Gchil9012.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9012.t1
Unique NameGchil9012.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:962809..964734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERM94685
PFAMsDUF3381,FtsJ,Spb1_C
Max annot lvl35493|Streptophyta
KEGG koko:K14857
GOsGO:0000154,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0030684,GO:0030687,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:1990904
Evalue7.03e-27
EggNOG OGsCOG0293@1|root,KOG1098@2759|Eukaryota,37N9V@33090|Viridiplantae,3GCX8@35493|Streptophyta
Descriptionmethyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9012Gchil9012Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 962809..964734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9012.t1Gchil9012.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 962809..964734 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9012.t1.stop1Gchil9012.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 962809..962811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9012.t1.CDS1Gchil9012.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 962809..963939 -
Gchil9012.t1.CDS2Gchil9012.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 964714..964734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9012.t1.exon1Gchil9012.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 962809..963939 -
Gchil9012.t1.exon2Gchil9012.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 964714..964734 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9012.t1.intron1Gchil9012.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 963940..964713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9012.t1.start1Gchil9012.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 964732..964734 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9012.t1 ID=Gchil9012.t1|Name=Gchil9012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp
MAGDGLMIKGNRWQARRSNIKEDAQEEKAGDETNTSRKQVTLEVDSSESS
SEEDPSDDEFHLPKKASNSREASLWFSQPVFQDIPGFYSDSESEQGSRER
EVGVGLAEDGDATDGMGEAHAGNFAKAARKEALVIAEGVEKRLKEGGDAY
EVVPMEGGTASGSFKRKTGKNNDELSDSSFHSSDYDTDEKAEMVAIGKRM
RQSKKEATEVLDDAYNRYTFDDPCFLPRWFADSDPVYRTRQPPVTKEQVS
EMKEYIKSLEAMPSKKEREAKARKRARIAKKMDAMKAKANSIAEQADVPA
SSRMRAIEDLYKKAMKSDKSGKKGKRKEYQVLKPNGRISVGKNIAKGRKS
GKGVRTVLVDKRMKADKRGLAKAQKKKGKARKG*
back to top

spliced messenger RNA

>Gchil9012.t1 ID=Gchil9012.t1|Name=Gchil9012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00004370_pilon:962809..964734- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGAGATGGGCTAATGATCAAAGGAAACAGGTGGCAAGCCAGGCG
CTCTAATATCAAGGAGGATGCACAGGAAGAAAAGGCGGGTGATGAAACCA
ATACCTCAAGGAAACAAGTGACTCTTGAAGTTGACTCGTCCGAATCAAGT
AGCGAGGAGGATCCAAGTGATGACGAGTTTCACCTTCCAAAGAAAGCGTC
CAATTCTCGAGAAGCTTCCCTATGGTTCTCGCAGCCAGTATTTCAAGACA
TTCCGGGGTTCTACTCAGACAGTGAATCTGAGCAAGGCTCTAGGGAAAGA
GAAGTTGGAGTAGGACTGGCCGAAGATGGTGACGCAACCGATGGAATGGG
AGAAGCTCATGCCGGGAACTTTGCAAAAGCAGCGCGAAAAGAAGCACTTG
TAATTGCAGAAGGTGTTGAGAAGCGATTGAAGGAAGGGGGTGATGCCTAT
GAAGTGGTTCCAATGGAAGGAGGAACGGCTTCTGGCTCTTTTAAGCGAAA
AACGGGAAAGAACAATGACGAACTGAGTGATTCATCGTTTCACTCATCTG
ATTATGACACCGATGAAAAGGCAGAGATGGTTGCTATCGGAAAGCGTATG
CGGCAATCAAAAAAGGAGGCAACCGAGGTCCTTGATGATGCGTACAACAG
ATATACATTCGACGATCCATGTTTCTTACCTCGTTGGTTTGCAGACTCGG
ACCCAGTGTATCGCACGAGGCAGCCACCCGTGACGAAGGAACAAGTAAGT
GAAATGAAAGAATACATCAAGTCCCTTGAAGCTATGCCTTCTAAGAAGGA
GAGAGAGGCCAAAGCCCGAAAGCGCGCTCGAATTGCCAAGAAGATGGATG
CCATGAAAGCGAAAGCTAATAGCATTGCAGAGCAGGCGGACGTTCCTGCA
AGCTCGAGAATGAGAGCAATTGAAGACTTGTACAAGAAGGCCATGAAGTC
TGACAAGAGCGGTAAGAAAGGAAAACGGAAGGAGTATCAGGTTTTGAAAC
CTAACGGTAGGATTTCAGTGGGGAAAAACATTGCAAAGGGAAGGAAAAGT
GGTAAAGGCGTCAGGACTGTTCTTGTGGACAAGAGGATGAAGGCTGACAA
GCGAGGGCTTGCAAAGGCACAGAAAAAGAAAGGAAAGGCTAGGAAGGGGT
AA
back to top

protein sequence of Gchil9012.t1

>Gchil9012.t1 ID=Gchil9012.t1|Name=Gchil9012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=384bp
MAGDGLMIKGNRWQARRSNIKEDAQEEKAGDETNTSRKQVTLEVDSSESS
SEEDPSDDEFHLPKKASNSREASLWFSQPVFQDIPGFYSDSESEQGSRER
EVGVGLAEDGDATDGMGEAHAGNFAKAARKEALVIAEGVEKRLKEGGDAY
EVVPMEGGTASGSFKRKTGKNNDELSDSSFHSSDYDTDEKAEMVAIGKRM
RQSKKEATEVLDDAYNRYTFDDPCFLPRWFADSDPVYRTRQPPVTKEQVS
EMKEYIKSLEAMPSKKEREAKARKRARIAKKMDAMKAKANSIAEQADVPA
SSRMRAIEDLYKKAMKSDKSGKKGKRKEYQVLKPNGRISVGKNIAKGRKS
GKGVRTVLVDKRMKADKRGLAKAQKKKGKARKG*
back to top

mRNA from alignment at tig00004370_pilon:962809..964734-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9012.t1 ID=Gchil9012.t1|Name=Gchil9012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1926bp|location=Sequence derived from alignment at tig00004370_pilon:962809..964734- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGGAGATGGGCTAATGGTAATTATCTGGCGGTCTTCCCAACGTGA
AATTTGTGCTCTGCTCCGTGATGACTGGAGGTGTTGCCGGATGGGGATAC
TTCACAGATCCCTTGTTTTGGACAATCAACGGCTGCAACCTCTCAATGCC
ACCCGTATGATGTTACCAAGTCTCAACTCAACCCCCTTCCTTCCTTGCGT
ACACACTCTACTCTGTACAACACCCGCCCAGGTTGGTTTGATAGAGCTGT
AAATGTGCAGCTTTTGGAACAGCAATTTACCTATGATAACGCTCGCCGGA
AATGCTCTACATCTATGGGCGACAACATGTTCCAGCCTTCTTTTCCACGA
AGAGTATCTGTGTGAATATGGGCAAACACATCAATAAGAAAGAACAAAAA
GCGGGTTAGAGACACGGTGCAATGGTAACAACAATGATCAACAATACGCC
TCAGTCGTTATGGTTGATGTCGAACGAAAGTTCGGACGGTCGTCCTATCG
CTAGTTGAGCGATTTTCCGATAGAGCTAATACAAGACACATCACTGGCGT
CGAACAACTGCGTGCAACTACTCACCTCTCAAGTATGCGAGAAAACATAG
GGAAAAGACATGAAATATGTCCCATGTGGTAAATGGCGAGTAGCAGGGAG
GATGCGTTCAATAAAAACCTTATGTGATCAACGGTTTGTTCTCGAGTTAA
CTTTTGTCACCTTCTTCACTTGTTTCTACTTCGCTTGTGTATAGACTCGT
CATCATCGACTTACTTAAGCCCGAGTTGAGTAAATATGAAAACAGATCAA
AGGAAACAGGTGGCAAGCCAGGCGCTCTAATATCAAGGAGGATGCACAGG
AAGAAAAGGCGGGTGATGAAACCAATACCTCAAGGAAACAAGTGACTCTT
GAAGTTGACTCGTCCGAATCAAGTAGCGAGGAGGATCCAAGTGATGACGA
GTTTCACCTTCCAAAGAAAGCGTCCAATTCTCGAGAAGCTTCCCTATGGT
TCTCGCAGCCAGTATTTCAAGACATTCCGGGGTTCTACTCAGACAGTGAA
TCTGAGCAAGGCTCTAGGGAAAGAGAAGTTGGAGTAGGACTGGCCGAAGA
TGGTGACGCAACCGATGGAATGGGAGAAGCTCATGCCGGGAACTTTGCAA
AAGCAGCGCGAAAAGAAGCACTTGTAATTGCAGAAGGTGTTGAGAAGCGA
TTGAAGGAAGGGGGTGATGCCTATGAAGTGGTTCCAATGGAAGGAGGAAC
GGCTTCTGGCTCTTTTAAGCGAAAAACGGGAAAGAACAATGACGAACTGA
GTGATTCATCGTTTCACTCATCTGATTATGACACCGATGAAAAGGCAGAG
ATGGTTGCTATCGGAAAGCGTATGCGGCAATCAAAAAAGGAGGCAACCGA
GGTCCTTGATGATGCGTACAACAGATATACATTCGACGATCCATGTTTCT
TACCTCGTTGGTTTGCAGACTCGGACCCAGTGTATCGCACGAGGCAGCCA
CCCGTGACGAAGGAACAAGTAAGTGAAATGAAAGAATACATCAAGTCCCT
TGAAGCTATGCCTTCTAAGAAGGAGAGAGAGGCCAAAGCCCGAAAGCGCG
CTCGAATTGCCAAGAAGATGGATGCCATGAAAGCGAAAGCTAATAGCATT
GCAGAGCAGGCGGACGTTCCTGCAAGCTCGAGAATGAGAGCAATTGAAGA
CTTGTACAAGAAGGCCATGAAGTCTGACAAGAGCGGTAAGAAAGGAAAAC
GGAAGGAGTATCAGGTTTTGAAACCTAACGGTAGGATTTCAGTGGGGAAA
AACATTGCAAAGGGAAGGAAAAGTGGTAAAGGCGTCAGGACTGTTCTTGT
GGACAAGAGGATGAAGGCTGACAAGCGAGGGCTTGCAAAGGCACAGAAAA
AGAAAGGAAAGGCTAGGAAGGGGTAA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:962809..964734-

>Gchil9012.t1 ID=Gchil9012.t1|Name=Gchil9012.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00004370_pilon:962809..964734- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGGAGATGGGCTAATGATCAAAGGAAACAGGTGGCAAGCCAGGCG
CTCTAATATCAAGGAGGATGCACAGGAAGAAAAGGCGGGTGATGAAACCA
ATACCTCAAGGAAACAAGTGACTCTTGAAGTTGACTCGTCCGAATCAAGT
AGCGAGGAGGATCCAAGTGATGACGAGTTTCACCTTCCAAAGAAAGCGTC
CAATTCTCGAGAAGCTTCCCTATGGTTCTCGCAGCCAGTATTTCAAGACA
TTCCGGGGTTCTACTCAGACAGTGAATCTGAGCAAGGCTCTAGGGAAAGA
GAAGTTGGAGTAGGACTGGCCGAAGATGGTGACGCAACCGATGGAATGGG
AGAAGCTCATGCCGGGAACTTTGCAAAAGCAGCGCGAAAAGAAGCACTTG
TAATTGCAGAAGGTGTTGAGAAGCGATTGAAGGAAGGGGGTGATGCCTAT
GAAGTGGTTCCAATGGAAGGAGGAACGGCTTCTGGCTCTTTTAAGCGAAA
AACGGGAAAGAACAATGACGAACTGAGTGATTCATCGTTTCACTCATCTG
ATTATGACACCGATGAAAAGGCAGAGATGGTTGCTATCGGAAAGCGTATG
CGGCAATCAAAAAAGGAGGCAACCGAGGTCCTTGATGATGCGTACAACAG
ATATACATTCGACGATCCATGTTTCTTACCTCGTTGGTTTGCAGACTCGG
ACCCAGTGTATCGCACGAGGCAGCCACCCGTGACGAAGGAACAAGTAAGT
GAAATGAAAGAATACATCAAGTCCCTTGAAGCTATGCCTTCTAAGAAGGA
GAGAGAGGCCAAAGCCCGAAAGCGCGCTCGAATTGCCAAGAAGATGGATG
CCATGAAAGCGAAAGCTAATAGCATTGCAGAGCAGGCGGACGTTCCTGCA
AGCTCGAGAATGAGAGCAATTGAAGACTTGTACAAGAAGGCCATGAAGTC
TGACAAGAGCGGTAAGAAAGGAAAACGGAAGGAGTATCAGGTTTTGAAAC
CTAACGGTAGGATTTCAGTGGGGAAAAACATTGCAAAGGGAAGGAAAAGT
GGTAAAGGCGTCAGGACTGTTCTTGTGGACAAGAGGATGAAGGCTGACAA
GCGAGGGCTTGCAAAGGCACAGAAAAAGAAAGGAAAGGCTAGGAAGGGGT
AA
back to top