCGCACACTCGATTCGACTCGCCA
ATCACGAAGAGCCGTTTCTCATCATTGTGCCGTCTTCTGTGCCGGACTTT
GTCATCGGTCGCATCAATGACTTGCCGAATACCCATGCGTTTGAGGCAGA
TTCTTTGCCGTACCCATTCAATTCTACCGCTGATCGAATGAACATACACA
AACCATGCCGCTTTCTCAAACTGCAACTGTGGGGACTCACCAGATGGACA
AAGATTCTGTTCTTGGACGCCGATACAATTGTGCGCCAAAACGTTGCGGA
ACTGTTTGATGCGCCAGGGTTCAGTGCCGTCAAGGACCCTGTCGGCATGA
ACTACAACACCGGCGTCATCGTAATTGAACCATCGTCTTATGTGTACTCG
CTAATCATCAACAACTACGTACACGCAGGGAGCTACAACGTTGGCGATCA
AGGTGCACTGAACGCTCTCATCGATTTTGACGCTTGGAATGCACTGCCAA
TGAGATACAACACGTTCCACACAGCGCCGAAGCAGTCGTTTGAGAAGGCA
AAGATTGTGCATTACTCCGGAGACGCAAAACCATGGAACTTTTGGAAGGC
AAGAGGACATGGCAGAATTCCAGTTCGTGCGTTTGTGGAATGGTGTAACA
TGGCAGAAAACACACCCACTGCAGCGTGCCACATGCGCGGTAAGATCGAC
CATCGAGAGAAAGACTCTGCTCTGATGAAACGCTACAGGGATTCTGTGGA
GGACAAGTACATGAGCGTGCTTCTTTCCACGTTCAATCGCGATTCGTGGA
GAGATTTGGCTGTGTTCTACGGGGAGCTGGACTTTGTGAAGGAAGTGTGG
GTGGTTTGGCAGAACATGAACAAGACGAGAGAGGCTGCCCCTCACGACAA
GGTAAAGTTTGTGTACCCGGACTCTGACTCGCTCAATAACCGGTATCTTG
CGGCGGATGTATCGGAAGACTGCGTGTACATATGTGACGATGACATCTTT
GTGCCGGCACACAGCCTGCGGTCCGGGTTTGAGGTGTGGAAGCAGAATGC
GGCGCGACTGGTGGGGTTTTATCCGCGCATGTGGTACCCAGTACCCGGAT
CTTACACGGTGAACATTGCCTCTGGGTATAACATCGTGCTGACAAAGGGC
ATGTTTGCTCATCGGTCGTTCTTGACGGCGTATTCGTTGTTCTTGCCGAA
ACGTCTGACGCGAGTGGTTGACGAGGTGATGAATTGTGAAGATATTCTGC
TGAATATGTTGGCGGTGGGCATGACTGGGTTGCCTCCATTGGCTGTGATG
TCGAACGAAACAATTCGTGATATCGGTAAAGATAAAGGCATTTCGGGGCC
GAAGGGCTCTGGTCATCTGCACACTCGAGACCATTGTGTGCAGAGATTTA
TGCGACTCGGGATGGACCAAACGACACTTGCCAGTCGTGGAAGCATTCTA
CCGCTGGCGAGAAGGAATCATGTGATTGGGGCGGGTGACGATTAA

Coding sequence (CDS) from alignment at tig00004370_pilon:1935598..1937292+

>Gchil9116.t1 ID=Gchil9116.t1|Name=Gchil9116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00004370_pilon:1935598..1937292+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCATGGCTCCAAGCTCCTCCCTGCTACGCTTCCAGACTGACACCCC
CATTGAAATGGCATCACTTGTTGCCAGCCTTGTCCTTGTAAATCTCCTGC
TCATAGTCCAACGCGCCACATGCAGCACCGTCGACAACACACAGCCCGAA
TCTATCGCTCATCCCGATCCAAACGCATTCGCAACTTTATTATGCGACCC
TGAGACGCTTCCAGCCGTCGAGGCGCTCGCACACTCGATTCGACTCGCCA
ATCACGAAGAGCCGTTTCTCATCATTGTGCCGTCTTCTGTGCCGGACTTT
GTCATCGGTCGCATCAATGACTTGCCGAATACCCATGCGTTTGAGGCAGA
TTCTTTGCCGTACCCATTCAATTCTACCGCTGATCGAATGAACATACACA
AACCATGCCGCTTTCTCAAACTGCAACTGTGGGGACTCACCAGATGGACA
AAGATTCTGTTCTTGGACGCCGATACAATTGTGCGCCAAAACGTTGCGGA
ACTGTTTGATGCGCCAGGGTTCAGTGCCGTCAAGGACCCTGTCGGCATGA
ACTACAACACCGGCGTCATCGTAATTGAACCATCGTCTTATGTGTACTCG
CTAATCATCAACAACTACGTACACGCAGGGAGCTACAACGTTGGCGATCA
AGGTGCACTGAACGCTCTCATCGATTTTGACGCTTGGAATGCACTGCCAA
TGAGATACAACACGTTCCACACAGCGCCGAAGCAGTCGTTTGAGAAGGCA
AAGATTGTGCATTACTCCGGAGACGCAAAACCATGGAACTTTTGGAAGGC
AAGAGGACATGGCAGAATTCCAGTTCGTGCGTTTGTGGAATGGTGTAACA
TGGCAGAAAACACACCCACTGCAGCGTGCCACATGCGCGGTAAGATCGAC
CATCGAGAGAAAGACTCTGCTCTGATGAAACGCTACAGGGATTCTGTGGA
GGACAAGTACATGAGCGTGCTTCTTTCCACGTTCAATCGCGATTCGTGGA
GAGATTTGGCTGTGTTCTACGGGGAGCTGGACTTTGTGAAGGAAGTGTGG
GTGGTTTGGCAGAACATGAACAAGACGAGAGAGGCTGCCCCTCACGACAA
GGTAAAGTTTGTGTACCCGGACTCTGACTCGCTCAATAACCGGTATCTTG
CGGCGGATGTATCGGAAGACTGCGTGTACATATGTGACGATGACATCTTT
GTGCCGGCACACAGCCTGCGGTCCGGGTTTGAGGTGTGGAAGCAGAATGC
GGCGCGACTGGTGGGGTTTTATCCGCGCATGTGGTACCCAGTACCCGGAT
CTTACACGGTGAACATTGCCTCTGGGTATAACATCGTGCTGACAAAGGGC
ATGTTTGCTCATCGGTCGTTCTTGACGGCGTATTCGTTGTTCTTGCCGAA
ACGTCTGACGCGAGTGGTTGACGAGGTGATGAATTGTGAAGATATTCTGC
TGAATATGTTGGCGGTGGGCATGACTGGGTTGCCTCCATTGGCTGTGATG
TCGAACGAAACAATTCGTGATATCGGTAAAGATAAAGGCATTTCGGGGCC
GAAGGGCTCTGGTCATCTGCACACTCGAGACCATTGTGTGCAGAGATTTA
TGCGACTCGGGATGGACCAAACGACACTTGCCAGTCGTGGAAGCATTCTA
CCGCTGGCGAGAAGGAATCATGTGATTGGGGCGGGTGACGATTAA