Gchil9019.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9019.t1
Unique Name	Gchil9019.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1032237..1033643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	349521.HCH_01214
PFAMs	DUF1298,WES_acyltransf
Max annot lvl	1236\|Gammaproteobacteria
Evalue	2.36e-34
EggNOG OGs	COG1020@1\|root,COG1020@2\|Bacteria,1N7HY@1224\|Proteobacteria,1RQJX@1236\|Gammaproteobacteria,1XN2U@135619\|Oceanospirillales
Description	Protein of unknown function (DUF1298)
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9019	Gchil9019	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1032237..1033643 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9019.t1.start1	Gchil9019.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1032237..1032239 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9019.t1.CDS1	Gchil9019.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1032237..1033643 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9019.t1.exon1	Gchil9019.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1032237..1033643 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9019.t1.stop1	Gchil9019.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1033641..1033643 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9019.t1	Gchil9019.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1032237..1033643 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1032237..1033643+
coding sequence from alignment at tig00004370_pilon:1032237..1033643+

mRNA sequence

>Gchil9019.t1 ID=Gchil9019.t1|Name=Gchil9019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=469bp
MTDIGHLAEKPPVPAESQSLPTKPPREQWQKLMPLERLMLDESIPTKQDI
ITVCFTISSIIARQDLKRTILPRFLSHPRFCSTLSQRRGVYGLHHDPTFN
AASPQIMSYHVNMEPAISDSLPEENQLHAFNACLNHIISTALDMNRPLWK
LHVFPKWSLSSETRAKSTTIVLRVHHSIADGIGLVKYFLSRVIDSDDSSC
SLLTPKSRCPQRSFFRACLETIDDMRKIATVPFFADPKTAFTQPEQNILN
HCAFIPPRPDIISDLKLAAKRRDATINDVLMAAFAGAVRKYFIDMGQDVN
KLTNFHTAMPFNRHVFDEFQEEDVSNQLAMLPVRLPIHVEASEERLKLCV
HDMNRLKRSYQPQFALTAMGLVAALPPFLRRMTWKRLSKSASVLFSNVPG
PMSTVRVGGIEVQSVYIFPPIDSNTTVNIAMFSYNNGLFVTVSGDANRLP
QPRNLIGYFNDELDTYLE*

spliced messenger RNA

>Gchil9019.t1 ID=Gchil9019.t1|Name=Gchil9019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00004370_pilon:1032237..1033643+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATATTGGTCACTTGGCTGAGAAGCCACCTGTTCCCGCTGAGAG
CCAATCGCTTCCCACGAAACCGCCACGTGAGCAATGGCAGAAACTCATGC
CGCTTGAAAGACTCATGCTTGACGAAAGCATACCAACAAAGCAGGACATC
ATCACCGTTTGCTTTACAATTTCGTCTATCATTGCCAGACAAGATTTGAA
ACGAACTATTTTGCCAAGATTTCTTTCACACCCTCGTTTTTGCAGCACTT
TGTCGCAACGAAGAGGTGTATACGGCTTGCATCATGATCCCACATTCAAC
GCTGCATCACCTCAAATCATGTCATACCATGTCAACATGGAGCCCGCTAT
ATCTGATTCTTTGCCTGAAGAGAATCAGTTACATGCGTTCAACGCTTGTC
TCAATCATATTATATCTACTGCTTTGGACATGAATCGCCCGCTATGGAAA
CTGCATGTGTTTCCGAAATGGTCTCTTAGTTCCGAGACGCGAGCCAAAAG
CACAACTATTGTTCTCCGAGTACATCATTCTATTGCCGATGGAATAGGGC
TTGTGAAATATTTTCTCTCACGCGTTATTGACTCAGATGACTCGTCATGC
TCACTGCTAACCCCAAAATCAAGATGTCCGCAGCGAAGCTTTTTCCGGGC
TTGTCTTGAGACAATAGATGACATGAGAAAAATAGCAACAGTTCCATTCT
TTGCAGACCCAAAAACAGCTTTCACACAACCCGAGCAGAATATTCTTAAT
CATTGTGCATTTATTCCGCCACGACCTGATATCATTTCTGATTTGAAGCT
CGCCGCGAAACGGAGAGATGCCACAATTAACGATGTTCTGATGGCCGCAT
TTGCAGGCGCTGTACGCAAGTATTTCATTGACATGGGCCAGGATGTCAAC
AAACTTACTAACTTCCATACGGCTATGCCGTTCAACAGGCACGTGTTTGA
CGAGTTTCAAGAAGAAGACGTTTCAAACCAACTTGCAATGTTACCTGTGC
GGCTTCCCATTCATGTTGAGGCTTCGGAAGAAAGGCTCAAGCTTTGTGTA
CATGATATGAATCGACTGAAGCGAAGCTACCAACCGCAGTTTGCCTTAAC
GGCAATGGGTTTGGTAGCGGCTTTGCCACCTTTCTTGAGACGTATGACTT
GGAAACGTCTCAGCAAATCTGCTAGTGTTTTGTTTTCGAATGTACCTGGT
CCCATGTCTACAGTTCGTGTTGGCGGAATCGAAGTACAAAGCGTGTACAT
ATTTCCGCCAATTGATTCGAATACGACGGTGAATATCGCTATGTTCTCAT
ACAATAATGGATTGTTTGTCACCGTCTCTGGAGATGCGAATCGATTGCCG
CAGCCGCGAAACTTAATCGGATATTTTAATGACGAACTCGACACGTACTT
GGAGTGA

protein sequence of Gchil9019.t1

>Gchil9019.t1 ID=Gchil9019.t1|Name=Gchil9019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=469bp
MTDIGHLAEKPPVPAESQSLPTKPPREQWQKLMPLERLMLDESIPTKQDI
ITVCFTISSIIARQDLKRTILPRFLSHPRFCSTLSQRRGVYGLHHDPTFN
AASPQIMSYHVNMEPAISDSLPEENQLHAFNACLNHIISTALDMNRPLWK
LHVFPKWSLSSETRAKSTTIVLRVHHSIADGIGLVKYFLSRVIDSDDSSC
SLLTPKSRCPQRSFFRACLETIDDMRKIATVPFFADPKTAFTQPEQNILN
HCAFIPPRPDIISDLKLAAKRRDATINDVLMAAFAGAVRKYFIDMGQDVN
KLTNFHTAMPFNRHVFDEFQEEDVSNQLAMLPVRLPIHVEASEERLKLCV
HDMNRLKRSYQPQFALTAMGLVAALPPFLRRMTWKRLSKSASVLFSNVPG
PMSTVRVGGIEVQSVYIFPPIDSNTTVNIAMFSYNNGLFVTVSGDANRLP
QPRNLIGYFNDELDTYLE*

mRNA from alignment at tig00004370_pilon:1032237..1033643+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9019.t1 ID=Gchil9019.t1|Name=Gchil9019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00004370_pilon:1032237..1033643+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGATATTGGTCACTTGGCTGAGAAGCCACCTGTTCCCGCTGAGAG
CCAATCGCTTCCCACGAAACCGCCACGTGAGCAATGGCAGAAACTCATGC
CGCTTGAAAGACTCATGCTTGACGAAAGCATACCAACAAAGCAGGACATC
ATCACCGTTTGCTTTACAATTTCGTCTATCATTGCCAGACAAGATTTGAA
ACGAACTATTTTGCCAAGATTTCTTTCACACCCTCGTTTTTGCAGCACTT
TGTCGCAACGAAGAGGTGTATACGGCTTGCATCATGATCCCACATTCAAC
GCTGCATCACCTCAAATCATGTCATACCATGTCAACATGGAGCCCGCTAT
ATCTGATTCTTTGCCTGAAGAGAATCAGTTACATGCGTTCAACGCTTGTC
TCAATCATATTATATCTACTGCTTTGGACATGAATCGCCCGCTATGGAAA
CTGCATGTGTTTCCGAAATGGTCTCTTAGTTCCGAGACGCGAGCCAAAAG
CACAACTATTGTTCTCCGAGTACATCATTCTATTGCCGATGGAATAGGGC
TTGTGAAATATTTTCTCTCACGCGTTATTGACTCAGATGACTCGTCATGC
TCACTGCTAACCCCAAAATCAAGATGTCCGCAGCGAAGCTTTTTCCGGGC
TTGTCTTGAGACAATAGATGACATGAGAAAAATAGCAACAGTTCCATTCT
TTGCAGACCCAAAAACAGCTTTCACACAACCCGAGCAGAATATTCTTAAT
CATTGTGCATTTATTCCGCCACGACCTGATATCATTTCTGATTTGAAGCT
CGCCGCGAAACGGAGAGATGCCACAATTAACGATGTTCTGATGGCCGCAT
TTGCAGGCGCTGTACGCAAGTATTTCATTGACATGGGCCAGGATGTCAAC
AAACTTACTAACTTCCATACGGCTATGCCGTTCAACAGGCACGTGTTTGA
CGAGTTTCAAGAAGAAGACGTTTCAAACCAACTTGCAATGTTACCTGTGC
GGCTTCCCATTCATGTTGAGGCTTCGGAAGAAAGGCTCAAGCTTTGTGTA
CATGATATGAATCGACTGAAGCGAAGCTACCAACCGCAGTTTGCCTTAAC
GGCAATGGGTTTGGTAGCGGCTTTGCCACCTTTCTTGAGACGTATGACTT
GGAAACGTCTCAGCAAATCTGCTAGTGTTTTGTTTTCGAATGTACCTGGT
CCCATGTCTACAGTTCGTGTTGGCGGAATCGAAGTACAAAGCGTGTACAT
ATTTCCGCCAATTGATTCGAATACGACGGTGAATATCGCTATGTTCTCAT
ACAATAATGGATTGTTTGTCACCGTCTCTGGAGATGCGAATCGATTGCCG
CAGCCGCGAAACTTAATCGGATATTTTAATGACGAACTCGACACGTACTT
GGAGTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:1032237..1033643+

>Gchil9019.t1 ID=Gchil9019.t1|Name=Gchil9019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00004370_pilon:1032237..1033643+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGATATTGGTCACTTGGCTGAGAAGCCACCTGTTCCCGCTGAGAG
CCAATCGCTTCCCACGAAACCGCCACGTGAGCAATGGCAGAAACTCATGC
CGCTTGAAAGACTCATGCTTGACGAAAGCATACCAACAAAGCAGGACATC
ATCACCGTTTGCTTTACAATTTCGTCTATCATTGCCAGACAAGATTTGAA
ACGAACTATTTTGCCAAGATTTCTTTCACACCCTCGTTTTTGCAGCACTT
TGTCGCAACGAAGAGGTGTATACGGCTTGCATCATGATCCCACATTCAAC
GCTGCATCACCTCAAATCATGTCATACCATGTCAACATGGAGCCCGCTAT
ATCTGATTCTTTGCCTGAAGAGAATCAGTTACATGCGTTCAACGCTTGTC
TCAATCATATTATATCTACTGCTTTGGACATGAATCGCCCGCTATGGAAA
CTGCATGTGTTTCCGAAATGGTCTCTTAGTTCCGAGACGCGAGCCAAAAG
CACAACTATTGTTCTCCGAGTACATCATTCTATTGCCGATGGAATAGGGC
TTGTGAAATATTTTCTCTCACGCGTTATTGACTCAGATGACTCGTCATGC
TCACTGCTAACCCCAAAATCAAGATGTCCGCAGCGAAGCTTTTTCCGGGC
TTGTCTTGAGACAATAGATGACATGAGAAAAATAGCAACAGTTCCATTCT
TTGCAGACCCAAAAACAGCTTTCACACAACCCGAGCAGAATATTCTTAAT
CATTGTGCATTTATTCCGCCACGACCTGATATCATTTCTGATTTGAAGCT
CGCCGCGAAACGGAGAGATGCCACAATTAACGATGTTCTGATGGCCGCAT
TTGCAGGCGCTGTACGCAAGTATTTCATTGACATGGGCCAGGATGTCAAC
AAACTTACTAACTTCCATACGGCTATGCCGTTCAACAGGCACGTGTTTGA
CGAGTTTCAAGAAGAAGACGTTTCAAACCAACTTGCAATGTTACCTGTGC
GGCTTCCCATTCATGTTGAGGCTTCGGAAGAAAGGCTCAAGCTTTGTGTA
CATGATATGAATCGACTGAAGCGAAGCTACCAACCGCAGTTTGCCTTAAC
GGCAATGGGTTTGGTAGCGGCTTTGCCACCTTTCTTGAGACGTATGACTT
GGAAACGTCTCAGCAAATCTGCTAGTGTTTTGTTTTCGAATGTACCTGGT
CCCATGTCTACAGTTCGTGTTGGCGGAATCGAAGTACAAAGCGTGTACAT
ATTTCCGCCAATTGATTCGAATACGACGGTGAATATCGCTATGTTCTCAT
ACAATAATGGATTGTTTGTCACCGTCTCTGGAGATGCGAATCGATTGCCG
CAGCCGCGAAACTTAATCGGATATTTTAATGACGAACTCGACACGTACTT
GGAGTGA