Gchil9113.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9113.t1
Unique NameGchil9113.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1928192..1929754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN16275
PFAMsRft-1
Max annot lvl35493|Streptophyta
KEGG koko:K06316
KEGG TC2.A.66.3
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006869,GO:0008150,GO:0009987,GO:0010876,GO:0012505,GO:0016020,GO:0016043,GO:0031984,GO:0033036,GO:0034203,GO:0034204,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071840,GO:0097035,GO:0098827,GO:1901264
Evalue6.93e-26
EggNOG OGsKOG2864@1|root,KOG2864@2759|Eukaryota,37RCQ@33090|Viridiplantae,3G9BI@35493|Streptophyta
DescriptionProtein RFT1 homolog
COG categoryD
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9113Gchil9113Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1928192..1929754 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9113.t1.start1Gchil9113.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1928192..1928194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9113.t1.CDS1Gchil9113.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1928192..1929754 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9113.t1.exon1Gchil9113.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1928192..1929754 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9113.t1.stop1Gchil9113.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1929752..1929754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9113.t1Gchil9113.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1928192..1929754 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9113.t1 ID=Gchil9113.t1|Name=Gchil9113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=521bp
MSDTRDVARAAANGVQSHLVYQVSARVLSFLIKALVVRALKPAHFAFVEI
RLYLFVGLTLLPTISGFRPVALRVPSDRACAALCYVCSLLTVALALVFGT
AMMYVQPEHWRASLVVTASLIARAFAEPPLIFARRRQRYSQSSRARAVAT
VISAFSQTLAISMLTSSKYASTAGALGHLTYSLTLAITMFFACGPQRVPL
LSPSAFRAALSYDHLVMAFVSTAEGAIKYLLENGEGIILDLTCPALAKAA
YKLVANLGSVMARFFSEALEEQSFNVFHRLAPAFRKKGNENDAHTRNACL
DTLFIAHKSALIVSFLFATVGPCYSYPLLRFLYGQKYADHTRAPYLLNLY
FVYLVFMAANGVTEAFVSASATTSELKSRTKFSTCLSVMYMIAMWYAATA
YEAAGIIVVNCANMAIRTCYSTWFFSKLTSRSPFTFLNSRPSVAVLSMLL
VARHISQLSEARFFGPAEARIPVDNVYDLMTRLLQHSLSGFLAVGLFVIS
VLVFEPKFISMIRSFRSHQD*
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spliced messenger RNA

>Gchil9113.t1 ID=Gchil9113.t1|Name=Gchil9113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004370_pilon:1928192..1929754+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGACACCAGAGATGTCGCGCGCGCCGCCGCAAACGGCGTGCAGTC
CCACCTCGTCTACCAAGTGAGCGCGCGTGTGCTCTCGTTTCTCATCAAGG
CGCTCGTTGTGCGCGCCCTAAAGCCCGCCCACTTCGCCTTTGTCGAGATT
CGTCTCTACCTTTTCGTCGGTCTCACCCTTCTTCCAACCATCAGTGGCTT
CCGCCCTGTCGCCCTGCGCGTCCCCTCTGACCGTGCTTGCGCCGCCCTGT
GTTATGTGTGCTCGCTGCTCACCGTGGCGCTTGCCCTCGTGTTTGGCACC
GCCATGATGTACGTGCAGCCGGAGCATTGGCGCGCCAGTCTCGTCGTTAC
TGCCAGTCTCATTGCGCGTGCCTTTGCAGAGCCTCCGCTTATTTTCGCCC
GCCGCCGACAGCGTTACTCCCAGTCTTCTCGCGCTCGCGCCGTCGCAACC
GTCATCAGCGCCTTCAGCCAGACACTCGCCATCAGCATGCTTACCAGCTC
AAAGTACGCGTCAACCGCGGGCGCCCTTGGTCACCTCACCTACTCGCTCA
CTTTGGCTATCACCATGTTTTTCGCATGCGGCCCGCAACGCGTCCCGCTT
CTTTCGCCATCCGCCTTTCGCGCTGCCTTAAGCTATGACCACCTTGTCAT
GGCCTTTGTCTCCACGGCTGAAGGCGCCATCAAATATCTTCTCGAGAACG
GCGAGGGCATAATTCTCGACCTCACTTGCCCCGCTCTTGCCAAAGCCGCC
TACAAGCTCGTCGCCAATTTGGGCAGCGTCATGGCCAGGTTTTTCAGCGA
GGCTTTGGAGGAACAGTCTTTCAACGTATTTCACCGACTCGCCCCGGCCT
TTCGGAAAAAGGGAAACGAAAACGATGCTCACACCCGCAACGCCTGTCTG
GACACCCTCTTCATTGCCCACAAATCCGCACTGATTGTTTCTTTTCTCTT
TGCCACAGTAGGGCCGTGCTACTCCTACCCGTTATTGCGCTTTTTGTACG
GACAAAAGTATGCAGATCATACCCGCGCCCCCTACTTGCTCAATCTCTAC
TTTGTCTACTTGGTCTTCATGGCAGCCAATGGAGTCACGGAGGCTTTTGT
GTCAGCGTCGGCTACCACGTCCGAACTCAAGTCGCGCACAAAGTTCAGTA
CCTGTCTCAGTGTCATGTACATGATTGCCATGTGGTATGCAGCCACTGCC
TATGAAGCCGCTGGAATAATTGTAGTTAACTGCGCCAACATGGCCATACG
CACATGCTATTCGACGTGGTTCTTTAGTAAGCTAACTTCACGATCGCCTT
TCACCTTCCTCAACTCCAGGCCCAGTGTAGCCGTGTTGTCTATGCTCCTT
GTCGCACGGCACATATCACAGCTCAGTGAGGCTCGCTTCTTTGGCCCGGC
CGAAGCAAGAATACCAGTTGACAACGTGTATGACCTCATGACTCGGCTTC
TTCAACACTCTCTCAGCGGGTTTCTCGCTGTAGGACTGTTTGTCATCAGC
GTACTTGTATTCGAACCAAAGTTCATATCAATGATTCGATCATTTAGGTC
GCATCAGGACTAA
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protein sequence of Gchil9113.t1

>Gchil9113.t1 ID=Gchil9113.t1|Name=Gchil9113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=521bp
MSDTRDVARAAANGVQSHLVYQVSARVLSFLIKALVVRALKPAHFAFVEI
RLYLFVGLTLLPTISGFRPVALRVPSDRACAALCYVCSLLTVALALVFGT
AMMYVQPEHWRASLVVTASLIARAFAEPPLIFARRRQRYSQSSRARAVAT
VISAFSQTLAISMLTSSKYASTAGALGHLTYSLTLAITMFFACGPQRVPL
LSPSAFRAALSYDHLVMAFVSTAEGAIKYLLENGEGIILDLTCPALAKAA
YKLVANLGSVMARFFSEALEEQSFNVFHRLAPAFRKKGNENDAHTRNACL
DTLFIAHKSALIVSFLFATVGPCYSYPLLRFLYGQKYADHTRAPYLLNLY
FVYLVFMAANGVTEAFVSASATTSELKSRTKFSTCLSVMYMIAMWYAATA
YEAAGIIVVNCANMAIRTCYSTWFFSKLTSRSPFTFLNSRPSVAVLSMLL
VARHISQLSEARFFGPAEARIPVDNVYDLMTRLLQHSLSGFLAVGLFVIS
VLVFEPKFISMIRSFRSHQD*
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mRNA from alignment at tig00004370_pilon:1928192..1929754+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9113.t1 ID=Gchil9113.t1|Name=Gchil9113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00004370_pilon:1928192..1929754+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGACACCAGAGATGTCGCGCGCGCCGCCGCAAACGGCGTGCAGTC
CCACCTCGTCTACCAAGTGAGCGCGCGTGTGCTCTCGTTTCTCATCAAGG
CGCTCGTTGTGCGCGCCCTAAAGCCCGCCCACTTCGCCTTTGTCGAGATT
CGTCTCTACCTTTTCGTCGGTCTCACCCTTCTTCCAACCATCAGTGGCTT
CCGCCCTGTCGCCCTGCGCGTCCCCTCTGACCGTGCTTGCGCCGCCCTGT
GTTATGTGTGCTCGCTGCTCACCGTGGCGCTTGCCCTCGTGTTTGGCACC
GCCATGATGTACGTGCAGCCGGAGCATTGGCGCGCCAGTCTCGTCGTTAC
TGCCAGTCTCATTGCGCGTGCCTTTGCAGAGCCTCCGCTTATTTTCGCCC
GCCGCCGACAGCGTTACTCCCAGTCTTCTCGCGCTCGCGCCGTCGCAACC
GTCATCAGCGCCTTCAGCCAGACACTCGCCATCAGCATGCTTACCAGCTC
AAAGTACGCGTCAACCGCGGGCGCCCTTGGTCACCTCACCTACTCGCTCA
CTTTGGCTATCACCATGTTTTTCGCATGCGGCCCGCAACGCGTCCCGCTT
CTTTCGCCATCCGCCTTTCGCGCTGCCTTAAGCTATGACCACCTTGTCAT
GGCCTTTGTCTCCACGGCTGAAGGCGCCATCAAATATCTTCTCGAGAACG
GCGAGGGCATAATTCTCGACCTCACTTGCCCCGCTCTTGCCAAAGCCGCC
TACAAGCTCGTCGCCAATTTGGGCAGCGTCATGGCCAGGTTTTTCAGCGA
GGCTTTGGAGGAACAGTCTTTCAACGTATTTCACCGACTCGCCCCGGCCT
TTCGGAAAAAGGGAAACGAAAACGATGCTCACACCCGCAACGCCTGTCTG
GACACCCTCTTCATTGCCCACAAATCCGCACTGATTGTTTCTTTTCTCTT
TGCCACAGTAGGGCCGTGCTACTCCTACCCGTTATTGCGCTTTTTGTACG
GACAAAAGTATGCAGATCATACCCGCGCCCCCTACTTGCTCAATCTCTAC
TTTGTCTACTTGGTCTTCATGGCAGCCAATGGAGTCACGGAGGCTTTTGT
GTCAGCGTCGGCTACCACGTCCGAACTCAAGTCGCGCACAAAGTTCAGTA
CCTGTCTCAGTGTCATGTACATGATTGCCATGTGGTATGCAGCCACTGCC
TATGAAGCCGCTGGAATAATTGTAGTTAACTGCGCCAACATGGCCATACG
CACATGCTATTCGACGTGGTTCTTTAGTAAGCTAACTTCACGATCGCCTT
TCACCTTCCTCAACTCCAGGCCCAGTGTAGCCGTGTTGTCTATGCTCCTT
GTCGCACGGCACATATCACAGCTCAGTGAGGCTCGCTTCTTTGGCCCGGC
CGAAGCAAGAATACCAGTTGACAACGTGTATGACCTCATGACTCGGCTTC
TTCAACACTCTCTCAGCGGGTTTCTCGCTGTAGGACTGTTTGTCATCAGC
GTACTTGTATTCGAACCAAAGTTCATATCAATGATTCGATCATTTAGGTC
GCATCAGGACTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1928192..1929754+

>Gchil9113.t1 ID=Gchil9113.t1|Name=Gchil9113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00004370_pilon:1928192..1929754+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGACACCAGAGATGTCGCGCGCGCCGCCGCAAACGGCGTGCAGTC
CCACCTCGTCTACCAAGTGAGCGCGCGTGTGCTCTCGTTTCTCATCAAGG
CGCTCGTTGTGCGCGCCCTAAAGCCCGCCCACTTCGCCTTTGTCGAGATT
CGTCTCTACCTTTTCGTCGGTCTCACCCTTCTTCCAACCATCAGTGGCTT
CCGCCCTGTCGCCCTGCGCGTCCCCTCTGACCGTGCTTGCGCCGCCCTGT
GTTATGTGTGCTCGCTGCTCACCGTGGCGCTTGCCCTCGTGTTTGGCACC
GCCATGATGTACGTGCAGCCGGAGCATTGGCGCGCCAGTCTCGTCGTTAC
TGCCAGTCTCATTGCGCGTGCCTTTGCAGAGCCTCCGCTTATTTTCGCCC
GCCGCCGACAGCGTTACTCCCAGTCTTCTCGCGCTCGCGCCGTCGCAACC
GTCATCAGCGCCTTCAGCCAGACACTCGCCATCAGCATGCTTACCAGCTC
AAAGTACGCGTCAACCGCGGGCGCCCTTGGTCACCTCACCTACTCGCTCA
CTTTGGCTATCACCATGTTTTTCGCATGCGGCCCGCAACGCGTCCCGCTT
CTTTCGCCATCCGCCTTTCGCGCTGCCTTAAGCTATGACCACCTTGTCAT
GGCCTTTGTCTCCACGGCTGAAGGCGCCATCAAATATCTTCTCGAGAACG
GCGAGGGCATAATTCTCGACCTCACTTGCCCCGCTCTTGCCAAAGCCGCC
TACAAGCTCGTCGCCAATTTGGGCAGCGTCATGGCCAGGTTTTTCAGCGA
GGCTTTGGAGGAACAGTCTTTCAACGTATTTCACCGACTCGCCCCGGCCT
TTCGGAAAAAGGGAAACGAAAACGATGCTCACACCCGCAACGCCTGTCTG
GACACCCTCTTCATTGCCCACAAATCCGCACTGATTGTTTCTTTTCTCTT
TGCCACAGTAGGGCCGTGCTACTCCTACCCGTTATTGCGCTTTTTGTACG
GACAAAAGTATGCAGATCATACCCGCGCCCCCTACTTGCTCAATCTCTAC
TTTGTCTACTTGGTCTTCATGGCAGCCAATGGAGTCACGGAGGCTTTTGT
GTCAGCGTCGGCTACCACGTCCGAACTCAAGTCGCGCACAAAGTTCAGTA
CCTGTCTCAGTGTCATGTACATGATTGCCATGTGGTATGCAGCCACTGCC
TATGAAGCCGCTGGAATAATTGTAGTTAACTGCGCCAACATGGCCATACG
CACATGCTATTCGACGTGGTTCTTTAGTAAGCTAACTTCACGATCGCCTT
TCACCTTCCTCAACTCCAGGCCCAGTGTAGCCGTGTTGTCTATGCTCCTT
GTCGCACGGCACATATCACAGCTCAGTGAGGCTCGCTTCTTTGGCCCGGC
CGAAGCAAGAATACCAGTTGACAACGTGTATGACCTCATGACTCGGCTTC
TTCAACACTCTCTCAGCGGGTTTCTCGCTGTAGGACTGTTTGTCATCAGC
GTACTTGTATTCGAACCAAAGTTCATATCAATGATTCGATCATTTAGGTC
GCATCAGGACTAA
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