Gchil9011.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9011.t1
Unique NameGchil9011.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:955643..956752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog50452.A0A087GPA7
Preferred nameUAH
PFAMsM20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl35493|Streptophyta
KEGG rclassRC00153,RC02798,RC02805
KEGG koko:K18151
KEGG ReactionR00469
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
GOsGO:0000255,GO:0000256,GO:0003674,GO:0003824,GO:0004848,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0010135,GO:0010136,GO:0012505,GO:0016787,GO:0016810,GO:0016813,GO:0017144,GO:0019439,GO:0034641,GO:0042737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043605,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Evalue2.23e-89
EggNOG OGsCOG0624@1|root,2QPR4@2759|Eukaryota,37N19@33090|Viridiplantae,3G9HT@35493|Streptophyta,3HVWQ@3699|Brassicales
EC3.5.1.116
DescriptionPeptidase family M20/M25/M40
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9011Gchil9011Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 955643..956752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9011.t1Gchil9011.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 955643..956752 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9011.t1.start1Gchil9011.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 955643..955645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9011.t1.CDS1Gchil9011.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 955643..956446 +
Gchil9011.t1.CDS2Gchil9011.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 956532..956567 +
Gchil9011.t1.CDS3Gchil9011.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 956636..956752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9011.t1.exon1Gchil9011.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 955643..956446 +
Gchil9011.t1.exon2Gchil9011.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 956532..956567 +
Gchil9011.t1.exon3Gchil9011.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 956636..956752 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9011.t1.intron1Gchil9011.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 956447..956531 +
Gchil9011.t1.intron2Gchil9011.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 956568..956635 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9011.t1.stop1Gchil9011.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 956750..956752 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9011.t1 ID=Gchil9011.t1|Name=Gchil9011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp
MKDAGLDVSQDAVGNIFGTWEGTTSLPGVLTGSHIDAIPHSGMYDGTLGV
VTAVEAVRALRQSGFSPQRSITVVMFTSEEPTRFGLSCIGSRLLVNALEK
NELDDLIDDTQTSFHSARIQAGYDGDIKSVPLQASSYSAFVELHIEQADV
LEKSGIDIGAVSNIAAPAAAQITFEGSGGHAGSLLMKYRNDAGLAAAQLA
LIVEKVALRRGEDCVATTGKLELFPGAVNSVPSMATMSLDIRDVDLKRRD
SALQEIEAEMMSIAIERNSNSDFTPPGWSLGGISHRPDEFVEEIDVHNGV
MVLAGVLQSLTGEEKTDL*
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spliced messenger RNA

>Gchil9011.t1 ID=Gchil9011.t1|Name=Gchil9011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00004370_pilon:955643..956752+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATGCTGGACTAGATGTTTCGCAAGATGCCGTTGGAAACATATT
TGGAACGTGGGAAGGGACCACTTCTTTGCCAGGGGTGCTAACAGGCTCAC
ACATCGACGCTATCCCACACAGTGGAATGTATGACGGTACATTGGGCGTT
GTTACAGCTGTTGAAGCTGTTCGTGCGTTGCGCCAGTCTGGATTCTCTCC
ACAGCGTTCCATTACGGTAGTCATGTTCACATCTGAAGAGCCTACTCGTT
TTGGTTTAAGTTGCATCGGAAGTCGCTTATTAGTGAACGCCCTTGAGAAA
AACGAGCTTGATGATCTCATTGACGATACACAGACCTCTTTTCACTCTGC
AAGAATACAAGCCGGATACGATGGCGATATCAAGTCCGTGCCTTTACAGG
CTTCTTCATATTCTGCGTTTGTAGAATTGCATATTGAGCAGGCGGACGTT
CTAGAAAAGTCAGGCATCGATATTGGTGCAGTTTCCAACATAGCTGCACC
AGCAGCTGCACAAATTACATTTGAAGGTAGTGGTGGTCATGCGGGGAGCT
TGTTAATGAAATATCGGAATGATGCAGGTCTTGCAGCAGCACAATTGGCT
CTAATCGTCGAAAAGGTTGCCTTGAGAAGAGGGGAAGATTGTGTTGCAAC
TACTGGGAAATTGGAGCTGTTTCCAGGTGCAGTTAATAGTGTGCCAAGCA
TGGCTACAATGTCCCTGGATATTAGGGATGTAGATTTGAAACGGAGAGAT
TCCGCTTTACAAGAAATTGAAGCCGAGATGATGTCCATAGCTATAGAAAG
AAACAGCAACTCGGACTTCACACCACCAGGATGGTCTCTCGGTGGGATCA
GTCATCGACCGGATGAATTCGTAGAAGAAATTGATGTGCACAACGGAGTG
ATGGTGTTGGCCGGAGTCTTGCAAAGCCTAACTGGTGAGGAAAAAACAGA
TCTTTAG
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protein sequence of Gchil9011.t1

>Gchil9011.t1 ID=Gchil9011.t1|Name=Gchil9011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MKDAGLDVSQDAVGNIFGTWEGTTSLPGVLTGSHIDAIPHSGMYDGTLGV
VTAVEAVRALRQSGFSPQRSITVVMFTSEEPTRFGLSCIGSRLLVNALEK
NELDDLIDDTQTSFHSARIQAGYDGDIKSVPLQASSYSAFVELHIEQADV
LEKSGIDIGAVSNIAAPAAAQITFEGSGGHAGSLLMKYRNDAGLAAAQLA
LIVEKVALRRGEDCVATTGKLELFPGAVNSVPSMATMSLDIRDVDLKRRD
SALQEIEAEMMSIAIERNSNSDFTPPGWSLGGISHRPDEFVEEIDVHNGV
MVLAGVLQSLTGEEKTDL*
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mRNA from alignment at tig00004370_pilon:955643..956752+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9011.t1 ID=Gchil9011.t1|Name=Gchil9011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00004370_pilon:955643..956752+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGATGCTGGACTAGATGTTTCGCAAGATGCCGTTGGAAACATATT
TGGAACGTGGGAAGGGACCACTTCTTTGCCAGGGGTGCTAACAGGCTCAC
ACATCGACGCTATCCCACACAGTGGAATGTATGACGGTACATTGGGCGTT
GTTACAGCTGTTGAAGCTGTTCGTGCGTTGCGCCAGTCTGGATTCTCTCC
ACAGCGTTCCATTACGGTAGTCATGTTCACATCTGAAGAGCCTACTCGTT
TTGGTTTAAGTTGCATCGGAAGTCGCTTATTAGTGAACGCCCTTGAGAAA
AACGAGCTTGATGATCTCATTGACGATACACAGACCTCTTTTCACTCTGC
AAGAATACAAGCCGGATACGATGGCGATATCAAGTCCGTGCCTTTACAGG
CTTCTTCATATTCTGCGTTTGTAGAATTGCATATTGAGCAGGCGGACGTT
CTAGAAAAGTCAGGCATCGATATTGGTGCAGTTTCCAACATAGCTGCACC
AGCAGCTGCACAAATTACATTTGAAGGTAGTGGTGGTCATGCGGGGAGCT
TGTTAATGAAATATCGGAATGATGCAGGTCTTGCAGCAGCACAATTGGCT
CTAATCGTCGAAAAGGTTGCCTTGAGAAGAGGGGAAGATTGTGTTGCAAC
TACTGGGAAATTGGAGCTGTTTCCAGGTGCAGTTAATAGTGTGCCAAGCA
TGGCTACAATGTCCCTGGATATTAGGGATGTAGATTTGAAACGGAGAGAT
TCCGCTTTACAAGAAATTGAAGCCGAGATGATGTCCATAGCTATAGAAAG
AAACGTAAGCGCCAAATTCGAGATCCAAAGTAAGGATGACCCAGCTGTTT
GTGATTCTCACATCGTTGACACTGTTATTTCTGTGGCAGAGCAACTCGGA
CTTCACACCACCAGGATGGTCTCTCGTGCGTATCATGATGCCCTTTTTAT
GGCAAAATTGTTCCCCACTGCCATGATATTCGTTCCCTGCCAGGGTGGGA
TCAGTCATCGACCGGATGAATTCGTAGAAGAAATTGATGTGCACAACGGA
GTGATGGTGTTGGCCGGAGTCTTGCAAAGCCTAACTGGTGAGGAAAAAAC
AGATCTTTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:955643..956752+

>Gchil9011.t1 ID=Gchil9011.t1|Name=Gchil9011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00004370_pilon:955643..956752+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGATGCTGGACTAGATGTTTCGCAAGATGCCGTTGGAAACATATT
TGGAACGTGGGAAGGGACCACTTCTTTGCCAGGGGTGCTAACAGGCTCAC
ACATCGACGCTATCCCACACAGTGGAATGTATGACGGTACATTGGGCGTT
GTTACAGCTGTTGAAGCTGTTCGTGCGTTGCGCCAGTCTGGATTCTCTCC
ACAGCGTTCCATTACGGTAGTCATGTTCACATCTGAAGAGCCTACTCGTT
TTGGTTTAAGTTGCATCGGAAGTCGCTTATTAGTGAACGCCCTTGAGAAA
AACGAGCTTGATGATCTCATTGACGATACACAGACCTCTTTTCACTCTGC
AAGAATACAAGCCGGATACGATGGCGATATCAAGTCCGTGCCTTTACAGG
CTTCTTCATATTCTGCGTTTGTAGAATTGCATATTGAGCAGGCGGACGTT
CTAGAAAAGTCAGGCATCGATATTGGTGCAGTTTCCAACATAGCTGCACC
AGCAGCTGCACAAATTACATTTGAAGGTAGTGGTGGTCATGCGGGGAGCT
TGTTAATGAAATATCGGAATGATGCAGGTCTTGCAGCAGCACAATTGGCT
CTAATCGTCGAAAAGGTTGCCTTGAGAAGAGGGGAAGATTGTGTTGCAAC
TACTGGGAAATTGGAGCTGTTTCCAGGTGCAGTTAATAGTGTGCCAAGCA
TGGCTACAATGTCCCTGGATATTAGGGATGTAGATTTGAAACGGAGAGAT
TCCGCTTTACAAGAAATTGAAGCCGAGATGATGTCCATAGCTATAGAAAG
AAACAGCAACTCGGACTTCACACCACCAGGATGGTCTCTCGGTGGGATCA
GTCATCGACCGGATGAATTCGTAGAAGAAATTGATGTGCACAACGGAGTG
ATGGTGTTGGCCGGAGTCTTGCAAAGCCTAACTGGTGAGGAAAAAACAGA
TCTTTAG
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