Gchil9081.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9081.t1
Unique NameGchil9081.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1425984..1427129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005851509.1
PFAMsNCBP3
Max annot lvl3041|Chlorophyta
Evalue1.01e-23
EggNOG OGs2CMTT@1|root,2QRX4@2759|Eukaryota,37X1Q@33090|Viridiplantae,34IMZ@3041|Chlorophyta
DescriptionNuclear cap-binding protein subunit 3
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9081Gchil9081Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1425984..1427129 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9081.t1.stop1Gchil9081.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1425984..1425986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9081.t1.CDS1Gchil9081.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1425984..1427129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9081.t1.exon1Gchil9081.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1425984..1427129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9081.t1.start1Gchil9081.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1427127..1427129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9081.t1Gchil9081.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1425984..1427129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9081.t1 ID=Gchil9081.t1|Name=Gchil9081.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=382bp
MAQTSSPVQASNPPKLEPQVSTEVPLMGDSKPEASTTINPITFDLAPTPT
ALSRLQSQMNQTSEKFAARAARFGAADLKTRATELDVLGARRAHSRQGFA
SGFDPQAPDQKSRREMRAKRFGEQISFDAEQAARDARTHRFGGKAHELVG
AAHVCNDALERRRDVAVGEVARPEVLHVFGVDLLSTGEILRHFKEYGPSW
CEWLNDSSCNIAFEDEHTMRRALRGLTEHGKQLVMDQIVENAPEDKMDDG
EGAGMSLAVAGEGTLTEELTWRGGKPFEQGDKLIPIWIRQATEKDKRPEL
PNPKSKWSRNIHYKRRLTSNRRGNDAKHSRRQRRKDVDAPDVQRQNRNGP
ALGVHQDRKVAILKAQTKKVTKLDLDRALGS*
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spliced messenger RNA

>Gchil9081.t1 ID=Gchil9081.t1|Name=Gchil9081.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004370_pilon:1425984..1427129- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAGACGTCTTCTCCCGTTCAAGCCTCAAACCCACCAAAACTTGA
GCCTCAAGTAAGCACGGAAGTCCCACTCATGGGCGACTCGAAACCCGAGG
CCTCCACCACCATCAACCCCATCACCTTCGACCTAGCGCCGACTCCAACG
GCTCTGTCCCGTCTACAAAGCCAAATGAACCAAACCTCGGAGAAGTTCGC
AGCCCGAGCCGCGCGTTTCGGCGCCGCAGACCTCAAGACCCGCGCAACAG
AACTTGACGTACTAGGGGCACGTCGCGCGCACTCACGTCAAGGGTTCGCC
TCTGGCTTTGATCCGCAAGCGCCCGATCAGAAAAGCAGACGAGAGATGCG
AGCGAAACGCTTTGGGGAACAGATTTCCTTCGATGCTGAACAGGCCGCAC
GTGATGCACGCACCCATCGATTCGGCGGTAAGGCGCATGAGCTCGTCGGA
GCGGCTCATGTTTGTAATGATGCACTCGAGCGTCGTCGCGATGTTGCCGT
CGGTGAAGTTGCTCGTCCGGAAGTGCTTCATGTTTTTGGCGTTGACTTGC
TCAGCACTGGTGAAATCCTTCGACACTTTAAAGAATATGGCCCGTCATGG
TGTGAGTGGCTTAATGACTCTAGTTGTAACATTGCTTTCGAGGACGAACA
TACGATGCGAAGGGCTTTACGCGGTCTCACCGAGCATGGTAAACAGTTGG
TTATGGATCAAATTGTTGAAAATGCCCCGGAAGATAAAATGGATGATGGC
GAGGGTGCGGGTATGAGCTTAGCAGTTGCCGGGGAGGGTACCCTTACCGA
AGAACTTACATGGCGTGGTGGGAAACCTTTCGAACAGGGTGATAAGCTTA
TTCCCATCTGGATTCGACAGGCTACAGAGAAGGACAAGAGGCCAGAATTA
CCAAACCCGAAGAGCAAATGGAGCCGTAACATCCACTACAAAAGGCGACT
CACTTCCAATCGACGCGGAAATGACGCCAAGCACAGTCGCCGACAGCGAC
GAAAGGATGTAGATGCGCCGGATGTACAGAGACAGAATCGAAATGGCCCA
GCACTGGGTGTTCATCAAGATCGTAAGGTGGCCATTCTCAAGGCTCAAAC
AAAGAAGGTGACCAAGCTGGATTTGGATCGCGCCTTGGGCTCGTAA
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protein sequence of Gchil9081.t1

>Gchil9081.t1 ID=Gchil9081.t1|Name=Gchil9081.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=382bp
MAQTSSPVQASNPPKLEPQVSTEVPLMGDSKPEASTTINPITFDLAPTPT
ALSRLQSQMNQTSEKFAARAARFGAADLKTRATELDVLGARRAHSRQGFA
SGFDPQAPDQKSRREMRAKRFGEQISFDAEQAARDARTHRFGGKAHELVG
AAHVCNDALERRRDVAVGEVARPEVLHVFGVDLLSTGEILRHFKEYGPSW
CEWLNDSSCNIAFEDEHTMRRALRGLTEHGKQLVMDQIVENAPEDKMDDG
EGAGMSLAVAGEGTLTEELTWRGGKPFEQGDKLIPIWIRQATEKDKRPEL
PNPKSKWSRNIHYKRRLTSNRRGNDAKHSRRQRRKDVDAPDVQRQNRNGP
ALGVHQDRKVAILKAQTKKVTKLDLDRALGS*
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mRNA from alignment at tig00004370_pilon:1425984..1427129-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9081.t1 ID=Gchil9081.t1|Name=Gchil9081.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004370_pilon:1425984..1427129- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCAGACGTCTTCTCCCGTTCAAGCCTCAAACCCACCAAAACTTGA
GCCTCAAGTAAGCACGGAAGTCCCACTCATGGGCGACTCGAAACCCGAGG
CCTCCACCACCATCAACCCCATCACCTTCGACCTAGCGCCGACTCCAACG
GCTCTGTCCCGTCTACAAAGCCAAATGAACCAAACCTCGGAGAAGTTCGC
AGCCCGAGCCGCGCGTTTCGGCGCCGCAGACCTCAAGACCCGCGCAACAG
AACTTGACGTACTAGGGGCACGTCGCGCGCACTCACGTCAAGGGTTCGCC
TCTGGCTTTGATCCGCAAGCGCCCGATCAGAAAAGCAGACGAGAGATGCG
AGCGAAACGCTTTGGGGAACAGATTTCCTTCGATGCTGAACAGGCCGCAC
GTGATGCACGCACCCATCGATTCGGCGGTAAGGCGCATGAGCTCGTCGGA
GCGGCTCATGTTTGTAATGATGCACTCGAGCGTCGTCGCGATGTTGCCGT
CGGTGAAGTTGCTCGTCCGGAAGTGCTTCATGTTTTTGGCGTTGACTTGC
TCAGCACTGGTGAAATCCTTCGACACTTTAAAGAATATGGCCCGTCATGG
TGTGAGTGGCTTAATGACTCTAGTTGTAACATTGCTTTCGAGGACGAACA
TACGATGCGAAGGGCTTTACGCGGTCTCACCGAGCATGGTAAACAGTTGG
TTATGGATCAAATTGTTGAAAATGCCCCGGAAGATAAAATGGATGATGGC
GAGGGTGCGGGTATGAGCTTAGCAGTTGCCGGGGAGGGTACCCTTACCGA
AGAACTTACATGGCGTGGTGGGAAACCTTTCGAACAGGGTGATAAGCTTA
TTCCCATCTGGATTCGACAGGCTACAGAGAAGGACAAGAGGCCAGAATTA
CCAAACCCGAAGAGCAAATGGAGCCGTAACATCCACTACAAAAGGCGACT
CACTTCCAATCGACGCGGAAATGACGCCAAGCACAGTCGCCGACAGCGAC
GAAAGGATGTAGATGCGCCGGATGTACAGAGACAGAATCGAAATGGCCCA
GCACTGGGTGTTCATCAAGATCGTAAGGTGGCCATTCTCAAGGCTCAAAC
AAAGAAGGTGACCAAGCTGGATTTGGATCGCGCCTTGGGCTCGTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1425984..1427129-

>Gchil9081.t1 ID=Gchil9081.t1|Name=Gchil9081.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00004370_pilon:1425984..1427129- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCAGACGTCTTCTCCCGTTCAAGCCTCAAACCCACCAAAACTTGA
GCCTCAAGTAAGCACGGAAGTCCCACTCATGGGCGACTCGAAACCCGAGG
CCTCCACCACCATCAACCCCATCACCTTCGACCTAGCGCCGACTCCAACG
GCTCTGTCCCGTCTACAAAGCCAAATGAACCAAACCTCGGAGAAGTTCGC
AGCCCGAGCCGCGCGTTTCGGCGCCGCAGACCTCAAGACCCGCGCAACAG
AACTTGACGTACTAGGGGCACGTCGCGCGCACTCACGTCAAGGGTTCGCC
TCTGGCTTTGATCCGCAAGCGCCCGATCAGAAAAGCAGACGAGAGATGCG
AGCGAAACGCTTTGGGGAACAGATTTCCTTCGATGCTGAACAGGCCGCAC
GTGATGCACGCACCCATCGATTCGGCGGTAAGGCGCATGAGCTCGTCGGA
GCGGCTCATGTTTGTAATGATGCACTCGAGCGTCGTCGCGATGTTGCCGT
CGGTGAAGTTGCTCGTCCGGAAGTGCTTCATGTTTTTGGCGTTGACTTGC
TCAGCACTGGTGAAATCCTTCGACACTTTAAAGAATATGGCCCGTCATGG
TGTGAGTGGCTTAATGACTCTAGTTGTAACATTGCTTTCGAGGACGAACA
TACGATGCGAAGGGCTTTACGCGGTCTCACCGAGCATGGTAAACAGTTGG
TTATGGATCAAATTGTTGAAAATGCCCCGGAAGATAAAATGGATGATGGC
GAGGGTGCGGGTATGAGCTTAGCAGTTGCCGGGGAGGGTACCCTTACCGA
AGAACTTACATGGCGTGGTGGGAAACCTTTCGAACAGGGTGATAAGCTTA
TTCCCATCTGGATTCGACAGGCTACAGAGAAGGACAAGAGGCCAGAATTA
CCAAACCCGAAGAGCAAATGGAGCCGTAACATCCACTACAAAAGGCGACT
CACTTCCAATCGACGCGGAAATGACGCCAAGCACAGTCGCCGACAGCGAC
GAAAGGATGTAGATGCGCCGGATGTACAGAGACAGAATCGAAATGGCCCA
GCACTGGGTGTTCATCAAGATCGTAAGGTGGCCATTCTCAAGGCTCAAAC
AAAGAAGGTGACCAAGCTGGATTTGGATCGCGCCTTGGGCTCGTAA
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