Gchil9042.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9042.t1
Unique Name	Gchil9042.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	740

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1101664..1103883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707714.1
PFAMs	PH,Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04456,ko:K13303
KEGG Pathway	ko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG Module	M00676
Evalue	9.73e-63
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9042	Gchil9042	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1101664..1103883 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9042.t1.start1	Gchil9042.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1101664..1101666 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9042.t1.CDS1	Gchil9042.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1101664..1103883 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9042.t1.exon1	Gchil9042.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1101664..1103883 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9042.t1.stop1	Gchil9042.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1103881..1103883 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9042.t1	Gchil9042.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1101664..1103883 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1101664..1103883+
coding sequence from alignment at tig00004370_pilon:1101664..1103883+

mRNA sequence

>Gchil9042.t1 ID=Gchil9042.t1|Name=Gchil9042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=740bp
MSRGPREDWRRASGSLNKRSRRAAIFDAAARGADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHASQRALDDGTPSLHTNTPFVIATTADEHRANHN
PPATPRYPSFGSDIPSVTSLRDPDSRYAHPALRPTFDALRLLRKISEVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYILLTRDHNSLAAISDSTCQN
PVDYIFGATHCHISRVISRSGTVRLHLTRTASRRRNDSATATSSGIVDDD
DLNFRPVESDARLSERSGKSNASEKSTLGSKSTLGSTMMRILSGKIKSKP
ATSELAISEEISAELIMKIPSAPEAEKWEWALKNTTQAYESKRLGDFQLI
DALGAGAFGRVYLVHDTVKGEYLALKVLEKSLVFRDRLHFESAVNERLTL
ELVRGKPFMAQLRYAFQTASCLYLVTDFYEGGDLFSFLKSHHSGVRESQA
IRIIAEVVLALQSMHDMGIVYRDLKPENVLLDSEGHVRLADLGLAKLLSR
ENEYLTKTICGSLSYAAPEMLSEKHYGIAFDMWTLGVFIYQVLTGDLPFE
TENRSRQEILEDQRKAEIPINGLSDEGYSLVCALLRPNPLRRPTCPELRD
YPIFAAIDWDELMRKRPHPNSVKDVMEKISLEARSMEKEAPTTENVGGES
GAYLLRNFDPDEWSNMSFSDVSDGCSTASFFKPNFNIIDELPNMTRWIPG
WSLTADNVVPLSKPQLAVPQFGRKHVTRSARRLSEKAYR*

spliced messenger RNA

>Gchil9042.t1 ID=Gchil9042.t1|Name=Gchil9042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2220bp|location=Sequence derived from alignment at tig00004370_pilon:1101664..1103883+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGAGGTCCCCGCGAAGACTGGCGCCGCGCCTCCGGCTCCCTCAA
CAAGCGCTCGCGTCGCGCCGCTATCTTcgacgcagccgcccgcggcgccg
actccttctcctccgtcgccggccgctggtcgctatcgcgtcgtcgtcgc
tcccgcgccgcctccgATCACAAGCGCCTTCGCAAGCGCCGTTCTTTCCA
CGCTTCTCAAAGAGCCCTCGACGACGGCACCCCATCGCTACACACCAACA
CGCCCTTCGTCATTGCAACTACCGCCGATGAGCACCGCGCCAACCACAAC
CCCCCCGCCACCCCCAGGTACCCCTCATTCGGCAGCGACATTCCGTCCGT
TACTAGTCTGCGCGACCCGGATTCGCGCTATGCCCACCCCGCTCTCAGAC
CCACCTTCGACGCCCTGCGTCTGCTTCGCAAGATTTCTGAGGTCATGGCC
GGTTGGGTCCAAATCAAGTGTCCTACCGGACCTGGCCGTCTCAGGTGGTC
GACTTGGACCATGTTTTGGGCGGAGCTTCGTGGTGGCTACATCCTGCTCA
CGCGTGACCACAATTCCTTGGCCGCCATATCTGACTCCACCTGCCAGAAC
CCGGTTGATTACATCTTTGGCGCCACCCACTGCCACATCTCACGTGTGAT
ATCGCGTTCGGGCACTGTGCGTTTACACCTCACGCGAACTGCCTCCAGAC
GTCGTAACGATTCCGCCACTGCCACTAGCTCAGGCATTGTTGATGATGAT
GATTTGAACTTCCGACCCGTCGAATCGGATGCCCGCCTCTCGGAGCGATC
AGGGAAGAGCAATGCCTCGGAGAAAAGCACTTTAGGGTCCAAAAGCACTT
TAGGGTCCACCATGATGAGGATACTCAGCGGTAAGATAAAGAGCAAGCCT
GCAACCTCTGAGCTTGCCATTTCTGAAGAGATCAGCGCCGAGCTTATCAT
GAAGATCCCAAGCGCCCCCGAGGCCGAAAAATGGGAGTGGGCGTTGAAAA
ACACAACCCAGGCCTACGAATCGAAACGCCTTGGCGATTTTCAGCTAATT
GATGCGCTTGGCGCCGGCGCCTTTGGTCGTGTGTACTTGGTTCATGATAC
TGTCAAGGGCGAATATCTTGCTCTTAAAGTACTGGAGAAGAGCTTAGTCT
TCAGAGACAGGCTTCATTTTGAAAGTGCAGTCAATGAGCGTCTCACCCTG
GAGCTTGTGCGCGGAAAGCCGTTCATGGCACAGCTTCGGTATGCATTTCA
GACCGCTTCGTGTCTCTATCTTGTCACAGACTTTTACGAGGGCGGGGACT
TGTTTTCTTTTCTAAAGTCGCACCATAGCGGAGTTAGAGAGAGTCAGGCT
ATTCGCATCATTGCCGAGGTTGTTTTGGCTCTTCAAAGTATGCACGATAT
GGGCATCGTGTACAGAGATCTCAAGCCCGAAAATGTCCTACTTGATTCTG
AGGGGCACGTTCGCTTGGCTGATCTGGGTCTTGCCAAGCTTCTCAGTCGT
GAGAATGAGTACTTGACCAAGACTATCTGCGGCTCACTGTCTTACGCGGC
TCCAGAGATGCTGAGCGAGAAACATTACGGCATTGCCTTCGACATGTGGA
CGCTGGGCGTCTTCATCTACCAAGTGTTGACGGGTGACTTGCCATTTGAG
ACAGAGAATAGGAGTAGACAGGAAATACTGGAAGATCAACGAAAGGCTGA
AATTCCTATCAACGGGCTATCTGACGAAGGATATTCTCTGGTTTGCGCGC
TGCTGCGCCCTAATCCACTCCGACGTCCGACATGCCCCGAGCTGAGAGAC
TACCCGATTTTCGCGGCAATCGACTGGGATGAGCTGATGCGCAAAAGACC
GCATCCGAATTCGGTAAAGGATGTTATGGAAAAGATCTCTTTGGAGGCTA
GGAGTATGGAGAAAGAGGCGCCTACGACTGAGAATGTTGGGGGCGAAAGC
GGTGCGTATCTTCTACGCAATTTCGATCCTGATGAATGGTCCAATATGAG
CTTCAGCGATGTGTCCGATGGCTGTTCTACAGCAAGCTTTTTCAAACCGA
ATTTCAATATCATCGACGAATTACCAAACATGACAAGGTGGATTCCAGGT
TGGAGTCTTACCGCTGACAATGTCGTGCCTCTGTCCAAACCGCAGCTTGC
GGTGCCGCAATTTGGCAGGAAGCATGTCACTCGGAGTGCGCGACGTTTAT
CGGAAAAGGCATATCGTTAG

protein sequence of Gchil9042.t1

>Gchil9042.t1 ID=Gchil9042.t1|Name=Gchil9042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=740bp
MSRGPREDWRRASGSLNKRSRRAAIFDAAARGADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHASQRALDDGTPSLHTNTPFVIATTADEHRANHN
PPATPRYPSFGSDIPSVTSLRDPDSRYAHPALRPTFDALRLLRKISEVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYILLTRDHNSLAAISDSTCQN
PVDYIFGATHCHISRVISRSGTVRLHLTRTASRRRNDSATATSSGIVDDD
DLNFRPVESDARLSERSGKSNASEKSTLGSKSTLGSTMMRILSGKIKSKP
ATSELAISEEISAELIMKIPSAPEAEKWEWALKNTTQAYESKRLGDFQLI
DALGAGAFGRVYLVHDTVKGEYLALKVLEKSLVFRDRLHFESAVNERLTL
ELVRGKPFMAQLRYAFQTASCLYLVTDFYEGGDLFSFLKSHHSGVRESQA
IRIIAEVVLALQSMHDMGIVYRDLKPENVLLDSEGHVRLADLGLAKLLSR
ENEYLTKTICGSLSYAAPEMLSEKHYGIAFDMWTLGVFIYQVLTGDLPFE
TENRSRQEILEDQRKAEIPINGLSDEGYSLVCALLRPNPLRRPTCPELRD
YPIFAAIDWDELMRKRPHPNSVKDVMEKISLEARSMEKEAPTTENVGGES
GAYLLRNFDPDEWSNMSFSDVSDGCSTASFFKPNFNIIDELPNMTRWIPG
WSLTADNVVPLSKPQLAVPQFGRKHVTRSARRLSEKAYR*

mRNA from alignment at tig00004370_pilon:1101664..1103883+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9042.t1 ID=Gchil9042.t1|Name=Gchil9042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2220bp|location=Sequence derived from alignment at tig00004370_pilon:1101664..1103883+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCGAGGTCCCCGCGAAGACTGGCGCCGCGCCTCCGGCTCCCTCAA
CAAGCGCTCGCGTCGCGCCGCTATCTTcgacgcagccgcccgcggcgccg
actccttctcctccgtcgccggccgctggtcgctatcgcgtcgtcgtcgc
tcccgcgccgcctccgATCACAAGCGCCTTCGCAAGCGCCGTTCTTTCCA
CGCTTCTCAAAGAGCCCTCGACGACGGCACCCCATCGCTACACACCAACA
CGCCCTTCGTCATTGCAACTACCGCCGATGAGCACCGCGCCAACCACAAC
CCCCCCGCCACCCCCAGGTACCCCTCATTCGGCAGCGACATTCCGTCCGT
TACTAGTCTGCGCGACCCGGATTCGCGCTATGCCCACCCCGCTCTCAGAC
CCACCTTCGACGCCCTGCGTCTGCTTCGCAAGATTTCTGAGGTCATGGCC
GGTTGGGTCCAAATCAAGTGTCCTACCGGACCTGGCCGTCTCAGGTGGTC
GACTTGGACCATGTTTTGGGCGGAGCTTCGTGGTGGCTACATCCTGCTCA
CGCGTGACCACAATTCCTTGGCCGCCATATCTGACTCCACCTGCCAGAAC
CCGGTTGATTACATCTTTGGCGCCACCCACTGCCACATCTCACGTGTGAT
ATCGCGTTCGGGCACTGTGCGTTTACACCTCACGCGAACTGCCTCCAGAC
GTCGTAACGATTCCGCCACTGCCACTAGCTCAGGCATTGTTGATGATGAT
GATTTGAACTTCCGACCCGTCGAATCGGATGCCCGCCTCTCGGAGCGATC
AGGGAAGAGCAATGCCTCGGAGAAAAGCACTTTAGGGTCCAAAAGCACTT
TAGGGTCCACCATGATGAGGATACTCAGCGGTAAGATAAAGAGCAAGCCT
GCAACCTCTGAGCTTGCCATTTCTGAAGAGATCAGCGCCGAGCTTATCAT
GAAGATCCCAAGCGCCCCCGAGGCCGAAAAATGGGAGTGGGCGTTGAAAA
ACACAACCCAGGCCTACGAATCGAAACGCCTTGGCGATTTTCAGCTAATT
GATGCGCTTGGCGCCGGCGCCTTTGGTCGTGTGTACTTGGTTCATGATAC
TGTCAAGGGCGAATATCTTGCTCTTAAAGTACTGGAGAAGAGCTTAGTCT
TCAGAGACAGGCTTCATTTTGAAAGTGCAGTCAATGAGCGTCTCACCCTG
GAGCTTGTGCGCGGAAAGCCGTTCATGGCACAGCTTCGGTATGCATTTCA
GACCGCTTCGTGTCTCTATCTTGTCACAGACTTTTACGAGGGCGGGGACT
TGTTTTCTTTTCTAAAGTCGCACCATAGCGGAGTTAGAGAGAGTCAGGCT
ATTCGCATCATTGCCGAGGTTGTTTTGGCTCTTCAAAGTATGCACGATAT
GGGCATCGTGTACAGAGATCTCAAGCCCGAAAATGTCCTACTTGATTCTG
AGGGGCACGTTCGCTTGGCTGATCTGGGTCTTGCCAAGCTTCTCAGTCGT
GAGAATGAGTACTTGACCAAGACTATCTGCGGCTCACTGTCTTACGCGGC
TCCAGAGATGCTGAGCGAGAAACATTACGGCATTGCCTTCGACATGTGGA
CGCTGGGCGTCTTCATCTACCAAGTGTTGACGGGTGACTTGCCATTTGAG
ACAGAGAATAGGAGTAGACAGGAAATACTGGAAGATCAACGAAAGGCTGA
AATTCCTATCAACGGGCTATCTGACGAAGGATATTCTCTGGTTTGCGCGC
TGCTGCGCCCTAATCCACTCCGACGTCCGACATGCCCCGAGCTGAGAGAC
TACCCGATTTTCGCGGCAATCGACTGGGATGAGCTGATGCGCAAAAGACC
GCATCCGAATTCGGTAAAGGATGTTATGGAAAAGATCTCTTTGGAGGCTA
GGAGTATGGAGAAAGAGGCGCCTACGACTGAGAATGTTGGGGGCGAAAGC
GGTGCGTATCTTCTACGCAATTTCGATCCTGATGAATGGTCCAATATGAG
CTTCAGCGATGTGTCCGATGGCTGTTCTACAGCAAGCTTTTTCAAACCGA
ATTTCAATATCATCGACGAATTACCAAACATGACAAGGTGGATTCCAGGT
TGGAGTCTTACCGCTGACAATGTCGTGCCTCTGTCCAAACCGCAGCTTGC
GGTGCCGCAATTTGGCAGGAAGCATGTCACTCGGAGTGCGCGACGTTTAT
CGGAAAAGGCATATCGTTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:1101664..1103883+

>Gchil9042.t1 ID=Gchil9042.t1|Name=Gchil9042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2220bp|location=Sequence derived from alignment at tig00004370_pilon:1101664..1103883+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCGAGGTCCCCGCGAAGACTGGCGCCGCGCCTCCGGCTCCCTCAA
CAAGCGCTCGCGTCGCGCCGCTATCTTcgacgcagccgcccgcggcgccg
actccttctcctccgtcgccggccgctggtcgctatcgcgtcgtcgtcgc
tcccgcgccgcctccgATCACAAGCGCCTTCGCAAGCGCCGTTCTTTCCA
CGCTTCTCAAAGAGCCCTCGACGACGGCACCCCATCGCTACACACCAACA
CGCCCTTCGTCATTGCAACTACCGCCGATGAGCACCGCGCCAACCACAAC
CCCCCCGCCACCCCCAGGTACCCCTCATTCGGCAGCGACATTCCGTCCGT
TACTAGTCTGCGCGACCCGGATTCGCGCTATGCCCACCCCGCTCTCAGAC
CCACCTTCGACGCCCTGCGTCTGCTTCGCAAGATTTCTGAGGTCATGGCC
GGTTGGGTCCAAATCAAGTGTCCTACCGGACCTGGCCGTCTCAGGTGGTC
GACTTGGACCATGTTTTGGGCGGAGCTTCGTGGTGGCTACATCCTGCTCA
CGCGTGACCACAATTCCTTGGCCGCCATATCTGACTCCACCTGCCAGAAC
CCGGTTGATTACATCTTTGGCGCCACCCACTGCCACATCTCACGTGTGAT
ATCGCGTTCGGGCACTGTGCGTTTACACCTCACGCGAACTGCCTCCAGAC
GTCGTAACGATTCCGCCACTGCCACTAGCTCAGGCATTGTTGATGATGAT
GATTTGAACTTCCGACCCGTCGAATCGGATGCCCGCCTCTCGGAGCGATC
AGGGAAGAGCAATGCCTCGGAGAAAAGCACTTTAGGGTCCAAAAGCACTT
TAGGGTCCACCATGATGAGGATACTCAGCGGTAAGATAAAGAGCAAGCCT
GCAACCTCTGAGCTTGCCATTTCTGAAGAGATCAGCGCCGAGCTTATCAT
GAAGATCCCAAGCGCCCCCGAGGCCGAAAAATGGGAGTGGGCGTTGAAAA
ACACAACCCAGGCCTACGAATCGAAACGCCTTGGCGATTTTCAGCTAATT
GATGCGCTTGGCGCCGGCGCCTTTGGTCGTGTGTACTTGGTTCATGATAC
TGTCAAGGGCGAATATCTTGCTCTTAAAGTACTGGAGAAGAGCTTAGTCT
TCAGAGACAGGCTTCATTTTGAAAGTGCAGTCAATGAGCGTCTCACCCTG
GAGCTTGTGCGCGGAAAGCCGTTCATGGCACAGCTTCGGTATGCATTTCA
GACCGCTTCGTGTCTCTATCTTGTCACAGACTTTTACGAGGGCGGGGACT
TGTTTTCTTTTCTAAAGTCGCACCATAGCGGAGTTAGAGAGAGTCAGGCT
ATTCGCATCATTGCCGAGGTTGTTTTGGCTCTTCAAAGTATGCACGATAT
GGGCATCGTGTACAGAGATCTCAAGCCCGAAAATGTCCTACTTGATTCTG
AGGGGCACGTTCGCTTGGCTGATCTGGGTCTTGCCAAGCTTCTCAGTCGT
GAGAATGAGTACTTGACCAAGACTATCTGCGGCTCACTGTCTTACGCGGC
TCCAGAGATGCTGAGCGAGAAACATTACGGCATTGCCTTCGACATGTGGA
CGCTGGGCGTCTTCATCTACCAAGTGTTGACGGGTGACTTGCCATTTGAG
ACAGAGAATAGGAGTAGACAGGAAATACTGGAAGATCAACGAAAGGCTGA
AATTCCTATCAACGGGCTATCTGACGAAGGATATTCTCTGGTTTGCGCGC
TGCTGCGCCCTAATCCACTCCGACGTCCGACATGCCCCGAGCTGAGAGAC
TACCCGATTTTCGCGGCAATCGACTGGGATGAGCTGATGCGCAAAAGACC
GCATCCGAATTCGGTAAAGGATGTTATGGAAAAGATCTCTTTGGAGGCTA
GGAGTATGGAGAAAGAGGCGCCTACGACTGAGAATGTTGGGGGCGAAAGC
GGTGCGTATCTTCTACGCAATTTCGATCCTGATGAATGGTCCAATATGAG
CTTCAGCGATGTGTCCGATGGCTGTTCTACAGCAAGCTTTTTCAAACCGA
ATTTCAATATCATCGACGAATTACCAAACATGACAAGGTGGATTCCAGGT
TGGAGTCTTACCGCTGACAATGTCGTGCCTCTGTCCAAACCGCAGCTTGC
GGTGCCGCAATTTGGCAGGAAGCATGTCACTCGGAGTGCGCGACGTTTAT
CGGAAAAGGCATATCGTTAG