Gchil9114.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9114.t1
Unique NameGchil9114.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1930263..1931396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10006739
PFAMsInositol_P
Max annot lvl35493|Streptophyta
KEGG rclassRC00078
KEGG koko:K01082
KEGG ReactionR00188,R00508
KEGG Pathwayko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue5.17e-18
EggNOG OGsCOG1218@1|root,KOG1528@2759|Eukaryota,37T74@33090|Viridiplantae,3GD4D@35493|Streptophyta,4JF87@91835|fabids
EC3.1.3.7
DescriptionPAP-specific phosphatase
COG categoryFP
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9114Gchil9114Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1930263..1931396 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9114.t1.stop1Gchil9114.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1930263..1930265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9114.t1.CDS1Gchil9114.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1930263..1931396 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9114.t1.exon1Gchil9114.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1930263..1931396 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9114.t1.start1Gchil9114.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1931394..1931396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9114.t1Gchil9114.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1930263..1931396 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9114.t1 ID=Gchil9114.t1|Name=Gchil9114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=378bp
MTTAPEVPNWNEYCQAWVSSLTIRGPLRLLEFKRSRALLQRSKDDHGKNN
KGYVASRLYPLSKERSFCLAAAKHVRAIYGKVPQLQAYMKSDQSPVTAVD
VAIQGTLFRKLSEAFSDDMLIAEEDIAELITDDTFLDAVDQLVDFKLGNL
SLDRSQKKGTRWWTLDPIDGTKGLLSGGDFAVGLALHHTKNRVGYPVLGS
LMLPRQGVLLLANVLASKLEIIPLDSLGLASSSQVLLDRSCAKSEQDTTA
SPHNQGTKDWHFSGGNDFSLEGQGPWKPLCCGSLVKYAAVAQGKAFALVQ
TLSHGFANSWDHAAGIAAVWASGGAVTDEYGNDFAVGSDEDPRVVRLQQG
SKAIVASARGRDHLNLCSKVRYSLQHL*
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spliced messenger RNA

>Gchil9114.t1 ID=Gchil9114.t1|Name=Gchil9114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004370_pilon:1930263..1931396- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCGCACCAGAAGTCCCCAATTGGAATGAATATTGCCAGGCGTG
GGTTTCAAGCTTAACGATAAGGGGTCCTTTGCGCTTACTAGAGTTTAAAC
GTTCGCGTGCGTTATTACAACGTTCGAAGGATGATCATGGGAAGAACAAC
AAAGGATACGTAGCATCAAGGTTGTACCCTTTGAGCAAGGAGCGGTCTTT
CTGTCTTGCGGCCGCAAAACATGTTAGAGCCATTTATGGCAAAGTGCCAC
AGCTTCAAGCTTACATGAAAAGCGATCAGTCCCCCGTGACTGCAGTCGAC
GTTGCTATTCAAGGGACACTGTTCAGAAAGTTATCAGAAGCCTTTTCAGA
TGATATGCTTATTGCCGAGGAAGACATAGCTGAATTAATCACTGACGACA
CTTTTCTCGACGCCGTGGACCAGTTAGTTGACTTTAAACTGGGAAATCTA
TCTTTGGATAGATCTCAAAAGAAAGGAACAAGATGGTGGACCTTGGATCC
CATTGACGGCACAAAAGGACTCTTATCGGGAGGTGATTTCGCGGTAGGCT
TGGCATTACATCATACAAAGAACCGTGTTGGCTATCCGGTTCTGGGAAGC
CTGATGTTACCAAGACAGGGAGTATTGCTTCTTGCCAACGTGCTCGCCTC
AAAACTTGAAATAATTCCTTTGGATAGCCTAGGACTAGCCAGTTCCTCAC
AAGTTCTCCTTGATAGGAGCTGTGCAAAATCTGAACAAGACACGACTGCC
AGCCCTCACAACCAGGGGACAAAAGATTGGCACTTTTCCGGCGGAAACGA
TTTCTCACTTGAAGGACAGGGTCCATGGAAACCATTATGCTGCGGTAGTC
TTGTCAAGTATGCAGCTGTAGCCCAAGGTAAGGCGTTTGCGCTCGTCCAG
ACTTTGTCACACGGTTTCGCCAATAGTTGGGATCACGCCGCGGGAATAGC
TGCGGTCTGGGCCTCAGGAGGTGCAGTAACAGATGAATATGGAAACGATT
TTGCGGTAGGCAGCGACGAAGATCCCCGTGTTGTGCGGCTGCAGCAAGGT
TCAAAAGCCATTGTGGCATCAGCTCGAGGGAGAGATCATCTCAATTTGTG
TTCTAAAGTGAGATATTCTCTGCAGCACCTGTAA
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protein sequence of Gchil9114.t1

>Gchil9114.t1 ID=Gchil9114.t1|Name=Gchil9114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=378bp
MTTAPEVPNWNEYCQAWVSSLTIRGPLRLLEFKRSRALLQRSKDDHGKNN
KGYVASRLYPLSKERSFCLAAAKHVRAIYGKVPQLQAYMKSDQSPVTAVD
VAIQGTLFRKLSEAFSDDMLIAEEDIAELITDDTFLDAVDQLVDFKLGNL
SLDRSQKKGTRWWTLDPIDGTKGLLSGGDFAVGLALHHTKNRVGYPVLGS
LMLPRQGVLLLANVLASKLEIIPLDSLGLASSSQVLLDRSCAKSEQDTTA
SPHNQGTKDWHFSGGNDFSLEGQGPWKPLCCGSLVKYAAVAQGKAFALVQ
TLSHGFANSWDHAAGIAAVWASGGAVTDEYGNDFAVGSDEDPRVVRLQQG
SKAIVASARGRDHLNLCSKVRYSLQHL*
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mRNA from alignment at tig00004370_pilon:1930263..1931396-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9114.t1 ID=Gchil9114.t1|Name=Gchil9114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004370_pilon:1930263..1931396- (Gracilaria chilensis NLEC103_M9 male)
ATGACCACCGCACCAGAAGTCCCCAATTGGAATGAATATTGCCAGGCGTG
GGTTTCAAGCTTAACGATAAGGGGTCCTTTGCGCTTACTAGAGTTTAAAC
GTTCGCGTGCGTTATTACAACGTTCGAAGGATGATCATGGGAAGAACAAC
AAAGGATACGTAGCATCAAGGTTGTACCCTTTGAGCAAGGAGCGGTCTTT
CTGTCTTGCGGCCGCAAAACATGTTAGAGCCATTTATGGCAAAGTGCCAC
AGCTTCAAGCTTACATGAAAAGCGATCAGTCCCCCGTGACTGCAGTCGAC
GTTGCTATTCAAGGGACACTGTTCAGAAAGTTATCAGAAGCCTTTTCAGA
TGATATGCTTATTGCCGAGGAAGACATAGCTGAATTAATCACTGACGACA
CTTTTCTCGACGCCGTGGACCAGTTAGTTGACTTTAAACTGGGAAATCTA
TCTTTGGATAGATCTCAAAAGAAAGGAACAAGATGGTGGACCTTGGATCC
CATTGACGGCACAAAAGGACTCTTATCGGGAGGTGATTTCGCGGTAGGCT
TGGCATTACATCATACAAAGAACCGTGTTGGCTATCCGGTTCTGGGAAGC
CTGATGTTACCAAGACAGGGAGTATTGCTTCTTGCCAACGTGCTCGCCTC
AAAACTTGAAATAATTCCTTTGGATAGCCTAGGACTAGCCAGTTCCTCAC
AAGTTCTCCTTGATAGGAGCTGTGCAAAATCTGAACAAGACACGACTGCC
AGCCCTCACAACCAGGGGACAAAAGATTGGCACTTTTCCGGCGGAAACGA
TTTCTCACTTGAAGGACAGGGTCCATGGAAACCATTATGCTGCGGTAGTC
TTGTCAAGTATGCAGCTGTAGCCCAAGGTAAGGCGTTTGCGCTCGTCCAG
ACTTTGTCACACGGTTTCGCCAATAGTTGGGATCACGCCGCGGGAATAGC
TGCGGTCTGGGCCTCAGGAGGTGCAGTAACAGATGAATATGGAAACGATT
TTGCGGTAGGCAGCGACGAAGATCCCCGTGTTGTGCGGCTGCAGCAAGGT
TCAAAAGCCATTGTGGCATCAGCTCGAGGGAGAGATCATCTCAATTTGTG
TTCTAAAGTGAGATATTCTCTGCAGCACCTGTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1930263..1931396-

>Gchil9114.t1 ID=Gchil9114.t1|Name=Gchil9114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00004370_pilon:1930263..1931396- (Gracilaria chilensis NLEC103_M9 male)
ATGACCACCGCACCAGAAGTCCCCAATTGGAATGAATATTGCCAGGCGTG
GGTTTCAAGCTTAACGATAAGGGGTCCTTTGCGCTTACTAGAGTTTAAAC
GTTCGCGTGCGTTATTACAACGTTCGAAGGATGATCATGGGAAGAACAAC
AAAGGATACGTAGCATCAAGGTTGTACCCTTTGAGCAAGGAGCGGTCTTT
CTGTCTTGCGGCCGCAAAACATGTTAGAGCCATTTATGGCAAAGTGCCAC
AGCTTCAAGCTTACATGAAAAGCGATCAGTCCCCCGTGACTGCAGTCGAC
GTTGCTATTCAAGGGACACTGTTCAGAAAGTTATCAGAAGCCTTTTCAGA
TGATATGCTTATTGCCGAGGAAGACATAGCTGAATTAATCACTGACGACA
CTTTTCTCGACGCCGTGGACCAGTTAGTTGACTTTAAACTGGGAAATCTA
TCTTTGGATAGATCTCAAAAGAAAGGAACAAGATGGTGGACCTTGGATCC
CATTGACGGCACAAAAGGACTCTTATCGGGAGGTGATTTCGCGGTAGGCT
TGGCATTACATCATACAAAGAACCGTGTTGGCTATCCGGTTCTGGGAAGC
CTGATGTTACCAAGACAGGGAGTATTGCTTCTTGCCAACGTGCTCGCCTC
AAAACTTGAAATAATTCCTTTGGATAGCCTAGGACTAGCCAGTTCCTCAC
AAGTTCTCCTTGATAGGAGCTGTGCAAAATCTGAACAAGACACGACTGCC
AGCCCTCACAACCAGGGGACAAAAGATTGGCACTTTTCCGGCGGAAACGA
TTTCTCACTTGAAGGACAGGGTCCATGGAAACCATTATGCTGCGGTAGTC
TTGTCAAGTATGCAGCTGTAGCCCAAGGTAAGGCGTTTGCGCTCGTCCAG
ACTTTGTCACACGGTTTCGCCAATAGTTGGGATCACGCCGCGGGAATAGC
TGCGGTCTGGGCCTCAGGAGGTGCAGTAACAGATGAATATGGAAACGATT
TTGCGGTAGGCAGCGACGAAGATCCCCGTGTTGTGCGGCTGCAGCAAGGT
TCAAAAGCCATTGTGGCATCAGCTCGAGGGAGAGATCATCTCAATTTGTG
TTCTAAAGTGAGATATTCTCTGCAGCACCTGTAA
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