Gchil9017.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9017.t1
Unique Name	Gchil9017.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1025858..1026793 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo141633
PFAMs	DUF410
Max annot lvl	4776\|Peronosporales
Evalue	1.97e-30
EggNOG OGs	KOG3024@1\|root,KOG3024@2759\|Eukaryota,3Q87V@4776\|Peronosporales
Description	Protein of unknown function (DUF410)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9017	Gchil9017	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1025858..1026793 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9017.t1.start1	Gchil9017.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1025858..1025860 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9017.t1.CDS1	Gchil9017.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1025858..1026793 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9017.t1.exon1	Gchil9017.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1025858..1026793 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9017.t1.stop1	Gchil9017.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1026791..1026793 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9017.t1	Gchil9017.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1025858..1026793 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1025858..1026793+
coding sequence from alignment at tig00004370_pilon:1025858..1026793+

mRNA sequence

>Gchil9017.t1 ID=Gchil9017.t1|Name=Gchil9017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp
MASIKSLQRRYERSVASGDYYGAEQACMMMHHRLTQSKNQAPEDIEKALS
VLLDASLTLLSKEQAQAGSALGLAAVRHYVEYKKTVTDESVSALTKIADA
YDPNAGNDVEVRREKLRFLKAALAWSGREDCSGFTNGHATLNALTARAAA
EVGNYELSQQLYIYSDAPEEAASFLYKYAKEHTNVDEHGLALTRVLVRYL
GSENLKDACVVRGKFAELAGWTSIESGSDGTKNPPLANFCELLLKICQLE
RAAAPLFQKICRMYEPELNRDESLSPILTKLGTKYFGIQPPQPSGMAGMM
SSMLRGMMGPS*

spliced messenger RNA

>Gchil9017.t1 ID=Gchil9017.t1|Name=Gchil9017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00004370_pilon:1025858..1026793+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCATAAAGAGTTTGCAAAGACGTTATGAGAGAAGCGTTGCAAG
CGGAGATTACTATGGCGCGGAGCAAGCCTGTATGATGATGCATCATCGAC
TTACGCAAAGTAAGAACCAAGCTCCTGAAGATATCGAAAAAGCGCTTTCT
GTCCTTCTTGACGCCTCTCTCACTTTGCTTTCGAAGGAACAAGCTCAGGC
TGGCTCCGCTCTTGGTTTGGCGGCTGTGCGACATTATGTAGAGTATAAGA
AAACAGTTACCGATGAATCTGTGTCCGCTCTCACGAAGATCGCGGATGCG
TACGATCCTAACGCGGGAAACGATGTTGAAGTTCGCCGAGAGAAGCTGAG
ATTTTTGAAGGCAGCCTTGGCTTGGTCTGGAAGGGAGGATTGTTCTGGTT
TCACGAATGGTCATGCTACTCTCAACGCCTTGACTGCTCGAGCTGCCGCT
GAGGTGGGCAACTACGAATTGTCTCAGCAATTGTATATATATTCGGATGC
ACCAGAGGAGGCTGCTTCGTTTTTGTACAAGTATGCGAAAGAGCACACCA
ACGTTGATGAGCATGGTTTGGCTCTCACGCGTGTTCTCGTAAGATACCTA
GGGTCCGAAAACCTGAAGGATGCGTGCGTTGTACGAGGTAAGTTCGCAGA
ACTCGCTGGATGGACCTCCATTGAAAGTGGGAGCGATGGAACGAAGAATC
CTCCACTGGCAAACTTCTGTGAGCTGCTTCTGAAGATATGTCAGTTAGAG
AGAGCTGCTGCACCTTTATTCCAAAAGATATGTCGCATGTACGAGCCAGA
GCTGAACAGAGACGAAAGCTTATCGCCCATTCTCACAAAACTAGGCACCA
AGTACTTTGGGATTCAACCGCCGCAGCCGAGTGGTATGGCCGGCATGATG
AGCAGCATGCTACGCGGCATGATGGGCCCAAGCTGA

protein sequence of Gchil9017.t1

>Gchil9017.t1 ID=Gchil9017.t1|Name=Gchil9017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MASIKSLQRRYERSVASGDYYGAEQACMMMHHRLTQSKNQAPEDIEKALS
VLLDASLTLLSKEQAQAGSALGLAAVRHYVEYKKTVTDESVSALTKIADA
YDPNAGNDVEVRREKLRFLKAALAWSGREDCSGFTNGHATLNALTARAAA
EVGNYELSQQLYIYSDAPEEAASFLYKYAKEHTNVDEHGLALTRVLVRYL
GSENLKDACVVRGKFAELAGWTSIESGSDGTKNPPLANFCELLLKICQLE
RAAAPLFQKICRMYEPELNRDESLSPILTKLGTKYFGIQPPQPSGMAGMM
SSMLRGMMGPS*

mRNA from alignment at tig00004370_pilon:1025858..1026793+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9017.t1 ID=Gchil9017.t1|Name=Gchil9017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00004370_pilon:1025858..1026793+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTCCATAAAGAGTTTGCAAAGACGTTATGAGAGAAGCGTTGCAAG
CGGAGATTACTATGGCGCGGAGCAAGCCTGTATGATGATGCATCATCGAC
TTACGCAAAGTAAGAACCAAGCTCCTGAAGATATCGAAAAAGCGCTTTCT
GTCCTTCTTGACGCCTCTCTCACTTTGCTTTCGAAGGAACAAGCTCAGGC
TGGCTCCGCTCTTGGTTTGGCGGCTGTGCGACATTATGTAGAGTATAAGA
AAACAGTTACCGATGAATCTGTGTCCGCTCTCACGAAGATCGCGGATGCG
TACGATCCTAACGCGGGAAACGATGTTGAAGTTCGCCGAGAGAAGCTGAG
ATTTTTGAAGGCAGCCTTGGCTTGGTCTGGAAGGGAGGATTGTTCTGGTT
TCACGAATGGTCATGCTACTCTCAACGCCTTGACTGCTCGAGCTGCCGCT
GAGGTGGGCAACTACGAATTGTCTCAGCAATTGTATATATATTCGGATGC
ACCAGAGGAGGCTGCTTCGTTTTTGTACAAGTATGCGAAAGAGCACACCA
ACGTTGATGAGCATGGTTTGGCTCTCACGCGTGTTCTCGTAAGATACCTA
GGGTCCGAAAACCTGAAGGATGCGTGCGTTGTACGAGGTAAGTTCGCAGA
ACTCGCTGGATGGACCTCCATTGAAAGTGGGAGCGATGGAACGAAGAATC
CTCCACTGGCAAACTTCTGTGAGCTGCTTCTGAAGATATGTCAGTTAGAG
AGAGCTGCTGCACCTTTATTCCAAAAGATATGTCGCATGTACGAGCCAGA
GCTGAACAGAGACGAAAGCTTATCGCCCATTCTCACAAAACTAGGCACCA
AGTACTTTGGGATTCAACCGCCGCAGCCGAGTGGTATGGCCGGCATGATG
AGCAGCATGCTACGCGGCATGATGGGCCCAAGCTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:1025858..1026793+

>Gchil9017.t1 ID=Gchil9017.t1|Name=Gchil9017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00004370_pilon:1025858..1026793+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTCCATAAAGAGTTTGCAAAGACGTTATGAGAGAAGCGTTGCAAG
CGGAGATTACTATGGCGCGGAGCAAGCCTGTATGATGATGCATCATCGAC
TTACGCAAAGTAAGAACCAAGCTCCTGAAGATATCGAAAAAGCGCTTTCT
GTCCTTCTTGACGCCTCTCTCACTTTGCTTTCGAAGGAACAAGCTCAGGC
TGGCTCCGCTCTTGGTTTGGCGGCTGTGCGACATTATGTAGAGTATAAGA
AAACAGTTACCGATGAATCTGTGTCCGCTCTCACGAAGATCGCGGATGCG
TACGATCCTAACGCGGGAAACGATGTTGAAGTTCGCCGAGAGAAGCTGAG
ATTTTTGAAGGCAGCCTTGGCTTGGTCTGGAAGGGAGGATTGTTCTGGTT
TCACGAATGGTCATGCTACTCTCAACGCCTTGACTGCTCGAGCTGCCGCT
GAGGTGGGCAACTACGAATTGTCTCAGCAATTGTATATATATTCGGATGC
ACCAGAGGAGGCTGCTTCGTTTTTGTACAAGTATGCGAAAGAGCACACCA
ACGTTGATGAGCATGGTTTGGCTCTCACGCGTGTTCTCGTAAGATACCTA
GGGTCCGAAAACCTGAAGGATGCGTGCGTTGTACGAGGTAAGTTCGCAGA
ACTCGCTGGATGGACCTCCATTGAAAGTGGGAGCGATGGAACGAAGAATC
CTCCACTGGCAAACTTCTGTGAGCTGCTTCTGAAGATATGTCAGTTAGAG
AGAGCTGCTGCACCTTTATTCCAAAAGATATGTCGCATGTACGAGCCAGA
GCTGAACAGAGACGAAAGCTTATCGCCCATTCTCACAAAACTAGGCACCA
AGTACTTTGGGATTCAACCGCCGCAGCCGAGTGGTATGGCCGGCATGATG
AGCAGCATGCTACGCGGCATGATGGGCCCAAGCTGA