Gchil9071.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9071.t1
Unique NameGchil9071.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1284282..1284687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9071Gchil9071Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1284282..1284687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9071.t1Gchil9071.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1284282..1284687 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9071.t1.stop1Gchil9071.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1284282..1284284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9071.t1.CDS1Gchil9071.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1284282..1284365 -
Gchil9071.t1.CDS2Gchil9071.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1284475..1284687 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9071.t1.exon1Gchil9071.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1284282..1284365 -
Gchil9071.t1.exon2Gchil9071.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1284475..1284687 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9071.t1.intron1Gchil9071.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1284366..1284474 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9071.t1.start1Gchil9071.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1284685..1284687 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9071.t1 ID=Gchil9071.t1|Name=Gchil9071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=99bp
MPDVVVAALQTPHIRIRIAAALQVFNIACSVSYACCGRIPKMLPISRRSE
NPCKEGKEHLTVSSLERWLSSMSLHEIGAMRVGTIVLQNHRKQNKDGL*
back to top

spliced messenger RNA

>Gchil9071.t1 ID=Gchil9071.t1|Name=Gchil9071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00004370_pilon:1284282..1284687- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGATGTGGTTGTTGCGGCTCTCCAGACCCCTCATATCCGTATTCG
CATCGCTGCTGCATTGCAAGTTTTCAACATCGCATGCTCGGTTTCCTACG
CCTGCTGTGGCAGAATACCGAAAATGCTTCCCATTTCCCGACGATCAGAG
AACCCATGCAAAGAGGGGAAGGAGCACTTGACCGTTTCCAGCTTGGAGCG
TTGGCTGTCATCTATGTCTCTTCATGAGATCGGCGCAATGAGAGTTGGCA
CAATAGTGCTTCAGAACCACAGGAAACAAAACAAGGATGGTTTGTAA
back to top

protein sequence of Gchil9071.t1

>Gchil9071.t1 ID=Gchil9071.t1|Name=Gchil9071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=99bp
MPDVVVAALQTPHIRIRIAAALQVFNIACSVSYACCGRIPKMLPISRRSE
NPCKEGKEHLTVSSLERWLSSMSLHEIGAMRVGTIVLQNHRKQNKDGL*
back to top

mRNA from alignment at tig00004370_pilon:1284282..1284687-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9071.t1 ID=Gchil9071.t1|Name=Gchil9071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=406bp|location=Sequence derived from alignment at tig00004370_pilon:1284282..1284687- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGATGTGGTTGTTGCGGCTCTCCAGACCCCTCATATCCGTATTCG
CATCGCTGCTGCATTGCAAGTTTTCAACATCGCATGCTCGGTTTCCTACG
CCTGCTGTGGCAGAATACCGAAAATGCTTCCCATTTCCCGACGATCAGAG
AACCCATGCAAAGAGGGGAAGGAGCACTTGACCGTTTCCAGCTTGGAGCG
TTGGCTGTCATCTGTACGTTAATATTTTTAAATTCACCGTCAACTTCACA
TCACTCTCAGGAATTTGAAGCAGCACGATAACCGTAATCCACTTTCATCC
AAAATTGTGAGACTGTGAGCAGATGTCTCTTCATGAGATCGGCGCAATGA
GAGTTGGCACAATAGTGCTTCAGAACCACAGGAAACAAAACAAGGATGGT
TTGTAA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:1284282..1284687-

>Gchil9071.t1 ID=Gchil9071.t1|Name=Gchil9071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=297bp|location=Sequence derived from alignment at tig00004370_pilon:1284282..1284687- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGATGTGGTTGTTGCGGCTCTCCAGACCCCTCATATCCGTATTCG
CATCGCTGCTGCATTGCAAGTTTTCAACATCGCATGCTCGGTTTCCTACG
CCTGCTGTGGCAGAATACCGAAAATGCTTCCCATTTCCCGACGATCAGAG
AACCCATGCAAAGAGGGGAAGGAGCACTTGACCGTTTCCAGCTTGGAGCG
TTGGCTGTCATCTATGTCTCTTCATGAGATCGGCGCAATGAGAGTTGGCA
CAATAGTGCTTCAGAACCACAGGAAACAAAACAAGGATGGTTTGTAA
back to top