Gchil9109.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9109.t1
Unique NameGchil9109.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1915700..1917280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog85681.XP_006449093.1
PFAMsFHA,Tyr-DNA_phospho
Max annot lvl35493|Streptophyta
KEGG koko:K10862
GOsGO:0000012,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0017005,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070259,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363
Evalue3.17e-66
EggNOG OGsKOG2031@1|root,KOG2031@2759|Eukaryota,37PRM@33090|Viridiplantae,3GGN1@35493|Streptophyta
DescriptionTyrosyl-DNA phosphodiesterase
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9109Gchil9109Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1915700..1917280 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9109.t1.start1Gchil9109.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1915700..1915702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9109.t1.CDS1Gchil9109.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1915700..1917280 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9109.t1.exon1Gchil9109.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1915700..1917280 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9109.t1.stop1Gchil9109.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1917278..1917280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9109.t1Gchil9109.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1915700..1917280 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9109.t1 ID=Gchil9109.t1|Name=Gchil9109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=527bp
MNTAKSSSTKVKRPRGQGRGGAVARKREHSPNGGRPDPCRRHNLEHAHDL
FFPGFYLLKTIGVNATFPTIRIEDIVLPGADLALICNYKFDVPWFWHRAP
AIQTCRKVLLVHGERVDEEEVWKKFLEGEGAVDRVRFVRPETPLYGTVHS
KVFALFYSNGCRICIHTANMVQQDWDYKTQGAYVRDFPKIERQASQRVGN
QDFKNQLLRYFAASLKGTERHEVLEAIEKYDYSSADVALISSIPGVHEAE
QNGWYGHQRLRSVLRDVVEEPDDDSVAVCQFSSLGSIQEKWLREEFGETL
FASKRSFKPKRPKHSNEIQLVYPTLNQVQESNEGIVAGSSLPVSGRNMHR
EHILSKLHKWDASISNRERAMPHIKTFLRYPRTQAQSPLWVLLGSFNLSV
AAWGRSLKPARKKTADRSKILSYELGVLFAPQLSCPAVFHLEHGTIFKTF
SSQEHHSWLGARSKCSVSLRLCGSHWRSRDEYNEEGGITIGPSALNVVHL
PIPYRLPAEQYQTKDTPWTVDLCSVT*
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spliced messenger RNA

>Gchil9109.t1 ID=Gchil9109.t1|Name=Gchil9109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00004370_pilon:1915700..1917280+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACAGCAAAGAGCTCCTCAACCAAAGTGAAAAGGCCTCGAGGGCA
AGGTCGTGGAGGAGCAGTGGCAAGGAAGCGCGAGCATAGTCCCAACGGTG
GACGCCCCGATCCATGTCGTCGTCACAATTTGGAACATGCCCATGATCTA
TTCTTCCCTGGATTCTACTTGCTCAAAACAATTGGAGTTAACGCAACTTT
TCCTACCATCCGAATAGAGGATATCGTACTACCTGGAGCAGACTTAGCTC
TGATCTGTAACTACAAATTCGATGTGCCCTGGTTTTGGCACCGAGCACCA
GCGATTCAAACATGTCGCAAAGTCCTTCTCGTGCATGGAGAACGAGTGGA
TGAAGAGGAAGTATGGAAAAAATTCTTAGAAGGTGAGGGTGCAGTTGATC
GTGTACGCTTTGTTCGACCGGAAACACCCTTGTATGGAACCGTTCACTCC
AAAGTTTTTGCCTTGTTTTACTCAAATGGGTGCAGAATATGTATTCATAC
CGCCAACATGGTACAACAAGACTGGGATTACAAGACGCAAGGTGCTTACG
TGCGAGATTTTCCAAAGATAGAGCGCCAAGCCTCGCAGAGAGTGGGAAAC
CAAGACTTCAAGAATCAGCTGCTTCGGTACTTTGCTGCCTCTCTGAAGGG
AACCGAGCGACATGAGGTACTGGAAGCAATTGAAAAGTATGACTATTCGT
CGGCTGACGTGGCTCTGATTTCAAGCATTCCAGGAGTTCATGAAGCAGAA
CAAAACGGATGGTATGGGCATCAGCGTCTGAGAAGCGTGCTCCGAGACGT
CGTAGAAGAACCTGACGACGATTCTGTTGCTGTTTGTCAATTCAGCTCAC
TTGGTTCGATTCAGGAAAAGTGGTTACGAGAAGAATTTGGCGAGACGCTG
TTCGCTAGTAAGCGAAGTTTCAAGCCAAAGAGACCCAAACACAGCAATGA
GATTCAGTTGGTATATCCAACTCTGAATCAAGTTCAAGAGTCGAATGAGG
GGATAGTAGCGGGGTCCTCTTTACCAGTGTCCGGGAGGAACATGCATAGA
GAGCACATTTTAAGCAAGTTGCACAAGTGGGACGCCAGTATCAGTAATAG
GGAGAGAGCAATGCCTCATATCAAAACATTCCTTCGCTACCCACGAACGC
AAGCGCAAAGTCCACTCTGGGTTTTGTTGGGGAGCTTCAACCTGAGTGTC
GCAGCATGGGGACGAAGTCTCAAACCAGCTAGAAAAAAAACCGCTGATCG
CAGCAAGATTTTATCGTACGAGTTGGGTGTCCTATTCGCCCCGCAGTTGT
CCTGCCCTGCCGTGTTTCATCTCGAGCATGGCACAATTTTCAAGACATTT
TCATCCCAGGAACATCACTCTTGGCTGGGAGCAAGAAGTAAATGCTCCGT
AAGCCTGCGACTGTGTGGAAGCCATTGGAGAAGTAGGGATGAATATAATG
AAGAGGGTGGTATAACTATCGGACCAAGCGCATTGAATGTGGTTCATTTG
CCAATTCCCTACAGACTACCGGCTGAACAATACCAAACAAAGGACACACC
TTGGACCGTTGATCTCTGTTCGGTGACGTGA
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protein sequence of Gchil9109.t1

>Gchil9109.t1 ID=Gchil9109.t1|Name=Gchil9109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=527bp
MNTAKSSSTKVKRPRGQGRGGAVARKREHSPNGGRPDPCRRHNLEHAHDL
FFPGFYLLKTIGVNATFPTIRIEDIVLPGADLALICNYKFDVPWFWHRAP
AIQTCRKVLLVHGERVDEEEVWKKFLEGEGAVDRVRFVRPETPLYGTVHS
KVFALFYSNGCRICIHTANMVQQDWDYKTQGAYVRDFPKIERQASQRVGN
QDFKNQLLRYFAASLKGTERHEVLEAIEKYDYSSADVALISSIPGVHEAE
QNGWYGHQRLRSVLRDVVEEPDDDSVAVCQFSSLGSIQEKWLREEFGETL
FASKRSFKPKRPKHSNEIQLVYPTLNQVQESNEGIVAGSSLPVSGRNMHR
EHILSKLHKWDASISNRERAMPHIKTFLRYPRTQAQSPLWVLLGSFNLSV
AAWGRSLKPARKKTADRSKILSYELGVLFAPQLSCPAVFHLEHGTIFKTF
SSQEHHSWLGARSKCSVSLRLCGSHWRSRDEYNEEGGITIGPSALNVVHL
PIPYRLPAEQYQTKDTPWTVDLCSVT*
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mRNA from alignment at tig00004370_pilon:1915700..1917280+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9109.t1 ID=Gchil9109.t1|Name=Gchil9109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00004370_pilon:1915700..1917280+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACAGCAAAGAGCTCCTCAACCAAAGTGAAAAGGCCTCGAGGGCA
AGGTCGTGGAGGAGCAGTGGCAAGGAAGCGCGAGCATAGTCCCAACGGTG
GACGCCCCGATCCATGTCGTCGTCACAATTTGGAACATGCCCATGATCTA
TTCTTCCCTGGATTCTACTTGCTCAAAACAATTGGAGTTAACGCAACTTT
TCCTACCATCCGAATAGAGGATATCGTACTACCTGGAGCAGACTTAGCTC
TGATCTGTAACTACAAATTCGATGTGCCCTGGTTTTGGCACCGAGCACCA
GCGATTCAAACATGTCGCAAAGTCCTTCTCGTGCATGGAGAACGAGTGGA
TGAAGAGGAAGTATGGAAAAAATTCTTAGAAGGTGAGGGTGCAGTTGATC
GTGTACGCTTTGTTCGACCGGAAACACCCTTGTATGGAACCGTTCACTCC
AAAGTTTTTGCCTTGTTTTACTCAAATGGGTGCAGAATATGTATTCATAC
CGCCAACATGGTACAACAAGACTGGGATTACAAGACGCAAGGTGCTTACG
TGCGAGATTTTCCAAAGATAGAGCGCCAAGCCTCGCAGAGAGTGGGAAAC
CAAGACTTCAAGAATCAGCTGCTTCGGTACTTTGCTGCCTCTCTGAAGGG
AACCGAGCGACATGAGGTACTGGAAGCAATTGAAAAGTATGACTATTCGT
CGGCTGACGTGGCTCTGATTTCAAGCATTCCAGGAGTTCATGAAGCAGAA
CAAAACGGATGGTATGGGCATCAGCGTCTGAGAAGCGTGCTCCGAGACGT
CGTAGAAGAACCTGACGACGATTCTGTTGCTGTTTGTCAATTCAGCTCAC
TTGGTTCGATTCAGGAAAAGTGGTTACGAGAAGAATTTGGCGAGACGCTG
TTCGCTAGTAAGCGAAGTTTCAAGCCAAAGAGACCCAAACACAGCAATGA
GATTCAGTTGGTATATCCAACTCTGAATCAAGTTCAAGAGTCGAATGAGG
GGATAGTAGCGGGGTCCTCTTTACCAGTGTCCGGGAGGAACATGCATAGA
GAGCACATTTTAAGCAAGTTGCACAAGTGGGACGCCAGTATCAGTAATAG
GGAGAGAGCAATGCCTCATATCAAAACATTCCTTCGCTACCCACGAACGC
AAGCGCAAAGTCCACTCTGGGTTTTGTTGGGGAGCTTCAACCTGAGTGTC
GCAGCATGGGGACGAAGTCTCAAACCAGCTAGAAAAAAAACCGCTGATCG
CAGCAAGATTTTATCGTACGAGTTGGGTGTCCTATTCGCCCCGCAGTTGT
CCTGCCCTGCCGTGTTTCATCTCGAGCATGGCACAATTTTCAAGACATTT
TCATCCCAGGAACATCACTCTTGGCTGGGAGCAAGAAGTAAATGCTCCGT
AAGCCTGCGACTGTGTGGAAGCCATTGGAGAAGTAGGGATGAATATAATG
AAGAGGGTGGTATAACTATCGGACCAAGCGCATTGAATGTGGTTCATTTG
CCAATTCCCTACAGACTACCGGCTGAACAATACCAAACAAAGGACACACC
TTGGACCGTTGATCTCTGTTCGGTGACGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1915700..1917280+

>Gchil9109.t1 ID=Gchil9109.t1|Name=Gchil9109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1581bp|location=Sequence derived from alignment at tig00004370_pilon:1915700..1917280+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACAGCAAAGAGCTCCTCAACCAAAGTGAAAAGGCCTCGAGGGCA
AGGTCGTGGAGGAGCAGTGGCAAGGAAGCGCGAGCATAGTCCCAACGGTG
GACGCCCCGATCCATGTCGTCGTCACAATTTGGAACATGCCCATGATCTA
TTCTTCCCTGGATTCTACTTGCTCAAAACAATTGGAGTTAACGCAACTTT
TCCTACCATCCGAATAGAGGATATCGTACTACCTGGAGCAGACTTAGCTC
TGATCTGTAACTACAAATTCGATGTGCCCTGGTTTTGGCACCGAGCACCA
GCGATTCAAACATGTCGCAAAGTCCTTCTCGTGCATGGAGAACGAGTGGA
TGAAGAGGAAGTATGGAAAAAATTCTTAGAAGGTGAGGGTGCAGTTGATC
GTGTACGCTTTGTTCGACCGGAAACACCCTTGTATGGAACCGTTCACTCC
AAAGTTTTTGCCTTGTTTTACTCAAATGGGTGCAGAATATGTATTCATAC
CGCCAACATGGTACAACAAGACTGGGATTACAAGACGCAAGGTGCTTACG
TGCGAGATTTTCCAAAGATAGAGCGCCAAGCCTCGCAGAGAGTGGGAAAC
CAAGACTTCAAGAATCAGCTGCTTCGGTACTTTGCTGCCTCTCTGAAGGG
AACCGAGCGACATGAGGTACTGGAAGCAATTGAAAAGTATGACTATTCGT
CGGCTGACGTGGCTCTGATTTCAAGCATTCCAGGAGTTCATGAAGCAGAA
CAAAACGGATGGTATGGGCATCAGCGTCTGAGAAGCGTGCTCCGAGACGT
CGTAGAAGAACCTGACGACGATTCTGTTGCTGTTTGTCAATTCAGCTCAC
TTGGTTCGATTCAGGAAAAGTGGTTACGAGAAGAATTTGGCGAGACGCTG
TTCGCTAGTAAGCGAAGTTTCAAGCCAAAGAGACCCAAACACAGCAATGA
GATTCAGTTGGTATATCCAACTCTGAATCAAGTTCAAGAGTCGAATGAGG
GGATAGTAGCGGGGTCCTCTTTACCAGTGTCCGGGAGGAACATGCATAGA
GAGCACATTTTAAGCAAGTTGCACAAGTGGGACGCCAGTATCAGTAATAG
GGAGAGAGCAATGCCTCATATCAAAACATTCCTTCGCTACCCACGAACGC
AAGCGCAAAGTCCACTCTGGGTTTTGTTGGGGAGCTTCAACCTGAGTGTC
GCAGCATGGGGACGAAGTCTCAAACCAGCTAGAAAAAAAACCGCTGATCG
CAGCAAGATTTTATCGTACGAGTTGGGTGTCCTATTCGCCCCGCAGTTGT
CCTGCCCTGCCGTGTTTCATCTCGAGCATGGCACAATTTTCAAGACATTT
TCATCCCAGGAACATCACTCTTGGCTGGGAGCAAGAAGTAAATGCTCCGT
AAGCCTGCGACTGTGTGGAAGCCATTGGAGAAGTAGGGATGAATATAATG
AAGAGGGTGGTATAACTATCGGACCAAGCGCATTGAATGTGGTTCATTTG
CCAATTCCCTACAGACTACCGGCTGAACAATACCAAACAAAGGACACACC
TTGGACCGTTGATCTCTGTTCGGTGACGTGA
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