Gchil9098.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9098.t1
Unique Name	Gchil9098.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	742

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1685959..1688184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr45051
PFAMs	Glycos_transf_2
Max annot lvl	2836\|Bacillariophyta
Evalue	1.02e-145
EggNOG OGs	2CXN1@1\|root,2RYKE@2759\|Eukaryota,2XGIH@2836\|Bacillariophyta
Description	Glycosyltransferase like family 2
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9098	Gchil9098	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1685959..1688184 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9098.t1.start1	Gchil9098.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1685959..1685961 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9098.t1.CDS1	Gchil9098.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1685959..1688184 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9098.t1.exon1	Gchil9098.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1685959..1688184 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9098.t1.stop1	Gchil9098.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1688182..1688184 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9098.t1	Gchil9098.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1685959..1688184 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1685959..1688184+
coding sequence from alignment at tig00004370_pilon:1685959..1688184+

mRNA sequence

>Gchil9098.t1 ID=Gchil9098.t1|Name=Gchil9098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=742bp
MALNHVDILKSCTINLGFYGTGTSTLSLGFQNFGFHVHRDRLPLSEESLR
GGLICPEFMIKKWWCEEHGSNYVLDLMKKYDFIFDGWIPLLMFLSNEELF
RFKSRALSEGIKLNYIATNRNVDAYVRSELHHWVNHNLEMKANLTYEEKA
NLSQLIRIRILRHARRVESFQNFNEMQEIKNHLFQCLPLKYMESQWPATL
SSFTWPSEKEWSSALETIGVTNENPSLPVEAILLTFRVEDEMVRERIHSL
LDKVEQDEICRYLLVIALDVDDFNSLATEKLIQSVSSRQRVLSVTKLPNL
NRSKMEPIPLCQIWNSMAEVAWSKGADWTIFLGDDIRLECPFHYRAIYRA
FMDISIRFEYPFGFGCPWLNDVSFPGFPTFPVISKVHRQIFGGLIPYHRR
NEFINQDLDPYLRRLYAKFASAPLLSDVKIENQIGGEKGRLARYKRVPAT
RWRHWVLQDTDPIERYLDSHSRSAKKHPILVDVVIPTYRIDLQYLSRLCA
LQVPNSFRTTFLVIVDNPKRLQDMFATERFKKLDYSTSLHASSAKLERYL
RNISCSEASGIGNNIRVRCNSSNLGALASRNRGIEESSAEYILFLDDDIL
PDPNLLDAYEKAFSSLSESMEAKNLFGMVGLVKFPRRLSMPIKHAAVLSS
QLHSMFEIAQCESHKTPAWGVTANLLTKRLPDLKFNESFAKDWRGRRHRL
LSLSSETFGISIGSQRSSSGSRLLGRITTLLGKAIFFLGIQ*

spliced messenger RNA

>Gchil9098.t1 ID=Gchil9098.t1|Name=Gchil9098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2226bp|location=Sequence derived from alignment at tig00004370_pilon:1685959..1688184+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCAATCATGTAGACATACTCAAGTCTTGCACGATAAATCTCGG
ATTCTACGGCACAGGAACATCAACCTTGAGCCTCGGGTTTCAGAATTTTG
GCTTTCATGTTCATCGGGACAGATTGCCCCTCAGTGAAGAAAGTCTCCGT
GGAGGCCTGATCTGTCCTGAGTTCATGATAAAAAAATGGTGGTGCGAAGA
ACATGGATCAAACTACGTCTTAGATCTGATGAAGAAGTACGACTTTATTT
TTGATGGTTGGATTCCGTTGTTGATGTTTCTTTCCAACGAAGAACTTTTT
CGTTTCAAGTCCAGAGCTTTATCTGAAGGAATCAAATTGAATTACATTGC
TACGAATCGTAATGTTGATGCATATGTCCGCTCTGAACTACATCACTGGG
TGAATCACAATCTTGAAATGAAGGCGAACTTAACTTACGAAGAAAAAGCA
AACCTATCTCAATTGATACGAATTAGAATCTTGAGACACGCTCGTCGAGT
AGAATCGTTTCAGAACTTCAATGAGATGCAGGAAATAAAAAATCACCTCT
TTCAATGCCTTCCTTTGAAATATATGGAATCACAGTGGCCTGCAACTCTT
TCATCTTTTACGTGGCCATCAGAAAAAGAATGGAGTAGTGCATTGGAAAC
GATCGGCGTCACCAACGAGAACCCTTCTCTTCCCGTGGAGGCCATTCTTC
TTACGTTTCGGGTAGAAGACGAGATGGTTCGTGAGAGAATACATAGCCTT
CTAGATAAGGTTGAACAGGACGAAATCTGTCGGTATCTACTAGTGATCGC
GCTGGACGTTGATGACTTCAATTCACTCGCGACAGAAAAGTTGATCCAGA
GTGTTTCCAGTCGACAACGAGTACTGAGCGTGACGAAGTTGCCAAATCTA
AACAGAAGCAAAATGGAACCAATCCCGCTTTGTCAGATATGGAACAGCAT
GGCTGAAGTTGCGTGGTCAAAAGGTGCAGATTGGACTATTTTTCTTGGTG
ATGACATTCGACTGGAATGTCCGTTCCACTACAGAGCCATTTACCGTGCA
TTCATGGATATCAGTATTCGTTTTGAATATCCCTTTGGCTTTGGATGTCC
CTGGCTTAATGATGTAAGCTTTCCGGGATTTCCAACTTTCCCAGTCATTT
CAAAGGTACATCGTCAGATTTTTGGAGGACTGATTCCGTATCATCGGAGA
AATGAATTCATCAATCAAGATTTGGATCCGTACTTACGCAGACTGTACGC
AAAATTTGCATCAGCACCACTGCTTTCAGACGTGAAGATTGAAAATCAAA
TTGGTGGTGAGAAAGGGAGACTTGCCAGATACAAAAGAGTGCCCGCCACG
AGATGGCGACATTGGGTTCTACAAGATACAGATCCAATAGAACGATACCT
CGACTCACATTCAAGGAGTGCGAAGAAACATCCGATTCTGGTTGACGTTG
TAATACCCACGTATCGGATCGATCTACAGTACCTAAGCCGTCTTTGTGCA
CTTCAGGTGCCCAATTCCTTCCGAACTACTTTCCTGGTAATCGTTGACAA
TCCAAAGCGGCTGCAAGATATGTTTGCAACAGAGCGTTTTAAGAAGCTCG
ATTACTCTACTTCATTGCATGCTTCCTCGGCAAAACTTGAACGGTACCTA
CGAAACATTTCTTGTTCAGAAGCCTCCGGCATCGGAAACAACATAAGAGT
TCGCTGCAACAGTTCTAATCTCGGTGCTTTAGCCAGTCGAAATAGAGGAA
TAGAAGAAAGCTCCGCTGAGTACATTCTGTTTCTTGATGACGATATCCTT
CCTGACCCAAATCTTCTGGATGCATATGAAAAAGCATTTTCTTCACTTTC
TGAGTCCATGGAAGCAAAGAATTTGTTTGGTATGGTTGGGCTTGTGAAAT
TCCCGCGACGGTTGTCGATGCCAATCAAACATGCTGCGGTTTTATCAAGT
CAATTGCACTCTATGTTTGAGATTGCCCAATGTGAATCCCACAAAACTCC
AGCTTGGGGGGTAACTGCGAACTTGCTGACAAAGCGCCTCCCGGATTTAA
AGTTCAATGAGTCATTTGCAAAAGACTGGAGGGGGAGAAGACATCGATTA
TTGTCTCTCTCTTCAGAGACATTCGGGATTTCTATTGGCAGTCAAAGAAG
CAGTAGCGGTTCACGACTTTTGGGAAGGATCACCACTCTACTTGGCAAAG
CGATTTTTTTCTTGGGCATACAGTGA

protein sequence of Gchil9098.t1

>Gchil9098.t1 ID=Gchil9098.t1|Name=Gchil9098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=742bp
MALNHVDILKSCTINLGFYGTGTSTLSLGFQNFGFHVHRDRLPLSEESLR
GGLICPEFMIKKWWCEEHGSNYVLDLMKKYDFIFDGWIPLLMFLSNEELF
RFKSRALSEGIKLNYIATNRNVDAYVRSELHHWVNHNLEMKANLTYEEKA
NLSQLIRIRILRHARRVESFQNFNEMQEIKNHLFQCLPLKYMESQWPATL
SSFTWPSEKEWSSALETIGVTNENPSLPVEAILLTFRVEDEMVRERIHSL
LDKVEQDEICRYLLVIALDVDDFNSLATEKLIQSVSSRQRVLSVTKLPNL
NRSKMEPIPLCQIWNSMAEVAWSKGADWTIFLGDDIRLECPFHYRAIYRA
FMDISIRFEYPFGFGCPWLNDVSFPGFPTFPVISKVHRQIFGGLIPYHRR
NEFINQDLDPYLRRLYAKFASAPLLSDVKIENQIGGEKGRLARYKRVPAT
RWRHWVLQDTDPIERYLDSHSRSAKKHPILVDVVIPTYRIDLQYLSRLCA
LQVPNSFRTTFLVIVDNPKRLQDMFATERFKKLDYSTSLHASSAKLERYL
RNISCSEASGIGNNIRVRCNSSNLGALASRNRGIEESSAEYILFLDDDIL
PDPNLLDAYEKAFSSLSESMEAKNLFGMVGLVKFPRRLSMPIKHAAVLSS
QLHSMFEIAQCESHKTPAWGVTANLLTKRLPDLKFNESFAKDWRGRRHRL
LSLSSETFGISIGSQRSSSGSRLLGRITTLLGKAIFFLGIQ*

mRNA from alignment at tig00004370_pilon:1685959..1688184+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9098.t1 ID=Gchil9098.t1|Name=Gchil9098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2226bp|location=Sequence derived from alignment at tig00004370_pilon:1685959..1688184+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTCAATCATGTAGACATACTCAAGTCTTGCACGATAAATCTCGG
ATTCTACGGCACAGGAACATCAACCTTGAGCCTCGGGTTTCAGAATTTTG
GCTTTCATGTTCATCGGGACAGATTGCCCCTCAGTGAAGAAAGTCTCCGT
GGAGGCCTGATCTGTCCTGAGTTCATGATAAAAAAATGGTGGTGCGAAGA
ACATGGATCAAACTACGTCTTAGATCTGATGAAGAAGTACGACTTTATTT
TTGATGGTTGGATTCCGTTGTTGATGTTTCTTTCCAACGAAGAACTTTTT
CGTTTCAAGTCCAGAGCTTTATCTGAAGGAATCAAATTGAATTACATTGC
TACGAATCGTAATGTTGATGCATATGTCCGCTCTGAACTACATCACTGGG
TGAATCACAATCTTGAAATGAAGGCGAACTTAACTTACGAAGAAAAAGCA
AACCTATCTCAATTGATACGAATTAGAATCTTGAGACACGCTCGTCGAGT
AGAATCGTTTCAGAACTTCAATGAGATGCAGGAAATAAAAAATCACCTCT
TTCAATGCCTTCCTTTGAAATATATGGAATCACAGTGGCCTGCAACTCTT
TCATCTTTTACGTGGCCATCAGAAAAAGAATGGAGTAGTGCATTGGAAAC
GATCGGCGTCACCAACGAGAACCCTTCTCTTCCCGTGGAGGCCATTCTTC
TTACGTTTCGGGTAGAAGACGAGATGGTTCGTGAGAGAATACATAGCCTT
CTAGATAAGGTTGAACAGGACGAAATCTGTCGGTATCTACTAGTGATCGC
GCTGGACGTTGATGACTTCAATTCACTCGCGACAGAAAAGTTGATCCAGA
GTGTTTCCAGTCGACAACGAGTACTGAGCGTGACGAAGTTGCCAAATCTA
AACAGAAGCAAAATGGAACCAATCCCGCTTTGTCAGATATGGAACAGCAT
GGCTGAAGTTGCGTGGTCAAAAGGTGCAGATTGGACTATTTTTCTTGGTG
ATGACATTCGACTGGAATGTCCGTTCCACTACAGAGCCATTTACCGTGCA
TTCATGGATATCAGTATTCGTTTTGAATATCCCTTTGGCTTTGGATGTCC
CTGGCTTAATGATGTAAGCTTTCCGGGATTTCCAACTTTCCCAGTCATTT
CAAAGGTACATCGTCAGATTTTTGGAGGACTGATTCCGTATCATCGGAGA
AATGAATTCATCAATCAAGATTTGGATCCGTACTTACGCAGACTGTACGC
AAAATTTGCATCAGCACCACTGCTTTCAGACGTGAAGATTGAAAATCAAA
TTGGTGGTGAGAAAGGGAGACTTGCCAGATACAAAAGAGTGCCCGCCACG
AGATGGCGACATTGGGTTCTACAAGATACAGATCCAATAGAACGATACCT
CGACTCACATTCAAGGAGTGCGAAGAAACATCCGATTCTGGTTGACGTTG
TAATACCCACGTATCGGATCGATCTACAGTACCTAAGCCGTCTTTGTGCA
CTTCAGGTGCCCAATTCCTTCCGAACTACTTTCCTGGTAATCGTTGACAA
TCCAAAGCGGCTGCAAGATATGTTTGCAACAGAGCGTTTTAAGAAGCTCG
ATTACTCTACTTCATTGCATGCTTCCTCGGCAAAACTTGAACGGTACCTA
CGAAACATTTCTTGTTCAGAAGCCTCCGGCATCGGAAACAACATAAGAGT
TCGCTGCAACAGTTCTAATCTCGGTGCTTTAGCCAGTCGAAATAGAGGAA
TAGAAGAAAGCTCCGCTGAGTACATTCTGTTTCTTGATGACGATATCCTT
CCTGACCCAAATCTTCTGGATGCATATGAAAAAGCATTTTCTTCACTTTC
TGAGTCCATGGAAGCAAAGAATTTGTTTGGTATGGTTGGGCTTGTGAAAT
TCCCGCGACGGTTGTCGATGCCAATCAAACATGCTGCGGTTTTATCAAGT
CAATTGCACTCTATGTTTGAGATTGCCCAATGTGAATCCCACAAAACTCC
AGCTTGGGGGGTAACTGCGAACTTGCTGACAAAGCGCCTCCCGGATTTAA
AGTTCAATGAGTCATTTGCAAAAGACTGGAGGGGGAGAAGACATCGATTA
TTGTCTCTCTCTTCAGAGACATTCGGGATTTCTATTGGCAGTCAAAGAAG
CAGTAGCGGTTCACGACTTTTGGGAAGGATCACCACTCTACTTGGCAAAG
CGATTTTTTTCTTGGGCATACAGTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:1685959..1688184+

>Gchil9098.t1 ID=Gchil9098.t1|Name=Gchil9098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2226bp|location=Sequence derived from alignment at tig00004370_pilon:1685959..1688184+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTCAATCATGTAGACATACTCAAGTCTTGCACGATAAATCTCGG
ATTCTACGGCACAGGAACATCAACCTTGAGCCTCGGGTTTCAGAATTTTG
GCTTTCATGTTCATCGGGACAGATTGCCCCTCAGTGAAGAAAGTCTCCGT
GGAGGCCTGATCTGTCCTGAGTTCATGATAAAAAAATGGTGGTGCGAAGA
ACATGGATCAAACTACGTCTTAGATCTGATGAAGAAGTACGACTTTATTT
TTGATGGTTGGATTCCGTTGTTGATGTTTCTTTCCAACGAAGAACTTTTT
CGTTTCAAGTCCAGAGCTTTATCTGAAGGAATCAAATTGAATTACATTGC
TACGAATCGTAATGTTGATGCATATGTCCGCTCTGAACTACATCACTGGG
TGAATCACAATCTTGAAATGAAGGCGAACTTAACTTACGAAGAAAAAGCA
AACCTATCTCAATTGATACGAATTAGAATCTTGAGACACGCTCGTCGAGT
AGAATCGTTTCAGAACTTCAATGAGATGCAGGAAATAAAAAATCACCTCT
TTCAATGCCTTCCTTTGAAATATATGGAATCACAGTGGCCTGCAACTCTT
TCATCTTTTACGTGGCCATCAGAAAAAGAATGGAGTAGTGCATTGGAAAC
GATCGGCGTCACCAACGAGAACCCTTCTCTTCCCGTGGAGGCCATTCTTC
TTACGTTTCGGGTAGAAGACGAGATGGTTCGTGAGAGAATACATAGCCTT
CTAGATAAGGTTGAACAGGACGAAATCTGTCGGTATCTACTAGTGATCGC
GCTGGACGTTGATGACTTCAATTCACTCGCGACAGAAAAGTTGATCCAGA
GTGTTTCCAGTCGACAACGAGTACTGAGCGTGACGAAGTTGCCAAATCTA
AACAGAAGCAAAATGGAACCAATCCCGCTTTGTCAGATATGGAACAGCAT
GGCTGAAGTTGCGTGGTCAAAAGGTGCAGATTGGACTATTTTTCTTGGTG
ATGACATTCGACTGGAATGTCCGTTCCACTACAGAGCCATTTACCGTGCA
TTCATGGATATCAGTATTCGTTTTGAATATCCCTTTGGCTTTGGATGTCC
CTGGCTTAATGATGTAAGCTTTCCGGGATTTCCAACTTTCCCAGTCATTT
CAAAGGTACATCGTCAGATTTTTGGAGGACTGATTCCGTATCATCGGAGA
AATGAATTCATCAATCAAGATTTGGATCCGTACTTACGCAGACTGTACGC
AAAATTTGCATCAGCACCACTGCTTTCAGACGTGAAGATTGAAAATCAAA
TTGGTGGTGAGAAAGGGAGACTTGCCAGATACAAAAGAGTGCCCGCCACG
AGATGGCGACATTGGGTTCTACAAGATACAGATCCAATAGAACGATACCT
CGACTCACATTCAAGGAGTGCGAAGAAACATCCGATTCTGGTTGACGTTG
TAATACCCACGTATCGGATCGATCTACAGTACCTAAGCCGTCTTTGTGCA
CTTCAGGTGCCCAATTCCTTCCGAACTACTTTCCTGGTAATCGTTGACAA
TCCAAAGCGGCTGCAAGATATGTTTGCAACAGAGCGTTTTAAGAAGCTCG
ATTACTCTACTTCATTGCATGCTTCCTCGGCAAAACTTGAACGGTACCTA
CGAAACATTTCTTGTTCAGAAGCCTCCGGCATCGGAAACAACATAAGAGT
TCGCTGCAACAGTTCTAATCTCGGTGCTTTAGCCAGTCGAAATAGAGGAA
TAGAAGAAAGCTCCGCTGAGTACATTCTGTTTCTTGATGACGATATCCTT
CCTGACCCAAATCTTCTGGATGCATATGAAAAAGCATTTTCTTCACTTTC
TGAGTCCATGGAAGCAAAGAATTTGTTTGGTATGGTTGGGCTTGTGAAAT
TCCCGCGACGGTTGTCGATGCCAATCAAACATGCTGCGGTTTTATCAAGT
CAATTGCACTCTATGTTTGAGATTGCCCAATGTGAATCCCACAAAACTCC
AGCTTGGGGGGTAACTGCGAACTTGCTGACAAAGCGCCTCCCGGATTTAA
AGTTCAATGAGTCATTTGCAAAAGACTGGAGGGGGAGAAGACATCGATTA
TTGTCTCTCTCTTCAGAGACATTCGGGATTTCTATTGGCAGTCAAAGAAG
CAGTAGCGGTTCACGACTTTTGGGAAGGATCACCACTCTACTTGGCAAAG
CGATTTTTTTCTTGGGCATACAGTGA