Gchil9039.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9039.t1
Unique NameGchil9039.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1086376..1087071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5334.XP_003030366.1
Preferred nameHAP2
PFAMsCBFB_NFYA
Max annot lvl4751|Fungi
KEGG koko:K08064
KEGG Pathwayko04612,ko05152,map04612,map05152
GOsGO:0000429,GO:0000436,GO:0000976,GO:0000977,GO:0000978,GO:0000979,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006109,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010106,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016602,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0030003,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032774,GO:0032991,GO:0033217,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042592,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043457,GO:0043467,GO:0043565,GO:0043618,GO:0043620,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046483,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098771,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue9.01e-13
EggNOG OGsCOG5224@1|root,KOG1561@2759|Eukaryota,38DV3@33154|Opisthokonta,3P578@4751|Fungi,3V2F9@5204|Basidiomycota,22ADK@155619|Agaricomycetes,3W7WP@5338|Agaricales
DescriptionCCAAT-Binding transcription Factor
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9039Gchil9039Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1086376..1087071 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9039.t1.start1Gchil9039.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1086376..1086378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9039.t1.CDS1Gchil9039.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1086376..1087071 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9039.t1.exon1Gchil9039.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1086376..1087071 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9039.t1.stop1Gchil9039.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1087069..1087071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9039.t1Gchil9039.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1086376..1087071 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9039.t1 ID=Gchil9039.t1|Name=Gchil9039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=232bp
MASSESAPMYNAQPLLSAQPHDPPPSSSPQPPVSTPVDSSTVAAAAAAAA
AAAVAVRAVVPHDAKQSHGPVSSSSPPPLPPSSLPAVPSVPAVSAVPTIS
APLSAAALHATPQNPAPIPLSAASAAAAAAAAAAFGTYPGVVFAPPDPSV
MDDQPTYVNPKQYARILKRRESRKKQTGTDVTSYTPRKRSYMHESRHKHA
MQRRRGPGGRFLSKQEDQQISRPKETAAAGQ*
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spliced messenger RNA

>Gchil9039.t1 ID=Gchil9039.t1|Name=Gchil9039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00004370_pilon:1086376..1087071+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTTCGGAGTCCGCGCCCATGTATAACGCGCAACCGCTGCTTTC
TGCACAACCGCACGACCCTCCCCCCTCTTCCTCCCCCCAACCTCCTGTTT
CCACCCCCGTCGATTCCTCCACCGTcgccgctgccgccgccgccgctgcc
gccgccgccgTTGCCGTGCGAGCCGTCGTCCCCCATGATGCTAAGCAGTC
TCACGGCCCCGTCTCCTCCTCTTCCCCCCCTCCTCTTCCCCCCTCCTCCC
TCCCCGCAGTCCCGTCTGTCCCCGCCGTCTCCGCCGTTCCCACCATCTCG
GCCCCGCTCTCCGCCGCCGCTCTGCACGCCACCCCGCAGAACCCCGCTCC
CATACCCTTGAGTgccgcctccgccgccgcagctgccgccgccgccgccg
ccTTTGGAACCTACCCGGGCGTTGTCTTCGCCCCACCCGACCCCTCCGTC
ATGGACGATCAGCCCACCTACGTCAACCCCAAGCAGTATGCTCGCATCCT
CAAACGCAGGGAAAGTCGCAAGAAGCAAACCGGAACAGACGTCACTAGTT
ACACCCCGAGGAAGAGGAGTTATATGCACGAGAGTCGTCACAAGCACGCC
ATGCAACGCCGTCGCGGACCAGGGGGCCGCTTTCTTTCCAAGCAGGAAGA
TCAGCAGATTTCAAGACCCAAAGAAACTGCCGCCGCCGGTCAGTGA
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protein sequence of Gchil9039.t1

>Gchil9039.t1 ID=Gchil9039.t1|Name=Gchil9039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=232bp
MASSESAPMYNAQPLLSAQPHDPPPSSSPQPPVSTPVDSSTVAAAAAAAA
AAAVAVRAVVPHDAKQSHGPVSSSSPPPLPPSSLPAVPSVPAVSAVPTIS
APLSAAALHATPQNPAPIPLSAASAAAAAAAAAAFGTYPGVVFAPPDPSV
MDDQPTYVNPKQYARILKRRESRKKQTGTDVTSYTPRKRSYMHESRHKHA
MQRRRGPGGRFLSKQEDQQISRPKETAAAGQ*
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mRNA from alignment at tig00004370_pilon:1086376..1087071+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9039.t1 ID=Gchil9039.t1|Name=Gchil9039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00004370_pilon:1086376..1087071+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTTCGGAGTCCGCGCCCATGTATAACGCGCAACCGCTGCTTTC
TGCACAACCGCACGACCCTCCCCCCTCTTCCTCCCCCCAACCTCCTGTTT
CCACCCCCGTCGATTCCTCCACCGTcgccgctgccgccgccgccgctgcc
gccgccgccgTTGCCGTGCGAGCCGTCGTCCCCCATGATGCTAAGCAGTC
TCACGGCCCCGTCTCCTCCTCTTCCCCCCCTCCTCTTCCCCCCTCCTCCC
TCCCCGCAGTCCCGTCTGTCCCCGCCGTCTCCGCCGTTCCCACCATCTCG
GCCCCGCTCTCCGCCGCCGCTCTGCACGCCACCCCGCAGAACCCCGCTCC
CATACCCTTGAGTgccgcctccgccgccgcagctgccgccgccgccgccg
ccTTTGGAACCTACCCGGGCGTTGTCTTCGCCCCACCCGACCCCTCCGTC
ATGGACGATCAGCCCACCTACGTCAACCCCAAGCAGTATGCTCGCATCCT
CAAACGCAGGGAAAGTCGCAAGAAGCAAACCGGAACAGACGTCACTAGTT
ACACCCCGAGGAAGAGGAGTTATATGCACGAGAGTCGTCACAAGCACGCC
ATGCAACGCCGTCGCGGACCAGGGGGCCGCTTTCTTTCCAAGCAGGAAGA
TCAGCAGATTTCAAGACCCAAAGAAACTGCCGCCGCCGGTCAGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1086376..1087071+

>Gchil9039.t1 ID=Gchil9039.t1|Name=Gchil9039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00004370_pilon:1086376..1087071+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTTCGGAGTCCGCGCCCATGTATAACGCGCAACCGCTGCTTTC
TGCACAACCGCACGACCCTCCCCCCTCTTCCTCCCCCCAACCTCCTGTTT
CCACCCCCGTCGATTCCTCCACCGTcgccgctgccgccgccgccgctgcc
gccgccgccgTTGCCGTGCGAGCCGTCGTCCCCCATGATGCTAAGCAGTC
TCACGGCCCCGTCTCCTCCTCTTCCCCCCCTCCTCTTCCCCCCTCCTCCC
TCCCCGCAGTCCCGTCTGTCCCCGCCGTCTCCGCCGTTCCCACCATCTCG
GCCCCGCTCTCCGCCGCCGCTCTGCACGCCACCCCGCAGAACCCCGCTCC
CATACCCTTGAGTgccgcctccgccgccgcagctgccgccgccgccgccg
ccTTTGGAACCTACCCGGGCGTTGTCTTCGCCCCACCCGACCCCTCCGTC
ATGGACGATCAGCCCACCTACGTCAACCCCAAGCAGTATGCTCGCATCCT
CAAACGCAGGGAAAGTCGCAAGAAGCAAACCGGAACAGACGTCACTAGTT
ACACCCCGAGGAAGAGGAGTTATATGCACGAGAGTCGTCACAAGCACGCC
ATGCAACGCCGTCGCGGACCAGGGGGCCGCTTTCTTTCCAAGCAGGAAGA
TCAGCAGATTTCAAGACCCAAAGAAACTGCCGCCGCCGGTCAGTGA
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