Gchil9030.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9030.t1
Unique NameGchil9030.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1063389..1064372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705412.1
Preferred nameRSL1D1
PFAMsRibosomal_L1
Max annot lvl2759|Eukaryota
KEGG koko:K14775
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042981,GO:0043043,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0090342,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000772
Evalue1.86e-49
EggNOG OGsKOG1685@1|root,KOG1685@2759|Eukaryota
Descriptionregulation of cellular senescence
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9030Gchil9030Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1063389..1064372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9030.t1Gchil9030.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1063389..1064372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9030.t1.start1Gchil9030.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1063389..1063391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9030.t1.CDS1Gchil9030.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1063389..1063645 +
Gchil9030.t1.CDS2Gchil9030.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1063736..1064372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9030.t1.exon1Gchil9030.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1063389..1063645 +
Gchil9030.t1.exon2Gchil9030.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1063736..1064372 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9030.t1.intron1Gchil9030.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1063646..1063735 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9030.t1.stop1Gchil9030.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1064370..1064372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9030.t1 ID=Gchil9030.t1|Name=Gchil9030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MVKRRRQQQNAVKNVETSSKRIPLATLESAVSVLLRDAVQFETKRNETLI
KAGENVDDLLRPDGDFHLVVTFKFPPVKSKLRPVPIALKHSLWKEGEHEV
CLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEARRELSTMYD
VFLVDQRVAPMMPNLLGNAFLQKRSMPLAVDMKKDVVAAIRRTLTSTSFA
PRQGTCTNVKIGRLDFEEEQLVDNALLAVDGIVRRCGGGWDDIQSFSLKT
SRSPAIQIYLSLPGEQGLEKDADKVKKAKSHDEKIVSNGPRKGSENV*
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spliced messenger RNA

>Gchil9030.t1 ID=Gchil9030.t1|Name=Gchil9030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004370_pilon:1063389..1064372+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAAGCGTCGTCGACAGCAACAGAACGCTGTCAAGAATGTTGAAAC
TTCCTCCAAGCGAATACCGCTCGCGACGCTCGAGTCGGCTGTAAGTGTAC
TGCTCAGAGACGCTGTTCAGTTTGAAACAAAGCGAAATGAAACGTTGATA
AAGGCGGGTGAGAACGTAGACGATTTACTACGACCAGACGGAGACTTTCA
TTTGGTGGTTACGTTCAAGTTTCCACCGGTCAAGTCCAAGTTGCGACCGG
TTCCAATTGCTCTGAAGCATTCGTTGTGGAAAGAAGGAGAACATGAAGTT
TGTCTGTTTGTAAAGGACCCGCAACGTCTTGTGAAGGACTATTTGGCACA
ACACGGAAACGGTGGAGTCACGCGAGTGCTGGGCGTTGAAAAGTTGAGAA
AACGATATGGAACGCACGAAGCCAGACGTGAGCTAAGTACAATGTACGAT
GTGTTTCTCGTAGATCAAAGGGTGGCTCCAATGATGCCAAACTTGTTGGG
AAACGCTTTCCTCCAGAAGAGAAGCATGCCTCTTGCAGTGGATATGAAAA
AAGACGTTGTAGCTGCAATACGAAGAACTTTGACAAGTACGTCATTTGCT
CCGAGACAGGGGACTTGCACCAACGTTAAAATTGGGAGGCTTGACTTCGA
GGAAGAGCAACTTGTTGATAATGCTTTACTGGCTGTTGATGGAATTGTTC
GACGCTGCGGAGGGGGGTGGGATGATATTCAATCGTTCAGTTTGAAAACT
AGTCGCTCTCCTGCTATTCAAATTTATTTGTCGCTTCCTGGAGAACAGGG
CCTGGAGAAGGATGCAGACAAAGTGAAGAAAGCGAAGAGCCACGACGAGA
AAATTGTATCGAATGGACCAAGAAAGGGGAGTGAAAATGTGTAA
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protein sequence of Gchil9030.t1

>Gchil9030.t1 ID=Gchil9030.t1|Name=Gchil9030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MVKRRRQQQNAVKNVETSSKRIPLATLESAVSVLLRDAVQFETKRNETLI
KAGENVDDLLRPDGDFHLVVTFKFPPVKSKLRPVPIALKHSLWKEGEHEV
CLFVKDPQRLVKDYLAQHGNGGVTRVLGVEKLRKRYGTHEARRELSTMYD
VFLVDQRVAPMMPNLLGNAFLQKRSMPLAVDMKKDVVAAIRRTLTSTSFA
PRQGTCTNVKIGRLDFEEEQLVDNALLAVDGIVRRCGGGWDDIQSFSLKT
SRSPAIQIYLSLPGEQGLEKDADKVKKAKSHDEKIVSNGPRKGSENV*
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mRNA from alignment at tig00004370_pilon:1063389..1064372+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9030.t1 ID=Gchil9030.t1|Name=Gchil9030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004370_pilon:1063389..1064372+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTAAGCGTCGTCGACAGCAACAGAACGCTGTCAAGAATGTTGAAAC
TTCCTCCAAGCGAATACCGCTCGCGACGCTCGAGTCGGCTGTAAGTGTAC
TGCTCAGAGACGCTGTTCAGTTTGAAACAAAGCGAAATGAAACGTTGATA
AAGGCGGGTGAGAACGTAGACGATTTACTACGACCAGACGGAGACTTTCA
TTTGGTGGTTACGTTCAAGTTTCCACCGGTCAAGTCCAAGTTGCGACCGG
TTCCAATGTAAGTTTTGCACTTTCGCTTTATTCCTAGATGTCTTTTTTTT
ACTTTTCGGGCAGTTGCTGACGTGATTCAACCTGCTTCTGTGTAAAGTGC
TCTGAAGCATTCGTTGTGGAAAGAAGGAGAACATGAAGTTTGTCTGTTTG
TAAAGGACCCGCAACGTCTTGTGAAGGACTATTTGGCACAACACGGAAAC
GGTGGAGTCACGCGAGTGCTGGGCGTTGAAAAGTTGAGAAAACGATATGG
AACGCACGAAGCCAGACGTGAGCTAAGTACAATGTACGATGTGTTTCTCG
TAGATCAAAGGGTGGCTCCAATGATGCCAAACTTGTTGGGAAACGCTTTC
CTCCAGAAGAGAAGCATGCCTCTTGCAGTGGATATGAAAAAAGACGTTGT
AGCTGCAATACGAAGAACTTTGACAAGTACGTCATTTGCTCCGAGACAGG
GGACTTGCACCAACGTTAAAATTGGGAGGCTTGACTTCGAGGAAGAGCAA
CTTGTTGATAATGCTTTACTGGCTGTTGATGGAATTGTTCGACGCTGCGG
AGGGGGGTGGGATGATATTCAATCGTTCAGTTTGAAAACTAGTCGCTCTC
CTGCTATTCAAATTTATTTGTCGCTTCCTGGAGAACAGGGCCTGGAGAAG
GATGCAGACAAAGTGAAGAAAGCGAAGAGCCACGACGAGAAAATTGTATC
GAATGGACCAAGAAAGGGGAGTGAAAATGTGTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1063389..1064372+

>Gchil9030.t1 ID=Gchil9030.t1|Name=Gchil9030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00004370_pilon:1063389..1064372+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTAAGCGTCGTCGACAGCAACAGAACGCTGTCAAGAATGTTGAAAC
TTCCTCCAAGCGAATACCGCTCGCGACGCTCGAGTCGGCTGTAAGTGTAC
TGCTCAGAGACGCTGTTCAGTTTGAAACAAAGCGAAATGAAACGTTGATA
AAGGCGGGTGAGAACGTAGACGATTTACTACGACCAGACGGAGACTTTCA
TTTGGTGGTTACGTTCAAGTTTCCACCGGTCAAGTCCAAGTTGCGACCGG
TTCCAATTGCTCTGAAGCATTCGTTGTGGAAAGAAGGAGAACATGAAGTT
TGTCTGTTTGTAAAGGACCCGCAACGTCTTGTGAAGGACTATTTGGCACA
ACACGGAAACGGTGGAGTCACGCGAGTGCTGGGCGTTGAAAAGTTGAGAA
AACGATATGGAACGCACGAAGCCAGACGTGAGCTAAGTACAATGTACGAT
GTGTTTCTCGTAGATCAAAGGGTGGCTCCAATGATGCCAAACTTGTTGGG
AAACGCTTTCCTCCAGAAGAGAAGCATGCCTCTTGCAGTGGATATGAAAA
AAGACGTTGTAGCTGCAATACGAAGAACTTTGACAAGTACGTCATTTGCT
CCGAGACAGGGGACTTGCACCAACGTTAAAATTGGGAGGCTTGACTTCGA
GGAAGAGCAACTTGTTGATAATGCTTTACTGGCTGTTGATGGAATTGTTC
GACGCTGCGGAGGGGGGTGGGATGATATTCAATCGTTCAGTTTGAAAACT
AGTCGCTCTCCTGCTATTCAAATTTATTTGTCGCTTCCTGGAGAACAGGG
CCTGGAGAAGGATGCAGACAAAGTGAAGAAAGCGAAGAGCCACGACGAGA
AAATTGTATCGAATGGACCAAGAAAGGGGAGTGAAAATGTGTAA
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