Gchil9107.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9107.t1
Unique Name	Gchil9107.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	330

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1909896..1910885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705666.1
Preferred name	CYB5D2
PFAMs	Cyt-b5
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00109,RC00110,RC00158
KEGG ko	ko:K00287
KEGG Reaction	R00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathway	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG Module	M00126,M00840
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0012505,GO:0016020,GO:0020037,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046906,GO:0048037,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0097159,GO:1901363,GO:2000026
Evalue	1.61e-106
EggNOG OGs	KOG1110@1\|root,KOG1108@2759\|Eukaryota
EC	1.5.1.3
Description	heme binding
COG category	K
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9107	Gchil9107	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1909446..1910885 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t1.start1	Gchil9107.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1909896..1909898 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t1.CDS1	Gchil9107.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1909896..1910885 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t1.exon1	Gchil9107.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1909896..1910885 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t1.stop1	Gchil9107.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1910883..1910885 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9107.t1	Gchil9107.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1909896..1910885 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1909896..1910885+
coding sequence from alignment at tig00004370_pilon:1909896..1910885+

mRNA sequence

>Gchil9107.t1 ID=Gchil9107.t1|Name=Gchil9107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=330bp
MLTREVGLYKHPRTGRILDVWENPYTGATNQCIHVWNNPVNQQFLLKGPR
GPFKVPTTVRDNDVYWHAEVFLNYKSPISRSEFPENAASDLYQSAEMFQF
FTTKQELLSEDPSADCVISWVRVGQWLPWMEMGDRPGRMLYHCRGKKLVN
GFADLPDQVQSYILDQKPEYSSAPTNFTTPNETSWTYMRKLLANRGAPRA
DGRIARPATAESQLSRPNGGTIQPPEELSREELKQYNGRDVRLPVLLAVD
GEVFDVSHAKRHYGPGETYHCLVGRDASWALVSGDLSEEALRECDLHLQD
RMDEAQRADLKHWRGFFSKNYKRVARLVD*

spliced messenger RNA

>Gchil9107.t1 ID=Gchil9107.t1|Name=Gchil9107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00004370_pilon:1909896..1910885+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgCTCACCAGAGAAGTTGGCTTGTACAAGCACCCTCGCACCGGTCGCAT
CCTCGATGTCTGGGAAAATCCGTATACTGGTGCCACTAATCAATGTATTC
ATGTATGGAATAACCCCGTCAATCAACAATTCCTTTTAAAAGGACCTCGC
GGTCCGTTCAAGGTGCCAACTACGGTGCGCGACAATGATGTCTACTGGCA
TGCAGAAGTCTTCCTTAACTACAAATCACCGATTTCTCGGTCAGAATTCC
CCGAAAACGCTGCGTCTGACTTGTACCAATCTGCGGAAATGTTCCAGTTC
TTCACCACAAAGCAGGAACTGCTTTCTGAAGACCCCAGCGCAGACTGTGT
CATTAGCTGGGTGAGAGTAGGTCAATGGCTGCCATGGATGGAAATGGGTG
ACAGGCCTGGTCGTATGCTCTATCATTGTCGCGGAAAAAAGCTCGTCAAT
GGCTTTGCAGACTTACCTGACCAAGTTCAATCGTACATTCTCGACCAAAA
GCCAGAGTACAGCTCTGCACCCACCAACTTTACGACCCCGAATGAAACTA
GTTGGACGTACATGCGAAAATTGCTAGCAAATCGCGGTGCTCCTCGCGCA
GACGGACGTATCGCCCGTCCTGCAACCGCTGAATCACAACTGTCTCGACC
TAACGGTGGCACCATACAGCCACCGGAAGAGTTATCCCGAGAAGAATTGA
AGCAATATAACGGAAGAGATGTGCGGTTGCCAGTGCTGTTGGCGGTGGAT
GGAGAAGTTTTCGATGTAAGCCACGCGAAGAGACATTACGGTCCCGGGGA
AACATATCATTGCCTGGTTGGACGCGACGCCAGCTGGGCTCTTGTCAGCG
GCGACCTTTCCGAAGAAGCGCTCCGCGAATGTGACCTTCATTTACAAGAT
CGCATGGATGAAGCGCAACGTGCTGACTTGAAGCATTGGAGGGGATTCTT
TTCCAAAAACTACAAACGCGTTGCAAGACTTGTTGATTAG

protein sequence of Gchil9107.t1

>Gchil9107.t1 ID=Gchil9107.t1|Name=Gchil9107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=330bp
MLTREVGLYKHPRTGRILDVWENPYTGATNQCIHVWNNPVNQQFLLKGPR
GPFKVPTTVRDNDVYWHAEVFLNYKSPISRSEFPENAASDLYQSAEMFQF
FTTKQELLSEDPSADCVISWVRVGQWLPWMEMGDRPGRMLYHCRGKKLVN
GFADLPDQVQSYILDQKPEYSSAPTNFTTPNETSWTYMRKLLANRGAPRA
DGRIARPATAESQLSRPNGGTIQPPEELSREELKQYNGRDVRLPVLLAVD
GEVFDVSHAKRHYGPGETYHCLVGRDASWALVSGDLSEEALRECDLHLQD
RMDEAQRADLKHWRGFFSKNYKRVARLVD*

mRNA from alignment at tig00004370_pilon:1909896..1910885+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9107.t1 ID=Gchil9107.t1|Name=Gchil9107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00004370_pilon:1909896..1910885+ (Gracilaria chilensis NLEC103_M9 male)
atgCTCACCAGAGAAGTTGGCTTGTACAAGCACCCTCGCACCGGTCGCAT
CCTCGATGTCTGGGAAAATCCGTATACTGGTGCCACTAATCAATGTATTC
ATGTATGGAATAACCCCGTCAATCAACAATTCCTTTTAAAAGGACCTCGC
GGTCCGTTCAAGGTGCCAACTACGGTGCGCGACAATGATGTCTACTGGCA
TGCAGAAGTCTTCCTTAACTACAAATCACCGATTTCTCGGTCAGAATTCC
CCGAAAACGCTGCGTCTGACTTGTACCAATCTGCGGAAATGTTCCAGTTC
TTCACCACAAAGCAGGAACTGCTTTCTGAAGACCCCAGCGCAGACTGTGT
CATTAGCTGGGTGAGAGTAGGTCAATGGCTGCCATGGATGGAAATGGGTG
ACAGGCCTGGTCGTATGCTCTATCATTGTCGCGGAAAAAAGCTCGTCAAT
GGCTTTGCAGACTTACCTGACCAAGTTCAATCGTACATTCTCGACCAAAA
GCCAGAGTACAGCTCTGCACCCACCAACTTTACGACCCCGAATGAAACTA
GTTGGACGTACATGCGAAAATTGCTAGCAAATCGCGGTGCTCCTCGCGCA
GACGGACGTATCGCCCGTCCTGCAACCGCTGAATCACAACTGTCTCGACC
TAACGGTGGCACCATACAGCCACCGGAAGAGTTATCCCGAGAAGAATTGA
AGCAATATAACGGAAGAGATGTGCGGTTGCCAGTGCTGTTGGCGGTGGAT
GGAGAAGTTTTCGATGTAAGCCACGCGAAGAGACATTACGGTCCCGGGGA
AACATATCATTGCCTGGTTGGACGCGACGCCAGCTGGGCTCTTGTCAGCG
GCGACCTTTCCGAAGAAGCGCTCCGCGAATGTGACCTTCATTTACAAGAT
CGCATGGATGAAGCGCAACGTGCTGACTTGAAGCATTGGAGGGGATTCTT
TTCCAAAAACTACAAACGCGTTGCAAGACTTGTTGATTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:1909896..1910885+

>Gchil9107.t1 ID=Gchil9107.t1|Name=Gchil9107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00004370_pilon:1909896..1910885+ (Gracilaria chilensis NLEC103_M9 male)
atgCTCACCAGAGAAGTTGGCTTGTACAAGCACCCTCGCACCGGTCGCAT
CCTCGATGTCTGGGAAAATCCGTATACTGGTGCCACTAATCAATGTATTC
ATGTATGGAATAACCCCGTCAATCAACAATTCCTTTTAAAAGGACCTCGC
GGTCCGTTCAAGGTGCCAACTACGGTGCGCGACAATGATGTCTACTGGCA
TGCAGAAGTCTTCCTTAACTACAAATCACCGATTTCTCGGTCAGAATTCC
CCGAAAACGCTGCGTCTGACTTGTACCAATCTGCGGAAATGTTCCAGTTC
TTCACCACAAAGCAGGAACTGCTTTCTGAAGACCCCAGCGCAGACTGTGT
CATTAGCTGGGTGAGAGTAGGTCAATGGCTGCCATGGATGGAAATGGGTG
ACAGGCCTGGTCGTATGCTCTATCATTGTCGCGGAAAAAAGCTCGTCAAT
GGCTTTGCAGACTTACCTGACCAAGTTCAATCGTACATTCTCGACCAAAA
GCCAGAGTACAGCTCTGCACCCACCAACTTTACGACCCCGAATGAAACTA
GTTGGACGTACATGCGAAAATTGCTAGCAAATCGCGGTGCTCCTCGCGCA
GACGGACGTATCGCCCGTCCTGCAACCGCTGAATCACAACTGTCTCGACC
TAACGGTGGCACCATACAGCCACCGGAAGAGTTATCCCGAGAAGAATTGA
AGCAATATAACGGAAGAGATGTGCGGTTGCCAGTGCTGTTGGCGGTGGAT
GGAGAAGTTTTCGATGTAAGCCACGCGAAGAGACATTACGGTCCCGGGGA
AACATATCATTGCCTGGTTGGACGCGACGCCAGCTGGGCTCTTGTCAGCG
GCGACCTTTCCGAAGAAGCGCTCCGCGAATGTGACCTTCATTTACAAGAT
CGCATGGATGAAGCGCAACGTGCTGACTTGAAGCATTGGAGGGGATTCTT
TTCCAAAAACTACAAACGCGTTGCAAGACTTGTTGATTAG