Gchil9044.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9044.t1
Unique NameGchil9044.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1110124..1111572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc03g078640.1.1
Max annot lvl35493|Streptophyta
Evalue7.77e-05
EggNOG OGs2CKD8@1|root,2QVCG@2759|Eukaryota,37N1J@33090|Viridiplantae,3GAV4@35493|Streptophyta,44MVX@71274|asterids
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9044Gchil9044Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1110124..1111572 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9044.t1.stop1Gchil9044.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1110124..1110126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9044.t1.CDS1Gchil9044.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1110124..1111572 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9044.t1.exon1Gchil9044.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1110124..1111572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9044.t1.start1Gchil9044.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1111570..1111572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9044.t1Gchil9044.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1110124..1111572 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9044.t1 ID=Gchil9044.t1|Name=Gchil9044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MRPTTVLFLLLSAFLGAALADYGREEHDLGPPEEDFALDPEVIGDDASIP
ADDEALASVEKESNDLAAKLKEMELLKSRIKTKNELLKRVQNLRSTLDNT
EKLEQEVKEEESKVEESLNLAVKKKNDTFDEKEHIAVERRDIERRTEEAH
EEEKKYAAELLHVEENRKKKEAEEKELEDEHKRLMEEIQVIVERFRENGF
HAWLEQNVKDFPPVIRETILKSTSVLYPVFDGIEDAAELNERLTAETTEA
ITQYLPAIKSSPFYTGLIFYVILLFPIVAVMWLVSKVRARLSMLTIEHYL
IAMNMYFGILSLACAFMTLIGKTDILIVFRHRSQRVAEAFMILHGFLFIV
HLALHGITAYVSGSRKDFAQYIGISCVGLHFFLNAYKRTILDQDPNIGAP
AYAVYAAFFLYTLYDRGLHILEAAVNEKKNNAAAFRTFPGSSSQSLPIAP
NPTGKGDTTVYFAGLPVFNGPGHASLDDAKNI*
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spliced messenger RNA

>Gchil9044.t1 ID=Gchil9044.t1|Name=Gchil9044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004370_pilon:1110124..1111572- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCCACTACAGTTCTTTTCTTGCTGCTTTCTGCATTTTTGGGAGC
TGCCCTGGCTGACTACGGTCGTGAAGAACACGACTTAGGGCCTCCAGAGG
AAGACTTCGCCTTAGATCCGGAGGTTATCGGAGATGACGCTAGCATACCA
GCGGATGACGAAGCTCTGGCTAGTGTCGAAAAAGAGAGTAATGACCTGGC
AGCTAAATTGAAGGAAATGGAACTACTGAAGTCTCGAATCAAGACAAAGA
ATGAACTTCTCAAGCGCGTGCAGAACTTACGAAGCACTCTTGATAACACC
GAAAAACTTGAACAAGAAGTAAAGGAGGAAGAATCAAAGGTTGAGGAAAG
TTTAAACCTCGCCGTGAAGAAGAAGAACGACACTTTCGATGAAAAAGAGC
ACATCGCTGTCGAGAGGAGGGATATTGAGCGGCGTACAGAGGAAGCTCAC
GAAGAGGAAAAGAAGTACGCCGCAGAGCTTCTTCACGTTGAAGAAAACAG
AAAAAAAAAAGAAGCAGAAGAAAAGGAGTTGGAAGACGAACATAAGCGTT
TAATGGAGGAGATACAAGTTATTGTTGAACGATTCAGAGAAAATGGTTTC
CATGCTTGGTTGGAACAGAATGTGAAAGACTTCCCTCCTGTGATTCGGGA
AACAATCCTTAAGTCAACGTCTGTACTTTATCCTGTTTTTGACGGCATTG
AAGATGCTGCAGAATTGAACGAACGCCTCACCGCAGAGACGACGGAGGCC
ATCACCCAGTACCTTCCGGCTATCAAAAGCAGCCCATTTTACACTGGTCT
TATCTTCTACGTAATACTATTGTTTCCTATAGTCGCCGTGATGTGGCTTG
TATCCAAAGTTCGAGCACGGCTTTCAATGCTCACAATTGAGCATTATCTT
ATCGCCATGAACATGTACTTTGGTATTTTGAGTCTTGCTTGCGCTTTCAT
GACGCTCATTGGGAAGACAGACATCCTTATTGTATTCAGACATCGTTCCC
AACGCGTCGCCGAAGCTTTTATGATTCTTCATGGCTTTTTGTTCATTGTC
CACCTCGCTTTACATGGTATAACAGCCTACGTATCTGGATCACGAAAAGA
TTTCGCCCAATACATTGGAATCTCATGCGTTGGACTTCACTTTTTCTTGA
ATGCTTACAAGCGCACCATCCTTGACCAAGATCCTAACATAGGGGCCCCC
GCGTATGCCGTGTATGCAGCGTTCTTCTTGTACACCTTATACGATAGAGG
ACTGCATATTCTCGAAGCTGCTGTTAATGAAAAAAAGAACAACGCGGCAG
CTTTTCGAACCTTCCCTGGCTCCTCTTCACAAAGCCTCCCAATAGCTCCA
AACCCTACTGGAAAGGGAGATACAACGGTCTACTTCGCTGGTCTGCCTGT
TTTTAATGGCCCTGGTCACGCATCATTGGACGACGCAAAGAATATTTGA
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protein sequence of Gchil9044.t1

>Gchil9044.t1 ID=Gchil9044.t1|Name=Gchil9044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MRPTTVLFLLLSAFLGAALADYGREEHDLGPPEEDFALDPEVIGDDASIP
ADDEALASVEKESNDLAAKLKEMELLKSRIKTKNELLKRVQNLRSTLDNT
EKLEQEVKEEESKVEESLNLAVKKKNDTFDEKEHIAVERRDIERRTEEAH
EEEKKYAAELLHVEENRKKKEAEEKELEDEHKRLMEEIQVIVERFRENGF
HAWLEQNVKDFPPVIRETILKSTSVLYPVFDGIEDAAELNERLTAETTEA
ITQYLPAIKSSPFYTGLIFYVILLFPIVAVMWLVSKVRARLSMLTIEHYL
IAMNMYFGILSLACAFMTLIGKTDILIVFRHRSQRVAEAFMILHGFLFIV
HLALHGITAYVSGSRKDFAQYIGISCVGLHFFLNAYKRTILDQDPNIGAP
AYAVYAAFFLYTLYDRGLHILEAAVNEKKNNAAAFRTFPGSSSQSLPIAP
NPTGKGDTTVYFAGLPVFNGPGHASLDDAKNI*
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mRNA from alignment at tig00004370_pilon:1110124..1111572-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9044.t1 ID=Gchil9044.t1|Name=Gchil9044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004370_pilon:1110124..1111572- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCCCACTACAGTTCTTTTCTTGCTGCTTTCTGCATTTTTGGGAGC
TGCCCTGGCTGACTACGGTCGTGAAGAACACGACTTAGGGCCTCCAGAGG
AAGACTTCGCCTTAGATCCGGAGGTTATCGGAGATGACGCTAGCATACCA
GCGGATGACGAAGCTCTGGCTAGTGTCGAAAAAGAGAGTAATGACCTGGC
AGCTAAATTGAAGGAAATGGAACTACTGAAGTCTCGAATCAAGACAAAGA
ATGAACTTCTCAAGCGCGTGCAGAACTTACGAAGCACTCTTGATAACACC
GAAAAACTTGAACAAGAAGTAAAGGAGGAAGAATCAAAGGTTGAGGAAAG
TTTAAACCTCGCCGTGAAGAAGAAGAACGACACTTTCGATGAAAAAGAGC
ACATCGCTGTCGAGAGGAGGGATATTGAGCGGCGTACAGAGGAAGCTCAC
GAAGAGGAAAAGAAGTACGCCGCAGAGCTTCTTCACGTTGAAGAAAACAG
AAAAAAAAAAGAAGCAGAAGAAAAGGAGTTGGAAGACGAACATAAGCGTT
TAATGGAGGAGATACAAGTTATTGTTGAACGATTCAGAGAAAATGGTTTC
CATGCTTGGTTGGAACAGAATGTGAAAGACTTCCCTCCTGTGATTCGGGA
AACAATCCTTAAGTCAACGTCTGTACTTTATCCTGTTTTTGACGGCATTG
AAGATGCTGCAGAATTGAACGAACGCCTCACCGCAGAGACGACGGAGGCC
ATCACCCAGTACCTTCCGGCTATCAAAAGCAGCCCATTTTACACTGGTCT
TATCTTCTACGTAATACTATTGTTTCCTATAGTCGCCGTGATGTGGCTTG
TATCCAAAGTTCGAGCACGGCTTTCAATGCTCACAATTGAGCATTATCTT
ATCGCCATGAACATGTACTTTGGTATTTTGAGTCTTGCTTGCGCTTTCAT
GACGCTCATTGGGAAGACAGACATCCTTATTGTATTCAGACATCGTTCCC
AACGCGTCGCCGAAGCTTTTATGATTCTTCATGGCTTTTTGTTCATTGTC
CACCTCGCTTTACATGGTATAACAGCCTACGTATCTGGATCACGAAAAGA
TTTCGCCCAATACATTGGAATCTCATGCGTTGGACTTCACTTTTTCTTGA
ATGCTTACAAGCGCACCATCCTTGACCAAGATCCTAACATAGGGGCCCCC
GCGTATGCCGTGTATGCAGCGTTCTTCTTGTACACCTTATACGATAGAGG
ACTGCATATTCTCGAAGCTGCTGTTAATGAAAAAAAGAACAACGCGGCAG
CTTTTCGAACCTTCCCTGGCTCCTCTTCACAAAGCCTCCCAATAGCTCCA
AACCCTACTGGAAAGGGAGATACAACGGTCTACTTCGCTGGTCTGCCTGT
TTTTAATGGCCCTGGTCACGCATCATTGGACGACGCAAAGAATATTTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1110124..1111572-

>Gchil9044.t1 ID=Gchil9044.t1|Name=Gchil9044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00004370_pilon:1110124..1111572- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCCCACTACAGTTCTTTTCTTGCTGCTTTCTGCATTTTTGGGAGC
TGCCCTGGCTGACTACGGTCGTGAAGAACACGACTTAGGGCCTCCAGAGG
AAGACTTCGCCTTAGATCCGGAGGTTATCGGAGATGACGCTAGCATACCA
GCGGATGACGAAGCTCTGGCTAGTGTCGAAAAAGAGAGTAATGACCTGGC
AGCTAAATTGAAGGAAATGGAACTACTGAAGTCTCGAATCAAGACAAAGA
ATGAACTTCTCAAGCGCGTGCAGAACTTACGAAGCACTCTTGATAACACC
GAAAAACTTGAACAAGAAGTAAAGGAGGAAGAATCAAAGGTTGAGGAAAG
TTTAAACCTCGCCGTGAAGAAGAAGAACGACACTTTCGATGAAAAAGAGC
ACATCGCTGTCGAGAGGAGGGATATTGAGCGGCGTACAGAGGAAGCTCAC
GAAGAGGAAAAGAAGTACGCCGCAGAGCTTCTTCACGTTGAAGAAAACAG
AAAAAAAAAAGAAGCAGAAGAAAAGGAGTTGGAAGACGAACATAAGCGTT
TAATGGAGGAGATACAAGTTATTGTTGAACGATTCAGAGAAAATGGTTTC
CATGCTTGGTTGGAACAGAATGTGAAAGACTTCCCTCCTGTGATTCGGGA
AACAATCCTTAAGTCAACGTCTGTACTTTATCCTGTTTTTGACGGCATTG
AAGATGCTGCAGAATTGAACGAACGCCTCACCGCAGAGACGACGGAGGCC
ATCACCCAGTACCTTCCGGCTATCAAAAGCAGCCCATTTTACACTGGTCT
TATCTTCTACGTAATACTATTGTTTCCTATAGTCGCCGTGATGTGGCTTG
TATCCAAAGTTCGAGCACGGCTTTCAATGCTCACAATTGAGCATTATCTT
ATCGCCATGAACATGTACTTTGGTATTTTGAGTCTTGCTTGCGCTTTCAT
GACGCTCATTGGGAAGACAGACATCCTTATTGTATTCAGACATCGTTCCC
AACGCGTCGCCGAAGCTTTTATGATTCTTCATGGCTTTTTGTTCATTGTC
CACCTCGCTTTACATGGTATAACAGCCTACGTATCTGGATCACGAAAAGA
TTTCGCCCAATACATTGGAATCTCATGCGTTGGACTTCACTTTTTCTTGA
ATGCTTACAAGCGCACCATCCTTGACCAAGATCCTAACATAGGGGCCCCC
GCGTATGCCGTGTATGCAGCGTTCTTCTTGTACACCTTATACGATAGAGG
ACTGCATATTCTCGAAGCTGCTGTTAATGAAAAAAAGAACAACGCGGCAG
CTTTTCGAACCTTCCCTGGCTCCTCTTCACAAAGCCTCCCAATAGCTCCA
AACCCTACTGGAAAGGGAGATACAACGGTCTACTTCGCTGGTCTGCCTGT
TTTTAATGGCCCTGGTCACGCATCATTGGACGACGCAAAGAATATTTGA
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