Gchil9115.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9115.t1
Unique NameGchil9115.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1931629..1933245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog106582.XP_004573818.1
PFAMsTrypsin
Max annot lvl33208|Metazoa
KEGG koko:K08664,ko:K09628
Evalue8.22e-35
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,39U11@33154|Opisthokonta,3BDTB@33208|Metazoa,3D0T5@33213|Bilateria,482CU@7711|Chordata,48ZVH@7742|Vertebrata,49QD9@7898|Actinopterygii
DescriptionTransmembrane protease serine 9-like
COG categoryE
BRITEko00000,ko00537,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9115Gchil9115Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1931629..1933245 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9115.t1.stop1Gchil9115.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1931629..1931631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9115.t1.CDS1Gchil9115.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1931629..1933245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9115.t1.exon1Gchil9115.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1931629..1933245 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9115.t1.start1Gchil9115.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1933243..1933245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9115.t1Gchil9115.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1931629..1933245 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9115.t1 ID=Gchil9115.t1|Name=Gchil9115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=539bp
MPFSTKQSQSCKWYGFHIVILLLILNANGSDAEKTTQAGPPSKTGVEMCP
KVLPIFSGELQSKSRRGPDRIVNGDRAPHMKLYMAALVSEGFGFFCSASL
LSKYWAVTAAHCEIDPRRVFLRVGGSSILDGIDFEIEKAIPHPRYLRNDR
GTEENDVQLIKLKKPVPRHLKFFYINRDPSYPATSSFARTCGYGDTYGTS
TPNSGVLREVDVPIQVASLCQDQYEDLNVNIEDTAHICAGYERGGCDSCY
GDSGGPLFTVGKNLVLVQVGIVSFGYECAAPLRPGVYTRISSYISWMSES
GAVFETTSDGINIFGHNEPPTKTPADEPEKSYHEEPESNAENEVEHESDF
IPPSAEINSAFGVVDSNLTIEPRSACFPANAVVALENGGDRLMMDLQVGD
RVRVGPQEFSEVFMFTHKRRTGVFKFVRIECRMCKKPLLLSLDHVLSING
VLRPAHEVRVGDSIVKASRQLAEVTHVSHVREKGLYNPQTMDGRIIVNDI
LVTTYTTAIDKQTAHALLTPLRFCFRNFNWLLNSRALN*
back to top

spliced messenger RNA

>Gchil9115.t1 ID=Gchil9115.t1|Name=Gchil9115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00004370_pilon:1931629..1933245- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTTTCGACCAAACAATCCCAGTCCTGTAAATGGTACGGCTTTCA
TATCGTCATTCTGCTTCTAATTTTGAATGCCAACGGTTCGGATGCTGAAA
AGACCACACAAGCAGGACCTCCTTCGAAGACTGGTGTTGAGATGTGCCCG
AAGGTGCTTCCAATTTTCTCCGGAGAATTGCAGTCAAAATCAAGAAGAGG
TCCTGATAGAATCGTTAACGGTGATCGTGCTCCGCACATGAAGCTATACA
TGGCAGCTCTGGTGTCAGAAGGGTTCGGATTTTTCTGTTCAGCTTCCTTG
CTCTCGAAATACTGGGCTGTAACGGCTGCGCATTGCGAAATTGACCCCCG
ACGAGTCTTTCTAAGAGTTGGCGGCTCGTCCATTCTAGACGGAATTGACT
TCGAAATCGAAAAAGCTATTCCGCACCCCAGGTACTTACGTAATGACCGA
GGTACAGAGGAAAACGACGTGCAGCTGATCAAGTTAAAGAAACCTGTCCC
GAGGCACTTGAAGTTCTTTTACATCAATCGAGACCCTTCTTATCCCGCAA
CTTCTTCCTTCGCTCGAACCTGTGGATACGGAGACACCTATGGAACTTCC
ACTCCCAACAGTGGGGTGCTACGTGAAGTTGATGTACCGATTCAGGTTGC
TTCACTGTGTCAGGATCAGTATGAAGACCTTAACGTCAACATCGAGGATA
CGGCACATATATGCGCTGGCTACGAAAGGGGTGGATGTGACTCATGTTAT
GGTGATAGCGGGGGCCCATTGTTCACAGTAGGAAAAAATTTGGTTTTGGT
TCAAGTGGGCATTGTATCGTTTGGGTACGAATGTGCTGCTCCTCTCAGAC
CAGGCGTATATACAAGAATATCCTCCTATATATCGTGGATGTCCGAATCT
GGGGCTGTTTTTGAGACCACATCCGATGGTATTAACATATTCGGACATAA
CGAGCCCCCCACTAAAACCCCCGCTGATGAGCCTGAAAAGAGTTACCATG
AAGAACCTGAGTCAAACGCTGAGAACGAAGTTGAACATGAATCGGACTTC
ATACCACCAAGCGCGGAGATAAACTCTGCGTTCGGAGTTGTAGATAGCAA
TCTAACTATAGAACCAAGGTCGGCTTGTTTCCCTGCAAACGCCGTCGTTG
CGCTTGAAAATGGCGGGGACAGGTTAATGATGGATTTGCAAGTTGGAGAC
CGAGTAAGAGTCGGTCCTCAAGAGTTCTCTGAAGTCTTCATGTTTACACA
CAAACGCCGCACTGGGGTCTTCAAGTTCGTTCGAATCGAATGTCGAATGT
GTAAGAAGCCGTTGCTACTGTCTCTAGATCACGTGCTGTCAATTAACGGG
GTGCTGAGACCTGCTCATGAAGTACGGGTTGGTGACTCAATTGTCAAAGC
TTCTCGGCAGCTCGCAGAAGTAACTCATGTTTCACATGTGCGCGAAAAAG
GCCTTTATAACCCGCAGACTATGGACGGGAGAATCATTGTGAACGATATT
TTGGTGACTACCTATACCACAGCAATTGATAAACAAACAGCTCATGCTCT
CTTGACTCCATTGAGATTCTGTTTTAGGAATTTCAATTGGTTGCTAAACT
CAAGGGCATTGAACTAA
back to top

protein sequence of Gchil9115.t1

>Gchil9115.t1 ID=Gchil9115.t1|Name=Gchil9115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=539bp
MPFSTKQSQSCKWYGFHIVILLLILNANGSDAEKTTQAGPPSKTGVEMCP
KVLPIFSGELQSKSRRGPDRIVNGDRAPHMKLYMAALVSEGFGFFCSASL
LSKYWAVTAAHCEIDPRRVFLRVGGSSILDGIDFEIEKAIPHPRYLRNDR
GTEENDVQLIKLKKPVPRHLKFFYINRDPSYPATSSFARTCGYGDTYGTS
TPNSGVLREVDVPIQVASLCQDQYEDLNVNIEDTAHICAGYERGGCDSCY
GDSGGPLFTVGKNLVLVQVGIVSFGYECAAPLRPGVYTRISSYISWMSES
GAVFETTSDGINIFGHNEPPTKTPADEPEKSYHEEPESNAENEVEHESDF
IPPSAEINSAFGVVDSNLTIEPRSACFPANAVVALENGGDRLMMDLQVGD
RVRVGPQEFSEVFMFTHKRRTGVFKFVRIECRMCKKPLLLSLDHVLSING
VLRPAHEVRVGDSIVKASRQLAEVTHVSHVREKGLYNPQTMDGRIIVNDI
LVTTYTTAIDKQTAHALLTPLRFCFRNFNWLLNSRALN*
back to top

mRNA from alignment at tig00004370_pilon:1931629..1933245-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9115.t1 ID=Gchil9115.t1|Name=Gchil9115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00004370_pilon:1931629..1933245- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCTTTTCGACCAAACAATCCCAGTCCTGTAAATGGTACGGCTTTCA
TATCGTCATTCTGCTTCTAATTTTGAATGCCAACGGTTCGGATGCTGAAA
AGACCACACAAGCAGGACCTCCTTCGAAGACTGGTGTTGAGATGTGCCCG
AAGGTGCTTCCAATTTTCTCCGGAGAATTGCAGTCAAAATCAAGAAGAGG
TCCTGATAGAATCGTTAACGGTGATCGTGCTCCGCACATGAAGCTATACA
TGGCAGCTCTGGTGTCAGAAGGGTTCGGATTTTTCTGTTCAGCTTCCTTG
CTCTCGAAATACTGGGCTGTAACGGCTGCGCATTGCGAAATTGACCCCCG
ACGAGTCTTTCTAAGAGTTGGCGGCTCGTCCATTCTAGACGGAATTGACT
TCGAAATCGAAAAAGCTATTCCGCACCCCAGGTACTTACGTAATGACCGA
GGTACAGAGGAAAACGACGTGCAGCTGATCAAGTTAAAGAAACCTGTCCC
GAGGCACTTGAAGTTCTTTTACATCAATCGAGACCCTTCTTATCCCGCAA
CTTCTTCCTTCGCTCGAACCTGTGGATACGGAGACACCTATGGAACTTCC
ACTCCCAACAGTGGGGTGCTACGTGAAGTTGATGTACCGATTCAGGTTGC
TTCACTGTGTCAGGATCAGTATGAAGACCTTAACGTCAACATCGAGGATA
CGGCACATATATGCGCTGGCTACGAAAGGGGTGGATGTGACTCATGTTAT
GGTGATAGCGGGGGCCCATTGTTCACAGTAGGAAAAAATTTGGTTTTGGT
TCAAGTGGGCATTGTATCGTTTGGGTACGAATGTGCTGCTCCTCTCAGAC
CAGGCGTATATACAAGAATATCCTCCTATATATCGTGGATGTCCGAATCT
GGGGCTGTTTTTGAGACCACATCCGATGGTATTAACATATTCGGACATAA
CGAGCCCCCCACTAAAACCCCCGCTGATGAGCCTGAAAAGAGTTACCATG
AAGAACCTGAGTCAAACGCTGAGAACGAAGTTGAACATGAATCGGACTTC
ATACCACCAAGCGCGGAGATAAACTCTGCGTTCGGAGTTGTAGATAGCAA
TCTAACTATAGAACCAAGGTCGGCTTGTTTCCCTGCAAACGCCGTCGTTG
CGCTTGAAAATGGCGGGGACAGGTTAATGATGGATTTGCAAGTTGGAGAC
CGAGTAAGAGTCGGTCCTCAAGAGTTCTCTGAAGTCTTCATGTTTACACA
CAAACGCCGCACTGGGGTCTTCAAGTTCGTTCGAATCGAATGTCGAATGT
GTAAGAAGCCGTTGCTACTGTCTCTAGATCACGTGCTGTCAATTAACGGG
GTGCTGAGACCTGCTCATGAAGTACGGGTTGGTGACTCAATTGTCAAAGC
TTCTCGGCAGCTCGCAGAAGTAACTCATGTTTCACATGTGCGCGAAAAAG
GCCTTTATAACCCGCAGACTATGGACGGGAGAATCATTGTGAACGATATT
TTGGTGACTACCTATACCACAGCAATTGATAAACAAACAGCTCATGCTCT
CTTGACTCCATTGAGATTCTGTTTTAGGAATTTCAATTGGTTGCTAAACT
CAAGGGCATTGAACTAA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:1931629..1933245-

>Gchil9115.t1 ID=Gchil9115.t1|Name=Gchil9115.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00004370_pilon:1931629..1933245- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCTTTTCGACCAAACAATCCCAGTCCTGTAAATGGTACGGCTTTCA
TATCGTCATTCTGCTTCTAATTTTGAATGCCAACGGTTCGGATGCTGAAA
AGACCACACAAGCAGGACCTCCTTCGAAGACTGGTGTTGAGATGTGCCCG
AAGGTGCTTCCAATTTTCTCCGGAGAATTGCAGTCAAAATCAAGAAGAGG
TCCTGATAGAATCGTTAACGGTGATCGTGCTCCGCACATGAAGCTATACA
TGGCAGCTCTGGTGTCAGAAGGGTTCGGATTTTTCTGTTCAGCTTCCTTG
CTCTCGAAATACTGGGCTGTAACGGCTGCGCATTGCGAAATTGACCCCCG
ACGAGTCTTTCTAAGAGTTGGCGGCTCGTCCATTCTAGACGGAATTGACT
TCGAAATCGAAAAAGCTATTCCGCACCCCAGGTACTTACGTAATGACCGA
GGTACAGAGGAAAACGACGTGCAGCTGATCAAGTTAAAGAAACCTGTCCC
GAGGCACTTGAAGTTCTTTTACATCAATCGAGACCCTTCTTATCCCGCAA
CTTCTTCCTTCGCTCGAACCTGTGGATACGGAGACACCTATGGAACTTCC
ACTCCCAACAGTGGGGTGCTACGTGAAGTTGATGTACCGATTCAGGTTGC
TTCACTGTGTCAGGATCAGTATGAAGACCTTAACGTCAACATCGAGGATA
CGGCACATATATGCGCTGGCTACGAAAGGGGTGGATGTGACTCATGTTAT
GGTGATAGCGGGGGCCCATTGTTCACAGTAGGAAAAAATTTGGTTTTGGT
TCAAGTGGGCATTGTATCGTTTGGGTACGAATGTGCTGCTCCTCTCAGAC
CAGGCGTATATACAAGAATATCCTCCTATATATCGTGGATGTCCGAATCT
GGGGCTGTTTTTGAGACCACATCCGATGGTATTAACATATTCGGACATAA
CGAGCCCCCCACTAAAACCCCCGCTGATGAGCCTGAAAAGAGTTACCATG
AAGAACCTGAGTCAAACGCTGAGAACGAAGTTGAACATGAATCGGACTTC
ATACCACCAAGCGCGGAGATAAACTCTGCGTTCGGAGTTGTAGATAGCAA
TCTAACTATAGAACCAAGGTCGGCTTGTTTCCCTGCAAACGCCGTCGTTG
CGCTTGAAAATGGCGGGGACAGGTTAATGATGGATTTGCAAGTTGGAGAC
CGAGTAAGAGTCGGTCCTCAAGAGTTCTCTGAAGTCTTCATGTTTACACA
CAAACGCCGCACTGGGGTCTTCAAGTTCGTTCGAATCGAATGTCGAATGT
GTAAGAAGCCGTTGCTACTGTCTCTAGATCACGTGCTGTCAATTAACGGG
GTGCTGAGACCTGCTCATGAAGTACGGGTTGGTGACTCAATTGTCAAAGC
TTCTCGGCAGCTCGCAGAAGTAACTCATGTTTCACATGTGCGCGAAAAAG
GCCTTTATAACCCGCAGACTATGGACGGGAGAATCATTGTGAACGATATT
TTGGTGACTACCTATACCACAGCAATTGATAAACAAACAGCTCATGCTCT
CTTGACTCCATTGAGATTCTGTTTTAGGAATTTCAATTGGTTGCTAAACT
CAAGGGCATTGAACTAA
back to top