Gchil9040.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9040.t1
Unique Name	Gchil9040.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1089763..1091004 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004349375.1
PFAMs	DAO
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00031
KEGG ko	ko:K00109
KEGG Reaction	R03534
KEGG Pathway	ko00650,map00650
Evalue	7.84e-126
EggNOG OGs	COG0579@1\|root,KOG2665@2759\|Eukaryota,397NY@33154\|Opisthokonta
EC	1.1.99.2
Description	2-hydroxyglutarate dehydrogenase activity
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9040	Gchil9040	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1089763..1091004 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9040.t1.start1	Gchil9040.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1089763..1089765 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9040.t1.CDS1	Gchil9040.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1089763..1091004 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9040.t1.exon1	Gchil9040.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1089763..1091004 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9040.t1.stop1	Gchil9040.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1091002..1091004 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9040.t1	Gchil9040.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1089763..1091004 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1089763..1091004+
coding sequence from alignment at tig00004370_pilon:1089763..1091004+

mRNA sequence

>Gchil9040.t1 ID=Gchil9040.t1|Name=Gchil9040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MRVKAISSTTKVAVVGGGIVGLATARELLLRNVHPVTVLEAEPKLAAHQT
GRNSGVIHAGIYYAPHSLKAKLCLEGLHKTYAYLEEKSIPHKKVGKLIVA
LNDSQVPELQRLFSNAQQNGVPDIRLVDADEIRRIEPECAGVAAIHSPIT
GIVDWALVAEHYAHDIRSLGGEIRTKARVTDIKCNDSISLTYTNGTESNV
LHADKLISCAGLFSDRVARLLGGERAPQILPVRGEYLRVTNTHIASRIRG
NIYPVPDPETGSPFLGVHFTPSMSGELIVGPNAVLAFSRTGYRALDFSFR
DFWEMLSYPGFWPLAKRFWRHGASELYHSLFISAAAKSAREYVPALTTTD
FERRGSQTYGVRAQALGLGGELVDDFVFETAADGRVLHTRNAPSPAATSS
LAIARVIADRSQG*

spliced messenger RNA

>Gchil9040.t1 ID=Gchil9040.t1|Name=Gchil9040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00004370_pilon:1089763..1091004+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGTGAAAGCCATTTCGTCCACGACAAAAGTTGCTGTTGTTGGTGG
TGGCATTGTTGGCCTGGCCACAGCTAGAGAGCTTCTTCTCCGCAATGTAC
ACCCCGTAACTGTGTTGGAGGCTGAACCAAAGCTCGCTGCCCATCAGACG
GGTCGTAATTCAGGCGTCATTCACGCCGGAATTTACTACGCTCCACACTC
GCTCAAGGCCAAGTTGTGTCTAGAGGGGCTGCACAAGACGTACGCCTACC
TCGAAGAAAAATCTATTCCACACAAAAAAGTTGGAAAACTCATCGTTGCT
CTGAATGATTCACAAGTCCCGGAGCTTCAAAGACTGTTCTCAAACGCCCA
GCAAAATGGTGTCCCCGACATCCGCCTCGTGGACGCGGATGAAATTCGCC
GCATAGAACCTGAATGTGCTGGCGTAGCCGCTATTCATTCTCCAATAACA
GGAATAGTGGATTGGGCACTAGTTGCAGAGCACTACGCACATGACATCCG
ATCTCTCGGAGGTGAAATACGAACGAAAGCTCGCGTTACTGACATCAAAT
GTAATGACTCCATATCATTAACTTATACAAATGGTACTGAGTCAAACGTG
CTCCATGCGGATAAGCTCATTTCATGCGCTGGGCTCTTCTCTGATCGCGT
TGCTCGTCTACTTGGAGGAGAAAGAGCCCCTCAGATTTTACCTGTTCGTG
GGGAGTACCTTCGTGTTACTAACACACATATTGCCAGTAGGATCAGAGGG
AACATATACCCTGTGCCTGACCCAGAAACGGGCTCGCCCTTCCTAGGTGT
ACACTTCACGCCTTCCATGTCAGGCGAACTTATTGTAGGTCCTAATGCAG
TGCTAGCGTTTTCTCGAACCGGTTACCGTGCGTTGGACTTCTCCTTTCGA
GATTTTTGGGAAATGCTTTCATACCCTGGCTTTTGGCCGCTGGCAAAGCG
TTTCTGGCGTCATGGAGCGTCTGAACTATACCACAGCTTATTCATCTCTG
CAGCTGCAAAATCTGCCCGAGAGTATGTTCCTGCGCTGACTACCACGGAC
TTTGAGAGAAGAGGTTCTCAGACTTATGGTGTTCGCGCGCAAGCACTGGG
ACTGGGTGGGGAGCTTGTTGACGACTTCGTTTTCGAAACAGCCGCAGATG
GAAGAGTGCTTCACACGAGGAACGCACCGAGCCCAGCGGCGACTTCATCA
CTTGCCATTGCTCGCGTAATCGCTGACAGGAGTCAAGGGTGA

protein sequence of Gchil9040.t1

>Gchil9040.t1 ID=Gchil9040.t1|Name=Gchil9040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MRVKAISSTTKVAVVGGGIVGLATARELLLRNVHPVTVLEAEPKLAAHQT
GRNSGVIHAGIYYAPHSLKAKLCLEGLHKTYAYLEEKSIPHKKVGKLIVA
LNDSQVPELQRLFSNAQQNGVPDIRLVDADEIRRIEPECAGVAAIHSPIT
GIVDWALVAEHYAHDIRSLGGEIRTKARVTDIKCNDSISLTYTNGTESNV
LHADKLISCAGLFSDRVARLLGGERAPQILPVRGEYLRVTNTHIASRIRG
NIYPVPDPETGSPFLGVHFTPSMSGELIVGPNAVLAFSRTGYRALDFSFR
DFWEMLSYPGFWPLAKRFWRHGASELYHSLFISAAAKSAREYVPALTTTD
FERRGSQTYGVRAQALGLGGELVDDFVFETAADGRVLHTRNAPSPAATSS
LAIARVIADRSQG*

mRNA from alignment at tig00004370_pilon:1089763..1091004+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9040.t1 ID=Gchil9040.t1|Name=Gchil9040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00004370_pilon:1089763..1091004+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGGTGAAAGCCATTTCGTCCACGACAAAAGTTGCTGTTGTTGGTGG
TGGCATTGTTGGCCTGGCCACAGCTAGAGAGCTTCTTCTCCGCAATGTAC
ACCCCGTAACTGTGTTGGAGGCTGAACCAAAGCTCGCTGCCCATCAGACG
GGTCGTAATTCAGGCGTCATTCACGCCGGAATTTACTACGCTCCACACTC
GCTCAAGGCCAAGTTGTGTCTAGAGGGGCTGCACAAGACGTACGCCTACC
TCGAAGAAAAATCTATTCCACACAAAAAAGTTGGAAAACTCATCGTTGCT
CTGAATGATTCACAAGTCCCGGAGCTTCAAAGACTGTTCTCAAACGCCCA
GCAAAATGGTGTCCCCGACATCCGCCTCGTGGACGCGGATGAAATTCGCC
GCATAGAACCTGAATGTGCTGGCGTAGCCGCTATTCATTCTCCAATAACA
GGAATAGTGGATTGGGCACTAGTTGCAGAGCACTACGCACATGACATCCG
ATCTCTCGGAGGTGAAATACGAACGAAAGCTCGCGTTACTGACATCAAAT
GTAATGACTCCATATCATTAACTTATACAAATGGTACTGAGTCAAACGTG
CTCCATGCGGATAAGCTCATTTCATGCGCTGGGCTCTTCTCTGATCGCGT
TGCTCGTCTACTTGGAGGAGAAAGAGCCCCTCAGATTTTACCTGTTCGTG
GGGAGTACCTTCGTGTTACTAACACACATATTGCCAGTAGGATCAGAGGG
AACATATACCCTGTGCCTGACCCAGAAACGGGCTCGCCCTTCCTAGGTGT
ACACTTCACGCCTTCCATGTCAGGCGAACTTATTGTAGGTCCTAATGCAG
TGCTAGCGTTTTCTCGAACCGGTTACCGTGCGTTGGACTTCTCCTTTCGA
GATTTTTGGGAAATGCTTTCATACCCTGGCTTTTGGCCGCTGGCAAAGCG
TTTCTGGCGTCATGGAGCGTCTGAACTATACCACAGCTTATTCATCTCTG
CAGCTGCAAAATCTGCCCGAGAGTATGTTCCTGCGCTGACTACCACGGAC
TTTGAGAGAAGAGGTTCTCAGACTTATGGTGTTCGCGCGCAAGCACTGGG
ACTGGGTGGGGAGCTTGTTGACGACTTCGTTTTCGAAACAGCCGCAGATG
GAAGAGTGCTTCACACGAGGAACGCACCGAGCCCAGCGGCGACTTCATCA
CTTGCCATTGCTCGCGTAATCGCTGACAGGAGTCAAGGGTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:1089763..1091004+

>Gchil9040.t1 ID=Gchil9040.t1|Name=Gchil9040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00004370_pilon:1089763..1091004+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGGTGAAAGCCATTTCGTCCACGACAAAAGTTGCTGTTGTTGGTGG
TGGCATTGTTGGCCTGGCCACAGCTAGAGAGCTTCTTCTCCGCAATGTAC
ACCCCGTAACTGTGTTGGAGGCTGAACCAAAGCTCGCTGCCCATCAGACG
GGTCGTAATTCAGGCGTCATTCACGCCGGAATTTACTACGCTCCACACTC
GCTCAAGGCCAAGTTGTGTCTAGAGGGGCTGCACAAGACGTACGCCTACC
TCGAAGAAAAATCTATTCCACACAAAAAAGTTGGAAAACTCATCGTTGCT
CTGAATGATTCACAAGTCCCGGAGCTTCAAAGACTGTTCTCAAACGCCCA
GCAAAATGGTGTCCCCGACATCCGCCTCGTGGACGCGGATGAAATTCGCC
GCATAGAACCTGAATGTGCTGGCGTAGCCGCTATTCATTCTCCAATAACA
GGAATAGTGGATTGGGCACTAGTTGCAGAGCACTACGCACATGACATCCG
ATCTCTCGGAGGTGAAATACGAACGAAAGCTCGCGTTACTGACATCAAAT
GTAATGACTCCATATCATTAACTTATACAAATGGTACTGAGTCAAACGTG
CTCCATGCGGATAAGCTCATTTCATGCGCTGGGCTCTTCTCTGATCGCGT
TGCTCGTCTACTTGGAGGAGAAAGAGCCCCTCAGATTTTACCTGTTCGTG
GGGAGTACCTTCGTGTTACTAACACACATATTGCCAGTAGGATCAGAGGG
AACATATACCCTGTGCCTGACCCAGAAACGGGCTCGCCCTTCCTAGGTGT
ACACTTCACGCCTTCCATGTCAGGCGAACTTATTGTAGGTCCTAATGCAG
TGCTAGCGTTTTCTCGAACCGGTTACCGTGCGTTGGACTTCTCCTTTCGA
GATTTTTGGGAAATGCTTTCATACCCTGGCTTTTGGCCGCTGGCAAAGCG
TTTCTGGCGTCATGGAGCGTCTGAACTATACCACAGCTTATTCATCTCTG
CAGCTGCAAAATCTGCCCGAGAGTATGTTCCTGCGCTGACTACCACGGAC
TTTGAGAGAAGAGGTTCTCAGACTTATGGTGTTCGCGCGCAAGCACTGGG
ACTGGGTGGGGAGCTTGTTGACGACTTCGTTTTCGAAACAGCCGCAGATG
GAAGAGTGCTTCACACGAGGAACGCACCGAGCCCAGCGGCGACTTCATCA
CTTGCCATTGCTCGCGTAATCGCTGACAGGAGTCAAGGGTGA