Gchil9106.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9106.t1
Unique NameGchil9106.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1904585..1905685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog411684.HPDFL43_19582
Preferred namenudC
PFAMsNUDIX,NUDIX-like,zf-NADH-PPase
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002
KEGG koko:K03426
KEGG ReactionR00103,R03004,R11104
KEGG Pathwayko00760,ko01100,ko04146,map00760,map01100,map04146
Evalue1.86e-58
EggNOG OGsCOG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,2TVMG@28211|Alphaproteobacteria,43IM0@69277|Phyllobacteriaceae
EC3.6.1.22
DescriptionNADH pyrophosphatase-like rudimentary NUDIX domain
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9106Gchil9106Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1904585..1905685 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9106.t1.stop1Gchil9106.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1904585..1904587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9106.t1.CDS1Gchil9106.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1904585..1905685 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9106.t1.exon1Gchil9106.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1904585..1905685 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9106.t1.start1Gchil9106.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1905683..1905685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9106.t1Gchil9106.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1904585..1905685 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9106.t1 ID=Gchil9106.t1|Name=Gchil9106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=367bp
MKPHVLIPELQPCVFGGPSLNRLNNFRHYPETSAKLCHPKAKYVVLSSEL
KVLIRSSGCTTFLALLSATACSQFPTGLEGPLLLGVDADDTPYIALQILQ
SADETQAPIPSDTRFVHLRAVLSDISSAHASIAAHARSLFAFHERHKFCG
RCGAMTVSDRAGARRRCVRNVLDVEPSEIKLSDDKQCDGVWFPRTDPVVI
MLVVAPCGERILLGRQKRYPPGLYSCLAGFMEHGEGVEDAVRREVFEESS
VRVGRVRFFASQPWPFPYSLMLGCVAQADSEEILIDADELEHAKWFSREE
VEKMMARNVSDARSPKVGETDDELYAPPTAAIAGRLLEIFTLQEPITLFA
TRETQTCDTQLRLGAL*
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spliced messenger RNA

>Gchil9106.t1 ID=Gchil9106.t1|Name=Gchil9106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004370_pilon:1904585..1905685- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCGCATGTGCTCATCCCCGAGCTACAGCCGTGCGTTTTTGGCGG
ACCCTCTTTAAATCGTCTTAACAATTTCCGTCATTATCCAGAGACTTCGG
CCAAACTCTGCCACCCCAAGGCGAAGTACGTAGTTCTCAGTTCCGAGCTG
AAAGTGTTGATCCGCTCTTCAGGATGCACCACCTTCCTTGCTCTACTCTC
CGCTACTGCTTGCAGTCAATTTCCTACCGGTCTGGAAGGCCCCTTGCTGC
TCGGCGTTGATGCAGACGATACTCCATATATCGCACTACAAATATTGCAG
TCCGCCGATGAAACACAAGCGCCCATACCGTCAGATACCCGATTCGTTCA
CTTGAGAGCGGTATTATCAGATATTTCGTCGGCGCATGCGTCTATAGCTG
CACACGCGCGCTCACTCTTTGCCTTTCATGAGCGCCACAAGTTTTGCGGA
CGGTGCGGAGCTATGACTGTTTCAGATCGCGCTGGTGCCCGCCGTCGGTG
CGTGCGAAATGTTCTTGATGTTGAACCGTCCGAAATCAAACTGAGTGATG
ACAAGCAATGTGACGGCGTATGGTTTCCTCGCACTGACCCTGTCGTCATC
ATGTTGGTAGTAGCTCCATGCGGGGAACGGATCTTGCTCGGAAGACAGAA
GAGATACCCTCCCGGATTGTACTCCTGCCTAGCTGGCTTCATGGAGCATG
GCGAGGGAGTTGAGGATGCGGTTCGAAGAGAGGTGTTCGAAGAGTCTAGT
GTCCGTGTTGGGCGCGTTCGCTTCTTCGCTTCGCAACCATGGCCGTTCCC
GTATTCACTCATGCTCGGATGCGTTGCCCAGGCAGATTCAGAAGAGATTC
TTATTGATGCGGACGAGTTGGAGCATGCAAAATGGTTTTCGCGGGAGGAA
GTTGAAAAGATGATGGCAAGGAACGTGTCAGATGCTCGATCTCCAAAGGT
AGGCGAAACAGATGATGAGTTGTACGCCCCGCCTACGGCTGCTATTGCTG
GAAGACTATTAGAGATATTTACTTTGCAGGAGCCCATCACATTGTTTGCC
ACAAGGGAAACGCAAACTTGTGATACGCAGCTTCGCTTAGGTGCTCTTTG
A
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protein sequence of Gchil9106.t1

>Gchil9106.t1 ID=Gchil9106.t1|Name=Gchil9106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=367bp
MKPHVLIPELQPCVFGGPSLNRLNNFRHYPETSAKLCHPKAKYVVLSSEL
KVLIRSSGCTTFLALLSATACSQFPTGLEGPLLLGVDADDTPYIALQILQ
SADETQAPIPSDTRFVHLRAVLSDISSAHASIAAHARSLFAFHERHKFCG
RCGAMTVSDRAGARRRCVRNVLDVEPSEIKLSDDKQCDGVWFPRTDPVVI
MLVVAPCGERILLGRQKRYPPGLYSCLAGFMEHGEGVEDAVRREVFEESS
VRVGRVRFFASQPWPFPYSLMLGCVAQADSEEILIDADELEHAKWFSREE
VEKMMARNVSDARSPKVGETDDELYAPPTAAIAGRLLEIFTLQEPITLFA
TRETQTCDTQLRLGAL*
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mRNA from alignment at tig00004370_pilon:1904585..1905685-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9106.t1 ID=Gchil9106.t1|Name=Gchil9106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004370_pilon:1904585..1905685- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCGCATGTGCTCATCCCCGAGCTACAGCCGTGCGTTTTTGGCGG
ACCCTCTTTAAATCGTCTTAACAATTTCCGTCATTATCCAGAGACTTCGG
CCAAACTCTGCCACCCCAAGGCGAAGTACGTAGTTCTCAGTTCCGAGCTG
AAAGTGTTGATCCGCTCTTCAGGATGCACCACCTTCCTTGCTCTACTCTC
CGCTACTGCTTGCAGTCAATTTCCTACCGGTCTGGAAGGCCCCTTGCTGC
TCGGCGTTGATGCAGACGATACTCCATATATCGCACTACAAATATTGCAG
TCCGCCGATGAAACACAAGCGCCCATACCGTCAGATACCCGATTCGTTCA
CTTGAGAGCGGTATTATCAGATATTTCGTCGGCGCATGCGTCTATAGCTG
CACACGCGCGCTCACTCTTTGCCTTTCATGAGCGCCACAAGTTTTGCGGA
CGGTGCGGAGCTATGACTGTTTCAGATCGCGCTGGTGCCCGCCGTCGGTG
CGTGCGAAATGTTCTTGATGTTGAACCGTCCGAAATCAAACTGAGTGATG
ACAAGCAATGTGACGGCGTATGGTTTCCTCGCACTGACCCTGTCGTCATC
ATGTTGGTAGTAGCTCCATGCGGGGAACGGATCTTGCTCGGAAGACAGAA
GAGATACCCTCCCGGATTGTACTCCTGCCTAGCTGGCTTCATGGAGCATG
GCGAGGGAGTTGAGGATGCGGTTCGAAGAGAGGTGTTCGAAGAGTCTAGT
GTCCGTGTTGGGCGCGTTCGCTTCTTCGCTTCGCAACCATGGCCGTTCCC
GTATTCACTCATGCTCGGATGCGTTGCCCAGGCAGATTCAGAAGAGATTC
TTATTGATGCGGACGAGTTGGAGCATGCAAAATGGTTTTCGCGGGAGGAA
GTTGAAAAGATGATGGCAAGGAACGTGTCAGATGCTCGATCTCCAAAGGT
AGGCGAAACAGATGATGAGTTGTACGCCCCGCCTACGGCTGCTATTGCTG
GAAGACTATTAGAGATATTTACTTTGCAGGAGCCCATCACATTGTTTGCC
ACAAGGGAAACGCAAACTTGTGATACGCAGCTTCGCTTAGGTGCTCTTTG
A
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Coding sequence (CDS) from alignment at tig00004370_pilon:1904585..1905685-

>Gchil9106.t1 ID=Gchil9106.t1|Name=Gchil9106.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00004370_pilon:1904585..1905685- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCGCATGTGCTCATCCCCGAGCTACAGCCGTGCGTTTTTGGCGG
ACCCTCTTTAAATCGTCTTAACAATTTCCGTCATTATCCAGAGACTTCGG
CCAAACTCTGCCACCCCAAGGCGAAGTACGTAGTTCTCAGTTCCGAGCTG
AAAGTGTTGATCCGCTCTTCAGGATGCACCACCTTCCTTGCTCTACTCTC
CGCTACTGCTTGCAGTCAATTTCCTACCGGTCTGGAAGGCCCCTTGCTGC
TCGGCGTTGATGCAGACGATACTCCATATATCGCACTACAAATATTGCAG
TCCGCCGATGAAACACAAGCGCCCATACCGTCAGATACCCGATTCGTTCA
CTTGAGAGCGGTATTATCAGATATTTCGTCGGCGCATGCGTCTATAGCTG
CACACGCGCGCTCACTCTTTGCCTTTCATGAGCGCCACAAGTTTTGCGGA
CGGTGCGGAGCTATGACTGTTTCAGATCGCGCTGGTGCCCGCCGTCGGTG
CGTGCGAAATGTTCTTGATGTTGAACCGTCCGAAATCAAACTGAGTGATG
ACAAGCAATGTGACGGCGTATGGTTTCCTCGCACTGACCCTGTCGTCATC
ATGTTGGTAGTAGCTCCATGCGGGGAACGGATCTTGCTCGGAAGACAGAA
GAGATACCCTCCCGGATTGTACTCCTGCCTAGCTGGCTTCATGGAGCATG
GCGAGGGAGTTGAGGATGCGGTTCGAAGAGAGGTGTTCGAAGAGTCTAGT
GTCCGTGTTGGGCGCGTTCGCTTCTTCGCTTCGCAACCATGGCCGTTCCC
GTATTCACTCATGCTCGGATGCGTTGCCCAGGCAGATTCAGAAGAGATTC
TTATTGATGCGGACGAGTTGGAGCATGCAAAATGGTTTTCGCGGGAGGAA
GTTGAAAAGATGATGGCAAGGAACGTGTCAGATGCTCGATCTCCAAAGGT
AGGCGAAACAGATGATGAGTTGTACGCCCCGCCTACGGCTGCTATTGCTG
GAAGACTATTAGAGATATTTACTTTGCAGGAGCCCATCACATTGTTTGCC
ACAAGGGAAACGCAAACTTGTGATACGCAGCTTCGCTTAGGTGCTCTTTG
A
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