Gchil9021.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9021.t1
Unique NameGchil9021.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1039226..1039930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO98416
PFAMstRNA_edit
Max annot lvl3041|Chlorophyta
Evalue5.58e-33
EggNOG OGs28KZ5@1|root,2QTG1@2759|Eukaryota,37IZT@33090|Viridiplantae,34KUZ@3041|Chlorophyta
DescriptionAminoacyl-tRNA editing domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9021Gchil9021Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1039226..1039930 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9021.t1.stop1Gchil9021.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1039226..1039228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9021.t1.CDS1Gchil9021.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1039226..1039930 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9021.t1.exon1Gchil9021.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1039226..1039930 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9021.t1.start1Gchil9021.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1039928..1039930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9021.t1Gchil9021.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1039226..1039930 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9021.t1 ID=Gchil9021.t1|Name=Gchil9021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=235bp
MTRRSSFDEALKDLDARVASLEKRENKGNRRTALKSKISGPPEAIDPFAN
HIRVLALAAGFRDIRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVME
NTRHEGPSDASHPTTSRYLCCVVPYFAKIDSDKLRASIRSMFSDLGLPTP
SLKAFNYRLGEDCIGVTGYVPNGVTPLGLSTPMPVVVAKQISELRPEEFW
LGAGEVSLKWRVLLPEFFSAFNPFVIDFVNKDDN*
back to top

spliced messenger RNA

>Gchil9021.t1 ID=Gchil9021.t1|Name=Gchil9021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00004370_pilon:1039226..1039930- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGAAGGTCAAGTTTCGATGAGGCGCTGAAAGACTTGGATGCGCG
TGTTGCTAGTCTTGAGAAAAGGGAGAACAAGGGAAATCGAAGGACTGCTC
TGAAAAGCAAGATAAGCGGGCCCCCGGAAGCAATTGACCCATTCGCAAAC
CATATCCGTGTTCTTGCTTTGGCTGCAGGCTTCAGGGATATAAGACTCGT
GCGATGTCCGGATCCATACTATAGCTGGACTCTTGAAAAGCGTCGTGCCT
ATTTGAACGCCCCTGCAATCGCACATCTCACGAAGTCGATTGTCATGGAA
AACACTCGCCATGAAGGACCTTCAGATGCTTCACATCCAACAACATCACG
CTATCTATGTTGTGTTGTTCCGTACTTCGCAAAAATTGATTCCGATAAGC
TTCGCGCTTCAATTCGCTCCATGTTCTCTGATCTTGGATTACCTACTCCA
AGCTTAAAGGCGTTTAACTATCGTTTAGGAGAAGATTGCATTGGGGTAAC
TGGCTATGTCCCAAATGGCGTCACTCCACTTGGTTTGTCAACGCCTATGC
CAGTTGTTGTCGCAAAGCAAATATCGGAGCTACGTCCTGAAGAGTTCTGG
CTTGGTGCAGGAGAGGTTTCTTTGAAATGGCGCGTGCTTCTTCCAGAGTT
TTTCAGTGCGTTTAACCCATTTGTTATTGATTTCGTTAACAAAGACGACA
ACTGA
back to top

protein sequence of Gchil9021.t1

>Gchil9021.t1 ID=Gchil9021.t1|Name=Gchil9021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=235bp
MTRRSSFDEALKDLDARVASLEKRENKGNRRTALKSKISGPPEAIDPFAN
HIRVLALAAGFRDIRLVRCPDPYYSWTLEKRRAYLNAPAIAHLTKSIVME
NTRHEGPSDASHPTTSRYLCCVVPYFAKIDSDKLRASIRSMFSDLGLPTP
SLKAFNYRLGEDCIGVTGYVPNGVTPLGLSTPMPVVVAKQISELRPEEFW
LGAGEVSLKWRVLLPEFFSAFNPFVIDFVNKDDN*
back to top

mRNA from alignment at tig00004370_pilon:1039226..1039930-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9021.t1 ID=Gchil9021.t1|Name=Gchil9021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00004370_pilon:1039226..1039930- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCGAAGGTCAAGTTTCGATGAGGCGCTGAAAGACTTGGATGCGCG
TGTTGCTAGTCTTGAGAAAAGGGAGAACAAGGGAAATCGAAGGACTGCTC
TGAAAAGCAAGATAAGCGGGCCCCCGGAAGCAATTGACCCATTCGCAAAC
CATATCCGTGTTCTTGCTTTGGCTGCAGGCTTCAGGGATATAAGACTCGT
GCGATGTCCGGATCCATACTATAGCTGGACTCTTGAAAAGCGTCGTGCCT
ATTTGAACGCCCCTGCAATCGCACATCTCACGAAGTCGATTGTCATGGAA
AACACTCGCCATGAAGGACCTTCAGATGCTTCACATCCAACAACATCACG
CTATCTATGTTGTGTTGTTCCGTACTTCGCAAAAATTGATTCCGATAAGC
TTCGCGCTTCAATTCGCTCCATGTTCTCTGATCTTGGATTACCTACTCCA
AGCTTAAAGGCGTTTAACTATCGTTTAGGAGAAGATTGCATTGGGGTAAC
TGGCTATGTCCCAAATGGCGTCACTCCACTTGGTTTGTCAACGCCTATGC
CAGTTGTTGTCGCAAAGCAAATATCGGAGCTACGTCCTGAAGAGTTCTGG
CTTGGTGCAGGAGAGGTTTCTTTGAAATGGCGCGTGCTTCTTCCAGAGTT
TTTCAGTGCGTTTAACCCATTTGTTATTGATTTCGTTAACAAAGACGACA
ACTGA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:1039226..1039930-

>Gchil9021.t1 ID=Gchil9021.t1|Name=Gchil9021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00004370_pilon:1039226..1039930- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCGAAGGTCAAGTTTCGATGAGGCGCTGAAAGACTTGGATGCGCG
TGTTGCTAGTCTTGAGAAAAGGGAGAACAAGGGAAATCGAAGGACTGCTC
TGAAAAGCAAGATAAGCGGGCCCCCGGAAGCAATTGACCCATTCGCAAAC
CATATCCGTGTTCTTGCTTTGGCTGCAGGCTTCAGGGATATAAGACTCGT
GCGATGTCCGGATCCATACTATAGCTGGACTCTTGAAAAGCGTCGTGCCT
ATTTGAACGCCCCTGCAATCGCACATCTCACGAAGTCGATTGTCATGGAA
AACACTCGCCATGAAGGACCTTCAGATGCTTCACATCCAACAACATCACG
CTATCTATGTTGTGTTGTTCCGTACTTCGCAAAAATTGATTCCGATAAGC
TTCGCGCTTCAATTCGCTCCATGTTCTCTGATCTTGGATTACCTACTCCA
AGCTTAAAGGCGTTTAACTATCGTTTAGGAGAAGATTGCATTGGGGTAAC
TGGCTATGTCCCAAATGGCGTCACTCCACTTGGTTTGTCAACGCCTATGC
CAGTTGTTGTCGCAAAGCAAATATCGGAGCTACGTCCTGAAGAGTTCTGG
CTTGGTGCAGGAGAGGTTTCTTTGAAATGGCGCGTGCTTCTTCCAGAGTT
TTTCAGTGCGTTTAACCCATTTGTTATTGATTTCGTTAACAAAGACGACA
ACTGA
back to top