Gchil910.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil910.t1
Unique NameGchil910.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1206995..1208506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65093.PCC7418_0393
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Evalue1.04e-36
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1G3KH@1117|Cyanobacteria
EC1.14.13.9
DescriptionCOG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil910Gchil910Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 1206995..1208506 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil910.t1.start1Gchil910.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 1206995..1206997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil910.t1.CDS1Gchil910.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1206995..1208506 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil910.t1.exon1Gchil910.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1206995..1208506 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil910.t1.stop1Gchil910.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 1208504..1208506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil910.t1Gchil910.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 1206995..1208506 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil910.t1 ID=Gchil910.t1|Name=Gchil910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MSDASPPAVAPTPSPPALNSARIVIVGAGLSGYVAAAALAQAGCTNISVY
DAQPDPTVFEPYRAYSLVIYRSGQRLIERLKGFDAIFKEHAVCQHVRVVN
HIAPDASLRVETTRPPAGPVYWLLKTRCLQLLDAFVRERYPAVKLHTGCS
VRDIKFGSQGTSLLVDTPDEKGKSVAVDLLLACDGSNSTIRRLMADNDAA
IRSTNGMKLYSEPSAATGIRHKGLVISARPIISAPGVPAQVAQPSVIYYI
YGQRRGRPAHEAFDMMLLPVSVDSDLPRRAALSVRDGHAILSLRDVSSAR
NLFRANFPQLRVDDMFSDAALQAFVDTEAAAFPPVQRPNSLVGHFDGGGG
VMFVGDAAHSFPPDAAQGVNCAFQDVQHLLEAATADSEAKLRVSDVLDTY
ETRRDREVWTLMQLVGVAAPHSYRHDATKFSRFMLNKRVRGALAAVAPAL
FSSDLDSLMRQGLTYGTVRRRNRLTTVALGALVAAIAAVPLALLRATRSA
TDK*
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spliced messenger RNA

>Gchil910.t1 ID=Gchil910.t1|Name=Gchil910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000017_pilon:1206995..1208506+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACGCTTCTCCACCCGCCGTCGCACCGACGCCATCACCCCCGGC
GTTGAACTCCGCGCGCATCGTCATCGTCGGTGCCGGACTCAGCGGCTATG
TCGCCGCCGCCGCGCTCGCGCAGGCCGGTTGTACTAACATTAGCGTGTAT
GACGCCCAGCCCGATCCCACCGTGTTTGAGCCGTACCGCGCCTATAGTTT
GGTTATTTATCGCTCGGGGCAGCGATTGATTGAGCGTTTGAAAGGTTTTG
ACGCCATCTTCAAGGAACATGCCGTATGTCAGCACGTGCGCGTCGTCAAT
CACATCGCGCCAGACGCTTCGTTGCGCGTCGAAACCACTCGTCCGCCCGC
CGGTCCCGTTTACTGGTTGCTTAAGACGCGCTGCTTGCAGTTGTTGGACG
CGTTTGTGAGGGAGCGATACCCCGCAGTCAAGCTGCATACCGGGTGCTCC
GTGCGCGACATTAAGTTTGGATCGCAGGGCACGTCTCTGCTGGTGGATAC
GCCCGACGAGAAGGGGAAGAGCGTCGCTGTGGATCTGTTGCTGGCGTGTG
ACGGCTCCAACTCCACCATACGACGTCTCATGGCCGACAACGACGCCGCG
ATCCGCAGCACTAACGGCATGAAGCTGTACTCGGAACCCAGCGCCGCCAC
CGGCATCCGCCACAAAGGGCTGGTAATCTCGGCGCGTCCGATTATTTCCG
CGCCTGGCGTCCCCGCGCAAGTGGCACAACCGTCCGTCATCTATTACATC
TACGGCCAACGACGCGGCCGACCAGCGCATGAGGCCTTTGATATGATGTT
ACTCCCCGTCAGTGTTGACAGCGATCTGCCACGTCGCGCAGCGCTTTCCG
TGCGCGACGGACATGCCATTCTTTCCTTGCGCGACGTCAGCAGTGCTCGA
AATCTATTCCGTGCAAACTTCCCGCAGCTCCGCGTGGACGACATGTTCTC
GGACGCGGCGCTTCAGGCGTTTGTTGACACGGAGGCGGCCGCGTTCCCAC
CCGTGCAACGCCCCAACTCGCTGGTGGGTCACTTTGACGGCGGAGGCGGC
GTGATGTTTGTGGGAGATGCGGCACATAGCTTCCCGCCTGACGCGGCGCA
GGGCGTGAATTGCGCGTTCCAGGACGTACAACATCTGTTGGAGGCAGCGA
CGGCCGACTCAGAGGCGAAACTACGCGTTAGCGACGTGCTGGACACTTAT
GAAACGCGGCGCGACCGCGAGGTGTGGACGCTCATGCAGCTGGTGGGCGT
AGCCGCGCCGCACTCGTATCGTCATGACGCCACCAAGTTTTCTCGCTTCA
TGCTTAACAAGCGCGTGCGTGGCGCGTTGGCGGCTGTGGCGCCTGCGCTG
TTCTCCTCCGATCTTGACTCGCTTATGCGACAGGGACTGACTTACGGCAC
GGTGCGTCGGCGTAATCGCCTCACTACCGTTGCGCTGGGCGCGTTGGTGG
CCGCGATCGCTGCTGTGCCGCTCGCGCTGCTGCGCGCAACCCGTAGCGCC
ACCGACAAGTGA
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protein sequence of Gchil910.t1

>Gchil910.t1 ID=Gchil910.t1|Name=Gchil910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MSDASPPAVAPTPSPPALNSARIVIVGAGLSGYVAAAALAQAGCTNISVY
DAQPDPTVFEPYRAYSLVIYRSGQRLIERLKGFDAIFKEHAVCQHVRVVN
HIAPDASLRVETTRPPAGPVYWLLKTRCLQLLDAFVRERYPAVKLHTGCS
VRDIKFGSQGTSLLVDTPDEKGKSVAVDLLLACDGSNSTIRRLMADNDAA
IRSTNGMKLYSEPSAATGIRHKGLVISARPIISAPGVPAQVAQPSVIYYI
YGQRRGRPAHEAFDMMLLPVSVDSDLPRRAALSVRDGHAILSLRDVSSAR
NLFRANFPQLRVDDMFSDAALQAFVDTEAAAFPPVQRPNSLVGHFDGGGG
VMFVGDAAHSFPPDAAQGVNCAFQDVQHLLEAATADSEAKLRVSDVLDTY
ETRRDREVWTLMQLVGVAAPHSYRHDATKFSRFMLNKRVRGALAAVAPAL
FSSDLDSLMRQGLTYGTVRRRNRLTTVALGALVAAIAAVPLALLRATRSA
TDK*
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mRNA from alignment at tig00000017_pilon:1206995..1208506+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil910.t1 ID=Gchil910.t1|Name=Gchil910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000017_pilon:1206995..1208506+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACGCTTCTCCACCCGCCGTCGCACCGACGCCATCACCCCCGGC
GTTGAACTCCGCGCGCATCGTCATCGTCGGTGCCGGACTCAGCGGCTATG
TCGCCGCCGCCGCGCTCGCGCAGGCCGGTTGTACTAACATTAGCGTGTAT
GACGCCCAGCCCGATCCCACCGTGTTTGAGCCGTACCGCGCCTATAGTTT
GGTTATTTATCGCTCGGGGCAGCGATTGATTGAGCGTTTGAAAGGTTTTG
ACGCCATCTTCAAGGAACATGCCGTATGTCAGCACGTGCGCGTCGTCAAT
CACATCGCGCCAGACGCTTCGTTGCGCGTCGAAACCACTCGTCCGCCCGC
CGGTCCCGTTTACTGGTTGCTTAAGACGCGCTGCTTGCAGTTGTTGGACG
CGTTTGTGAGGGAGCGATACCCCGCAGTCAAGCTGCATACCGGGTGCTCC
GTGCGCGACATTAAGTTTGGATCGCAGGGCACGTCTCTGCTGGTGGATAC
GCCCGACGAGAAGGGGAAGAGCGTCGCTGTGGATCTGTTGCTGGCGTGTG
ACGGCTCCAACTCCACCATACGACGTCTCATGGCCGACAACGACGCCGCG
ATCCGCAGCACTAACGGCATGAAGCTGTACTCGGAACCCAGCGCCGCCAC
CGGCATCCGCCACAAAGGGCTGGTAATCTCGGCGCGTCCGATTATTTCCG
CGCCTGGCGTCCCCGCGCAAGTGGCACAACCGTCCGTCATCTATTACATC
TACGGCCAACGACGCGGCCGACCAGCGCATGAGGCCTTTGATATGATGTT
ACTCCCCGTCAGTGTTGACAGCGATCTGCCACGTCGCGCAGCGCTTTCCG
TGCGCGACGGACATGCCATTCTTTCCTTGCGCGACGTCAGCAGTGCTCGA
AATCTATTCCGTGCAAACTTCCCGCAGCTCCGCGTGGACGACATGTTCTC
GGACGCGGCGCTTCAGGCGTTTGTTGACACGGAGGCGGCCGCGTTCCCAC
CCGTGCAACGCCCCAACTCGCTGGTGGGTCACTTTGACGGCGGAGGCGGC
GTGATGTTTGTGGGAGATGCGGCACATAGCTTCCCGCCTGACGCGGCGCA
GGGCGTGAATTGCGCGTTCCAGGACGTACAACATCTGTTGGAGGCAGCGA
CGGCCGACTCAGAGGCGAAACTACGCGTTAGCGACGTGCTGGACACTTAT
GAAACGCGGCGCGACCGCGAGGTGTGGACGCTCATGCAGCTGGTGGGCGT
AGCCGCGCCGCACTCGTATCGTCATGACGCCACCAAGTTTTCTCGCTTCA
TGCTTAACAAGCGCGTGCGTGGCGCGTTGGCGGCTGTGGCGCCTGCGCTG
TTCTCCTCCGATCTTGACTCGCTTATGCGACAGGGACTGACTTACGGCAC
GGTGCGTCGGCGTAATCGCCTCACTACCGTTGCGCTGGGCGCGTTGGTGG
CCGCGATCGCTGCTGTGCCGCTCGCGCTGCTGCGCGCAACCCGTAGCGCC
ACCGACAAGTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:1206995..1208506+

>Gchil910.t1 ID=Gchil910.t1|Name=Gchil910.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000017_pilon:1206995..1208506+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACGCTTCTCCACCCGCCGTCGCACCGACGCCATCACCCCCGGC
GTTGAACTCCGCGCGCATCGTCATCGTCGGTGCCGGACTCAGCGGCTATG
TCGCCGCCGCCGCGCTCGCGCAGGCCGGTTGTACTAACATTAGCGTGTAT
GACGCCCAGCCCGATCCCACCGTGTTTGAGCCGTACCGCGCCTATAGTTT
GGTTATTTATCGCTCGGGGCAGCGATTGATTGAGCGTTTGAAAGGTTTTG
ACGCCATCTTCAAGGAACATGCCGTATGTCAGCACGTGCGCGTCGTCAAT
CACATCGCGCCAGACGCTTCGTTGCGCGTCGAAACCACTCGTCCGCCCGC
CGGTCCCGTTTACTGGTTGCTTAAGACGCGCTGCTTGCAGTTGTTGGACG
CGTTTGTGAGGGAGCGATACCCCGCAGTCAAGCTGCATACCGGGTGCTCC
GTGCGCGACATTAAGTTTGGATCGCAGGGCACGTCTCTGCTGGTGGATAC
GCCCGACGAGAAGGGGAAGAGCGTCGCTGTGGATCTGTTGCTGGCGTGTG
ACGGCTCCAACTCCACCATACGACGTCTCATGGCCGACAACGACGCCGCG
ATCCGCAGCACTAACGGCATGAAGCTGTACTCGGAACCCAGCGCCGCCAC
CGGCATCCGCCACAAAGGGCTGGTAATCTCGGCGCGTCCGATTATTTCCG
CGCCTGGCGTCCCCGCGCAAGTGGCACAACCGTCCGTCATCTATTACATC
TACGGCCAACGACGCGGCCGACCAGCGCATGAGGCCTTTGATATGATGTT
ACTCCCCGTCAGTGTTGACAGCGATCTGCCACGTCGCGCAGCGCTTTCCG
TGCGCGACGGACATGCCATTCTTTCCTTGCGCGACGTCAGCAGTGCTCGA
AATCTATTCCGTGCAAACTTCCCGCAGCTCCGCGTGGACGACATGTTCTC
GGACGCGGCGCTTCAGGCGTTTGTTGACACGGAGGCGGCCGCGTTCCCAC
CCGTGCAACGCCCCAACTCGCTGGTGGGTCACTTTGACGGCGGAGGCGGC
GTGATGTTTGTGGGAGATGCGGCACATAGCTTCCCGCCTGACGCGGCGCA
GGGCGTGAATTGCGCGTTCCAGGACGTACAACATCTGTTGGAGGCAGCGA
CGGCCGACTCAGAGGCGAAACTACGCGTTAGCGACGTGCTGGACACTTAT
GAAACGCGGCGCGACCGCGAGGTGTGGACGCTCATGCAGCTGGTGGGCGT
AGCCGCGCCGCACTCGTATCGTCATGACGCCACCAAGTTTTCTCGCTTCA
TGCTTAACAAGCGCGTGCGTGGCGCGTTGGCGGCTGTGGCGCCTGCGCTG
TTCTCCTCCGATCTTGACTCGCTTATGCGACAGGGACTGACTTACGGCAC
GGTGCGTCGGCGTAATCGCCTCACTACCGTTGCGCTGGGCGCGTTGGTGG
CCGCGATCGCTGCTGTGCCGCTCGCGCTGCTGCGCGCAACCCGTAGCGCC
ACCGACAAGTGA
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