Gchil9013.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9013.t1
Unique NameGchil9013.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length469
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:966169..967575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089550.ATTH01000001_gene357
PFAMsDUF1298,SCP2,WES_acyltransf
Max annot lvl976|Bacteroidetes
Evalue6.69e-31
EggNOG OGsCOG1020@1|root,COG1020@2|Bacteria,4NHDG@976|Bacteroidetes,1FJQY@1100069|Bacteroidetes Order II. Incertae sedis
DescriptionProtein of unknown function (DUF1298)
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9013Gchil9013Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 966169..967575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9013.t1.stop1Gchil9013.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 966169..966171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9013.t1.CDS1Gchil9013.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 966169..967575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9013.t1.exon1Gchil9013.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 966169..967575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9013.t1.start1Gchil9013.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 967573..967575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9013.t1Gchil9013.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 966169..967575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9013.t1 ID=Gchil9013.t1|Name=Gchil9013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=469bp
MSESVHRPQQLPERSSHQRRPSKQRRKKWQKLTPLERLMFDEHTPSKQDI
ISVCFTLSSILTVQDLQRTVLPRFLSHPRFCSTLSKRWGSFIFQPDALFT
ATSPQITSYHITVEPVVSASLSEQEKLRAFTSSLNHIMSTTLDSTRPLWK
LFMFPQWSLSPETRANSTTLVLRVHHSISDGIGLVKYFLSRVIDSDTPAA
KLSLSRPKRPHRSIIRVCADTMGDLKKSAFVLFRADQKTPFTQPMQNNVN
HCALLAPRPGIISELKLAAKKRNATINDILMASFAGSVRAYLADLGYNVD
TLRRFHTAMPFNRHLFDEFRDEDVSNQLAILPVLLPIYLEDAEERFKACV
REMNRVKRSLQPQLALAGMSVMTALPLTMRRVVWRHLSKSASVLFSNIPG
PVSKVSVDGAEVQSVYVFPPIDSNTTVNIAMFSYDNGLFVAVSGDANRLT
YPQSMIDHFSAELHMYLK*
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spliced messenger RNA

>Gchil9013.t1 ID=Gchil9013.t1|Name=Gchil9013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00004370_pilon:966169..967575- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGTCTGTCCACCGCCCTCAGCAACTTCCCGAACGAAGTTCCCA
TCAGCGTCGCCCTTCCAAGCAGCGTCGCAAAAAATGGCAGAAACTCACCC
CACTTGAACGCCTCATGTTTGACGAACACACCCCATCAAAACAGGACATA
ATTTCCGTTTGTTTCACGCTCTCTTCCATTCTTACCGTGCAAGATCTACA
ACGTACCGTTCTCCCAAGATTTCTATCACACCCTCGGTTCTGTAGCACTT
TGTCCAAACGCTGGGGCTCATTTATTTTTCAACCCGACGCGTTGTTTACC
GCCACATCCCCTCAAATAACTTCTTACCACATCACTGTTGAGCCCGTTGT
ATCTGCTTCTCTTTCCGAACAAGAGAAACTTCGTGCATTCACCTCAAGTC
TCAATCATATCATGTCAACTACTTTGGACAGCACCCGTCCCCTATGGAAG
CTGTTTATGTTTCCACAATGGTCGCTTTCTCCCGAAACGCGAGCAAACAG
CACAACCCTTGTGCTTCGAGTGCACCATTCAATTTCCGACGGAATCGGTC
TCGTGAAGTATTTTCTATCGCGAGTAATTGATTCAGACACTCCCGCAGCT
AAACTGTCCTTGTCGAGGCCAAAGCGTCCGCATCGCAGCATTATCCGCGT
GTGCGCTGACACCATGGGTGACTTGAAGAAATCTGCCTTTGTTTTATTTC
GCGCAGATCAAAAGACACCCTTCACTCAGCCCATGCAGAACAATGTCAAC
CACTGCGCGCTGCTTGCGCCACGACCTGGCATCATTTCTGAGTTAAAACT
TGCTGCCAAAAAGAGAAACGCCACTATAAATGATATTTTGATGGCTTCTT
TCGCTGGTTCTGTGCGTGCGTATCTAGCTGACTTGGGTTATAACGTCGAT
ACACTTCGCAGGTTTCATACAGCCATGCCATTTAACAGGCACTTATTTGA
TGAGTTTCGAGACGAAGATGTATCGAATCAGCTTGCAATTTTACCAGTAC
TTCTGCCAATTTACCTTGAAGATGCTGAAGAAAGGTTTAAAGCGTGTGTT
CGTGAGATGAACCGAGTGAAAAGAAGTTTGCAGCCGCAATTGGCATTGGC
TGGAATGAGCGTCATGACTGCTCTTCCGCTTACCATGAGACGGGTGGTTT
GGCGACATCTTAGTAAGTCTGCAAGCGTATTGTTTTCTAACATACCCGGT
CCTGTTTCCAAGGTTTCTGTCGACGGAGCAGAGGTGCAGAGTGTATATGT
GTTTCCTCCAATTGATTCGAACACCACTGTGAATATTGCCATGTTCTCGT
ATGATAATGGTTTGTTTGTTGCGGTTTCAGGAGATGCAAATCGATTAACA
TATCCGCAGAGTATGATAGATCATTTTAGTGCTGAACTTCACATGTACTT
AAAATAA
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protein sequence of Gchil9013.t1

>Gchil9013.t1 ID=Gchil9013.t1|Name=Gchil9013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=469bp
MSESVHRPQQLPERSSHQRRPSKQRRKKWQKLTPLERLMFDEHTPSKQDI
ISVCFTLSSILTVQDLQRTVLPRFLSHPRFCSTLSKRWGSFIFQPDALFT
ATSPQITSYHITVEPVVSASLSEQEKLRAFTSSLNHIMSTTLDSTRPLWK
LFMFPQWSLSPETRANSTTLVLRVHHSISDGIGLVKYFLSRVIDSDTPAA
KLSLSRPKRPHRSIIRVCADTMGDLKKSAFVLFRADQKTPFTQPMQNNVN
HCALLAPRPGIISELKLAAKKRNATINDILMASFAGSVRAYLADLGYNVD
TLRRFHTAMPFNRHLFDEFRDEDVSNQLAILPVLLPIYLEDAEERFKACV
REMNRVKRSLQPQLALAGMSVMTALPLTMRRVVWRHLSKSASVLFSNIPG
PVSKVSVDGAEVQSVYVFPPIDSNTTVNIAMFSYDNGLFVAVSGDANRLT
YPQSMIDHFSAELHMYLK*
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mRNA from alignment at tig00004370_pilon:966169..967575-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9013.t1 ID=Gchil9013.t1|Name=Gchil9013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00004370_pilon:966169..967575- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGAGTCTGTCCACCGCCCTCAGCAACTTCCCGAACGAAGTTCCCA
TCAGCGTCGCCCTTCCAAGCAGCGTCGCAAAAAATGGCAGAAACTCACCC
CACTTGAACGCCTCATGTTTGACGAACACACCCCATCAAAACAGGACATA
ATTTCCGTTTGTTTCACGCTCTCTTCCATTCTTACCGTGCAAGATCTACA
ACGTACCGTTCTCCCAAGATTTCTATCACACCCTCGGTTCTGTAGCACTT
TGTCCAAACGCTGGGGCTCATTTATTTTTCAACCCGACGCGTTGTTTACC
GCCACATCCCCTCAAATAACTTCTTACCACATCACTGTTGAGCCCGTTGT
ATCTGCTTCTCTTTCCGAACAAGAGAAACTTCGTGCATTCACCTCAAGTC
TCAATCATATCATGTCAACTACTTTGGACAGCACCCGTCCCCTATGGAAG
CTGTTTATGTTTCCACAATGGTCGCTTTCTCCCGAAACGCGAGCAAACAG
CACAACCCTTGTGCTTCGAGTGCACCATTCAATTTCCGACGGAATCGGTC
TCGTGAAGTATTTTCTATCGCGAGTAATTGATTCAGACACTCCCGCAGCT
AAACTGTCCTTGTCGAGGCCAAAGCGTCCGCATCGCAGCATTATCCGCGT
GTGCGCTGACACCATGGGTGACTTGAAGAAATCTGCCTTTGTTTTATTTC
GCGCAGATCAAAAGACACCCTTCACTCAGCCCATGCAGAACAATGTCAAC
CACTGCGCGCTGCTTGCGCCACGACCTGGCATCATTTCTGAGTTAAAACT
TGCTGCCAAAAAGAGAAACGCCACTATAAATGATATTTTGATGGCTTCTT
TCGCTGGTTCTGTGCGTGCGTATCTAGCTGACTTGGGTTATAACGTCGAT
ACACTTCGCAGGTTTCATACAGCCATGCCATTTAACAGGCACTTATTTGA
TGAGTTTCGAGACGAAGATGTATCGAATCAGCTTGCAATTTTACCAGTAC
TTCTGCCAATTTACCTTGAAGATGCTGAAGAAAGGTTTAAAGCGTGTGTT
CGTGAGATGAACCGAGTGAAAAGAAGTTTGCAGCCGCAATTGGCATTGGC
TGGAATGAGCGTCATGACTGCTCTTCCGCTTACCATGAGACGGGTGGTTT
GGCGACATCTTAGTAAGTCTGCAAGCGTATTGTTTTCTAACATACCCGGT
CCTGTTTCCAAGGTTTCTGTCGACGGAGCAGAGGTGCAGAGTGTATATGT
GTTTCCTCCAATTGATTCGAACACCACTGTGAATATTGCCATGTTCTCGT
ATGATAATGGTTTGTTTGTTGCGGTTTCAGGAGATGCAAATCGATTAACA
TATCCGCAGAGTATGATAGATCATTTTAGTGCTGAACTTCACATGTACTT
AAAATAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:966169..967575-

>Gchil9013.t1 ID=Gchil9013.t1|Name=Gchil9013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00004370_pilon:966169..967575- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGAGTCTGTCCACCGCCCTCAGCAACTTCCCGAACGAAGTTCCCA
TCAGCGTCGCCCTTCCAAGCAGCGTCGCAAAAAATGGCAGAAACTCACCC
CACTTGAACGCCTCATGTTTGACGAACACACCCCATCAAAACAGGACATA
ATTTCCGTTTGTTTCACGCTCTCTTCCATTCTTACCGTGCAAGATCTACA
ACGTACCGTTCTCCCAAGATTTCTATCACACCCTCGGTTCTGTAGCACTT
TGTCCAAACGCTGGGGCTCATTTATTTTTCAACCCGACGCGTTGTTTACC
GCCACATCCCCTCAAATAACTTCTTACCACATCACTGTTGAGCCCGTTGT
ATCTGCTTCTCTTTCCGAACAAGAGAAACTTCGTGCATTCACCTCAAGTC
TCAATCATATCATGTCAACTACTTTGGACAGCACCCGTCCCCTATGGAAG
CTGTTTATGTTTCCACAATGGTCGCTTTCTCCCGAAACGCGAGCAAACAG
CACAACCCTTGTGCTTCGAGTGCACCATTCAATTTCCGACGGAATCGGTC
TCGTGAAGTATTTTCTATCGCGAGTAATTGATTCAGACACTCCCGCAGCT
AAACTGTCCTTGTCGAGGCCAAAGCGTCCGCATCGCAGCATTATCCGCGT
GTGCGCTGACACCATGGGTGACTTGAAGAAATCTGCCTTTGTTTTATTTC
GCGCAGATCAAAAGACACCCTTCACTCAGCCCATGCAGAACAATGTCAAC
CACTGCGCGCTGCTTGCGCCACGACCTGGCATCATTTCTGAGTTAAAACT
TGCTGCCAAAAAGAGAAACGCCACTATAAATGATATTTTGATGGCTTCTT
TCGCTGGTTCTGTGCGTGCGTATCTAGCTGACTTGGGTTATAACGTCGAT
ACACTTCGCAGGTTTCATACAGCCATGCCATTTAACAGGCACTTATTTGA
TGAGTTTCGAGACGAAGATGTATCGAATCAGCTTGCAATTTTACCAGTAC
TTCTGCCAATTTACCTTGAAGATGCTGAAGAAAGGTTTAAAGCGTGTGTT
CGTGAGATGAACCGAGTGAAAAGAAGTTTGCAGCCGCAATTGGCATTGGC
TGGAATGAGCGTCATGACTGCTCTTCCGCTTACCATGAGACGGGTGGTTT
GGCGACATCTTAGTAAGTCTGCAAGCGTATTGTTTTCTAACATACCCGGT
CCTGTTTCCAAGGTTTCTGTCGACGGAGCAGAGGTGCAGAGTGTATATGT
GTTTCCTCCAATTGATTCGAACACCACTGTGAATATTGCCATGTTCTCGT
ATGATAATGGTTTGTTTGTTGCGGTTTCAGGAGATGCAAATCGATTAACA
TATCCGCAGAGTATGATAGATCATTTTAGTGCTGAACTTCACATGTACTT
AAAATAA
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