Gchil9107.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9107.t2
Unique Name	Gchil9107.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1909446..1910885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705666.1
Preferred name	CYB5D2
PFAMs	Cyt-b5
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00109,RC00110,RC00158
KEGG ko	ko:K00287
KEGG Reaction	R00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathway	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG Module	M00126,M00840
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0012505,GO:0016020,GO:0020037,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046906,GO:0048037,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0097159,GO:1901363,GO:2000026
Evalue	6.07e-147
EggNOG OGs	KOG1110@1\|root,KOG1108@2759\|Eukaryota
EC	1.5.1.3
Description	heme binding
COG category	K
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9107	Gchil9107	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1909446..1910885 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t2.start1	Gchil9107.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1909446..1909448 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t2.CDS1	Gchil9107.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1909446..1910885 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t2.exon1	Gchil9107.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1909446..1910885 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t2.stop1	Gchil9107.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1910883..1910885 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t2	Gchil9107.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1909446..1910885 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1909446..1910885+
coding sequence from alignment at tig00004370_pilon:1909446..1910885+

mRNA sequence

>Gchil9107.t2 ID=Gchil9107.t2|Name=Gchil9107.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MATGKAAFANSVPLCSNMLGGTSVLLPAIFGHKATSRNISPFSIKRPSRV
TAPVAVLSEWPADEESAKSCHIPLSDTGVFSINPDLLHVDNEENLRGFVK
TRGSLIPGEQFVFWWVGDIYDLIDGQPTKHLFSFEGYNIGRMVRVDGGWR
MLTREVGLYKHPRTGRILDVWENPYTGATNQCIHVWNNPVNQQFLLKGPR
GPFKVPTTVRDNDVYWHAEVFLNYKSPISRSEFPENAASDLYQSAEMFQF
FTTKQELLSEDPSADCVISWVRVGQWLPWMEMGDRPGRMLYHCRGKKLVN
GFADLPDQVQSYILDQKPEYSSAPTNFTTPNETSWTYMRKLLANRGAPRA
DGRIARPATAESQLSRPNGGTIQPPEELSREELKQYNGRDVRLPVLLAVD
GEVFDVSHAKRHYGPGETYHCLVGRDASWALVSGDLSEEALRECDLHLQD
RMDEAQRADLKHWRGFFSKNYKRVARLVD*

spliced messenger RNA

>Gchil9107.t2 ID=Gchil9107.t2|Name=Gchil9107.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004370_pilon:1909446..1910885+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACGGGTAAGGCTGCCTTCGCGAACTCTGTGCCGTTGTGCAGTAA
CATGTTAGGCGGAACTTCCGTCCTCCTTCCTGCCATTTTCGGGCACAAAG
CTACATCACGCAACATCAGTCCATTTTCTATCAAACGGCCATCAAGAGTG
ACCGCTCCCGTCGCAGTGCTTTCTGAATGGCCCGCTGATGAAGAATCTGC
AAAGAGCTGCCACATACCACTTTCAGATACAGGTGTGTTCAGCATCAACC
CTGACTTGCTCCATGTCGACAATGAGGAAAACCTGCGCGGTTTCGTGAAG
ACCAGAGGCAGCCTTATACCTGGGGAACAGTTCGTGTTCTGGTGGGTAGG
GGATATTTACGACCTGATTGACGGGCAACCGACGAAGCATCTTTTCTCGT
TCGAAGGATATAATATAGggcggatggtacgtgtggatggtggatggcga
atgCTCACCAGAGAAGTTGGCTTGTACAAGCACCCTCGCACCGGTCGCAT
CCTCGATGTCTGGGAAAATCCGTATACTGGTGCCACTAATCAATGTATTC
ATGTATGGAATAACCCCGTCAATCAACAATTCCTTTTAAAAGGACCTCGC
GGTCCGTTCAAGGTGCCAACTACGGTGCGCGACAATGATGTCTACTGGCA
TGCAGAAGTCTTCCTTAACTACAAATCACCGATTTCTCGGTCAGAATTCC
CCGAAAACGCTGCGTCTGACTTGTACCAATCTGCGGAAATGTTCCAGTTC
TTCACCACAAAGCAGGAACTGCTTTCTGAAGACCCCAGCGCAGACTGTGT
CATTAGCTGGGTGAGAGTAGGTCAATGGCTGCCATGGATGGAAATGGGTG
ACAGGCCTGGTCGTATGCTCTATCATTGTCGCGGAAAAAAGCTCGTCAAT
GGCTTTGCAGACTTACCTGACCAAGTTCAATCGTACATTCTCGACCAAAA
GCCAGAGTACAGCTCTGCACCCACCAACTTTACGACCCCGAATGAAACTA
GTTGGACGTACATGCGAAAATTGCTAGCAAATCGCGGTGCTCCTCGCGCA
GACGGACGTATCGCCCGTCCTGCAACCGCTGAATCACAACTGTCTCGACC
TAACGGTGGCACCATACAGCCACCGGAAGAGTTATCCCGAGAAGAATTGA
AGCAATATAACGGAAGAGATGTGCGGTTGCCAGTGCTGTTGGCGGTGGAT
GGAGAAGTTTTCGATGTAAGCCACGCGAAGAGACATTACGGTCCCGGGGA
AACATATCATTGCCTGGTTGGACGCGACGCCAGCTGGGCTCTTGTCAGCG
GCGACCTTTCCGAAGAAGCGCTCCGCGAATGTGACCTTCATTTACAAGAT
CGCATGGATGAAGCGCAACGTGCTGACTTGAAGCATTGGAGGGGATTCTT
TTCCAAAAACTACAAACGCGTTGCAAGACTTGTTGATTAG

protein sequence of Gchil9107.t2

>Gchil9107.t2 ID=Gchil9107.t2|Name=Gchil9107.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MATGKAAFANSVPLCSNMLGGTSVLLPAIFGHKATSRNISPFSIKRPSRV
TAPVAVLSEWPADEESAKSCHIPLSDTGVFSINPDLLHVDNEENLRGFVK
TRGSLIPGEQFVFWWVGDIYDLIDGQPTKHLFSFEGYNIGRMVRVDGGWR
MLTREVGLYKHPRTGRILDVWENPYTGATNQCIHVWNNPVNQQFLLKGPR
GPFKVPTTVRDNDVYWHAEVFLNYKSPISRSEFPENAASDLYQSAEMFQF
FTTKQELLSEDPSADCVISWVRVGQWLPWMEMGDRPGRMLYHCRGKKLVN
GFADLPDQVQSYILDQKPEYSSAPTNFTTPNETSWTYMRKLLANRGAPRA
DGRIARPATAESQLSRPNGGTIQPPEELSREELKQYNGRDVRLPVLLAVD
GEVFDVSHAKRHYGPGETYHCLVGRDASWALVSGDLSEEALRECDLHLQD
RMDEAQRADLKHWRGFFSKNYKRVARLVD*

mRNA from alignment at tig00004370_pilon:1909446..1910885+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9107.t2 ID=Gchil9107.t2|Name=Gchil9107.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004370_pilon:1909446..1910885+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACGGGTAAGGCTGCCTTCGCGAACTCTGTGCCGTTGTGCAGTAA
CATGTTAGGCGGAACTTCCGTCCTCCTTCCTGCCATTTTCGGGCACAAAG
CTACATCACGCAACATCAGTCCATTTTCTATCAAACGGCCATCAAGAGTG
ACCGCTCCCGTCGCAGTGCTTTCTGAATGGCCCGCTGATGAAGAATCTGC
AAAGAGCTGCCACATACCACTTTCAGATACAGGTGTGTTCAGCATCAACC
CTGACTTGCTCCATGTCGACAATGAGGAAAACCTGCGCGGTTTCGTGAAG
ACCAGAGGCAGCCTTATACCTGGGGAACAGTTCGTGTTCTGGTGGGTAGG
GGATATTTACGACCTGATTGACGGGCAACCGACGAAGCATCTTTTCTCGT
TCGAAGGATATAATATAGggcggatggtacgtgtggatggtggatggcga
atgCTCACCAGAGAAGTTGGCTTGTACAAGCACCCTCGCACCGGTCGCAT
CCTCGATGTCTGGGAAAATCCGTATACTGGTGCCACTAATCAATGTATTC
ATGTATGGAATAACCCCGTCAATCAACAATTCCTTTTAAAAGGACCTCGC
GGTCCGTTCAAGGTGCCAACTACGGTGCGCGACAATGATGTCTACTGGCA
TGCAGAAGTCTTCCTTAACTACAAATCACCGATTTCTCGGTCAGAATTCC
CCGAAAACGCTGCGTCTGACTTGTACCAATCTGCGGAAATGTTCCAGTTC
TTCACCACAAAGCAGGAACTGCTTTCTGAAGACCCCAGCGCAGACTGTGT
CATTAGCTGGGTGAGAGTAGGTCAATGGCTGCCATGGATGGAAATGGGTG
ACAGGCCTGGTCGTATGCTCTATCATTGTCGCGGAAAAAAGCTCGTCAAT
GGCTTTGCAGACTTACCTGACCAAGTTCAATCGTACATTCTCGACCAAAA
GCCAGAGTACAGCTCTGCACCCACCAACTTTACGACCCCGAATGAAACTA
GTTGGACGTACATGCGAAAATTGCTAGCAAATCGCGGTGCTCCTCGCGCA
GACGGACGTATCGCCCGTCCTGCAACCGCTGAATCACAACTGTCTCGACC
TAACGGTGGCACCATACAGCCACCGGAAGAGTTATCCCGAGAAGAATTGA
AGCAATATAACGGAAGAGATGTGCGGTTGCCAGTGCTGTTGGCGGTGGAT
GGAGAAGTTTTCGATGTAAGCCACGCGAAGAGACATTACGGTCCCGGGGA
AACATATCATTGCCTGGTTGGACGCGACGCCAGCTGGGCTCTTGTCAGCG
GCGACCTTTCCGAAGAAGCGCTCCGCGAATGTGACCTTCATTTACAAGAT
CGCATGGATGAAGCGCAACGTGCTGACTTGAAGCATTGGAGGGGATTCTT
TTCCAAAAACTACAAACGCGTTGCAAGACTTGTTGATTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:1909446..1910885+

>Gchil9107.t2 ID=Gchil9107.t2|Name=Gchil9107.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00004370_pilon:1909446..1910885+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACGGGTAAGGCTGCCTTCGCGAACTCTGTGCCGTTGTGCAGTAA
CATGTTAGGCGGAACTTCCGTCCTCCTTCCTGCCATTTTCGGGCACAAAG
CTACATCACGCAACATCAGTCCATTTTCTATCAAACGGCCATCAAGAGTG
ACCGCTCCCGTCGCAGTGCTTTCTGAATGGCCCGCTGATGAAGAATCTGC
AAAGAGCTGCCACATACCACTTTCAGATACAGGTGTGTTCAGCATCAACC
CTGACTTGCTCCATGTCGACAATGAGGAAAACCTGCGCGGTTTCGTGAAG
ACCAGAGGCAGCCTTATACCTGGGGAACAGTTCGTGTTCTGGTGGGTAGG
GGATATTTACGACCTGATTGACGGGCAACCGACGAAGCATCTTTTCTCGT
TCGAAGGATATAATATAGggcggatggtacgtgtggatggtggatggcga
atgCTCACCAGAGAAGTTGGCTTGTACAAGCACCCTCGCACCGGTCGCAT
CCTCGATGTCTGGGAAAATCCGTATACTGGTGCCACTAATCAATGTATTC
ATGTATGGAATAACCCCGTCAATCAACAATTCCTTTTAAAAGGACCTCGC
GGTCCGTTCAAGGTGCCAACTACGGTGCGCGACAATGATGTCTACTGGCA
TGCAGAAGTCTTCCTTAACTACAAATCACCGATTTCTCGGTCAGAATTCC
CCGAAAACGCTGCGTCTGACTTGTACCAATCTGCGGAAATGTTCCAGTTC
TTCACCACAAAGCAGGAACTGCTTTCTGAAGACCCCAGCGCAGACTGTGT
CATTAGCTGGGTGAGAGTAGGTCAATGGCTGCCATGGATGGAAATGGGTG
ACAGGCCTGGTCGTATGCTCTATCATTGTCGCGGAAAAAAGCTCGTCAAT
GGCTTTGCAGACTTACCTGACCAAGTTCAATCGTACATTCTCGACCAAAA
GCCAGAGTACAGCTCTGCACCCACCAACTTTACGACCCCGAATGAAACTA
GTTGGACGTACATGCGAAAATTGCTAGCAAATCGCGGTGCTCCTCGCGCA
GACGGACGTATCGCCCGTCCTGCAACCGCTGAATCACAACTGTCTCGACC
TAACGGTGGCACCATACAGCCACCGGAAGAGTTATCCCGAGAAGAATTGA
AGCAATATAACGGAAGAGATGTGCGGTTGCCAGTGCTGTTGGCGGTGGAT
GGAGAAGTTTTCGATGTAAGCCACGCGAAGAGACATTACGGTCCCGGGGA
AACATATCATTGCCTGGTTGGACGCGACGCCAGCTGGGCTCTTGTCAGCG
GCGACCTTTCCGAAGAAGCGCTCCGCGAATGTGACCTTCATTTACAAGAT
CGCATGGATGAAGCGCAACGTGCTGACTTGAAGCATTGGAGGGGATTCTT
TTCCAAAAACTACAAACGCGTTGCAAGACTTGTTGATTAG