Gchil9007.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9007.t1
Unique NameGchil9007.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:940648..941911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T007668
PFAMsAAA_28,Lactamase_B_2,Lactamase_B_4
Max annot lvl121069|Pythiales
Evalue4.15e-78
EggNOG OGsCOG1234@1|root,KOG2121@2759|Eukaryota,1MBMJ@121069|Pythiales
DescriptionZinc phosphodiesterase. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9007Gchil9007Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 940648..941911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9007.t1Gchil9007.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 940648..941911 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9007.t1.stop1Gchil9007.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 940648..940650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9007.t1.CDS1Gchil9007.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 940648..941759 -
Gchil9007.t1.CDS2Gchil9007.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 941815..941911 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9007.t1.exon1Gchil9007.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 940648..941759 -
Gchil9007.t1.exon2Gchil9007.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 941815..941911 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9007.t1.intron1Gchil9007.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 941760..941814 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9007.t1.start1Gchil9007.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 941909..941911 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9007.t1 ID=Gchil9007.t1|Name=Gchil9007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=403bp
MTQSTFQTHSVAAMTQKQTPVYRVAITGGPCAGKTTALAEVSERLRSRGF
AVYVVPEAATLIFTGGATFEGLTPAQVLNFQTQLLRTQIALEDSFVSIAA
ASNTPSFVLCDRGTCDGRAYMTSSLWNRMLAENAWDMVSIRDARYDVVVH
LVTAADGARRFYTLENNKARSESPEHAMRLDRRTQSAWVGHPHLRIVDNR
TNFREKINRVDARVSEVAGLHLTKRIVRKFLLSDIDEELSFRAEEFWVQQ
TFLSRGLGHGVQESVRKRGSGSRNTFVHKVRTADTETKRQVTNREYLSLL
AHCDMSRRTVRIRRRCFLYHGNYFVLDYVTNVDPEIGLLRCHCHEGEDDV
ELPDWLHVEREVTGEQEYTMYSLSGRVTKIRIRQDAVHREGRISDTDFAK
SF*
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spliced messenger RNA

>Gchil9007.t1 ID=Gchil9007.t1|Name=Gchil9007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00004370_pilon:940648..941911- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCAGTCCACCTTTCAAACTCACTCTGTTGCAGCTATGACCCAGAA
GCAAACCCCAGTCTACCGCGTAGCGATCACCGGCGGTCCTTGCGCAGGCA
AAACTACCGCTCTGGCGGAGGTTTCCGAGCGTTTGCGCTCTCGCGGATTC
GCTGTCTATGTCGTTCCCGAGGCTGCCACTCTCATATTTACTGGCGGTGC
CACATTTGAGGGTCTCACCCCTGCCCAAGTGCTAAATTTTCAAACCCAGT
TACTCCGCACTCAAATTGCTCTTGAGGATTCCTTTGTTTCCATTGCCGCT
GCTTCAAACACTCCCAGCTTCGTTTTGTGCGACCGCGGCACTTGCGACGG
ACGAGCATACATGACTTCTTCCTTGTGGAATCGCATGCTTGCCGAAAATG
CATGGGACATGGTATCCATTCGCGATGCACGCTACGATGTCGTCGTTCAT
CTCGTCACTGCTGCAGATGGTGCCAGGCGCTTTTACACATTGGAGAATAA
CAAGGCCCGTTCAGAATCCCCGGAACACGCTATGCGTCTGGATAGGCGCA
CCCAAAGCGCCTGGGTTGGCCATCCACACCTTCGCATCGTCGATAACCGT
ACAAATTTTCGTGAGAAGATCAATCGTGTAGATGCAAGAGTCTCTGAAGT
GGCTGGCTTACATCTCACAAAGCGCATCGTTCGTAAGTTCTTATTGAGTG
ACATTGATGAAGAACTGTCCTTCCGTGCCGAAGAGTTTTGGGTTCAACAG
ACATTCCTCTCTCGGGGGCTGGGCCATGGTGTGCAGGAAAGCGTCAGGAA
ACGAGGCTCTGGATCGCGCAACACATTTGTTCACAAGGTGAGAACTGCGG
ATACCGAAACAAAGAGGCAAGTGACCAACAGAGAATATCTAAGCTTGCTT
GCTCATTGTGACATGTCTCGAAGAACTGTTCGCATTCGACGAAGATGTTT
TTTGTACCATGGCAACTACTTTGTTCTAGACTACGTAACAAACGTTGATC
CGGAAATTGGTCTTCTCCGATGTCACTGTCACGAGGGAGAAGATGATGTT
GAACTGCCCGATTGGCTCCACGTTGAACGCGAGGTGACTGGAGAACAAGA
GTATACCATGTACAGTCTTAGCGGACGTGTGACGAAAATTCGCATCCGGC
AAGATGCAGTTCATCGTGAGGGTCGTATCAGCGATACGGACTTTGCCAAA
AGTTTTTAG
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protein sequence of Gchil9007.t1

>Gchil9007.t1 ID=Gchil9007.t1|Name=Gchil9007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=403bp
MTQSTFQTHSVAAMTQKQTPVYRVAITGGPCAGKTTALAEVSERLRSRGF
AVYVVPEAATLIFTGGATFEGLTPAQVLNFQTQLLRTQIALEDSFVSIAA
ASNTPSFVLCDRGTCDGRAYMTSSLWNRMLAENAWDMVSIRDARYDVVVH
LVTAADGARRFYTLENNKARSESPEHAMRLDRRTQSAWVGHPHLRIVDNR
TNFREKINRVDARVSEVAGLHLTKRIVRKFLLSDIDEELSFRAEEFWVQQ
TFLSRGLGHGVQESVRKRGSGSRNTFVHKVRTADTETKRQVTNREYLSLL
AHCDMSRRTVRIRRRCFLYHGNYFVLDYVTNVDPEIGLLRCHCHEGEDDV
ELPDWLHVEREVTGEQEYTMYSLSGRVTKIRIRQDAVHREGRISDTDFAK
SF*
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mRNA from alignment at tig00004370_pilon:940648..941911-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9007.t1 ID=Gchil9007.t1|Name=Gchil9007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1264bp|location=Sequence derived from alignment at tig00004370_pilon:940648..941911- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCAGTCCACCTTTCAAACTCACTCTGTTGCAGCTATGACCCAGAA
GCAAACCCCAGTCTACCGCGTAGCGATCACCGGCGGTCCTTGCGCAGGTA
CGCCATTTTCGATCATACGCCTCGCATCTCGCACAATCTAACTTACTTCT
AGGCAAAACTACCGCTCTGGCGGAGGTTTCCGAGCGTTTGCGCTCTCGCG
GATTCGCTGTCTATGTCGTTCCCGAGGCTGCCACTCTCATATTTACTGGC
GGTGCCACATTTGAGGGTCTCACCCCTGCCCAAGTGCTAAATTTTCAAAC
CCAGTTACTCCGCACTCAAATTGCTCTTGAGGATTCCTTTGTTTCCATTG
CCGCTGCTTCAAACACTCCCAGCTTCGTTTTGTGCGACCGCGGCACTTGC
GACGGACGAGCATACATGACTTCTTCCTTGTGGAATCGCATGCTTGCCGA
AAATGCATGGGACATGGTATCCATTCGCGATGCACGCTACGATGTCGTCG
TTCATCTCGTCACTGCTGCAGATGGTGCCAGGCGCTTTTACACATTGGAG
AATAACAAGGCCCGTTCAGAATCCCCGGAACACGCTATGCGTCTGGATAG
GCGCACCCAAAGCGCCTGGGTTGGCCATCCACACCTTCGCATCGTCGATA
ACCGTACAAATTTTCGTGAGAAGATCAATCGTGTAGATGCAAGAGTCTCT
GAAGTGGCTGGCTTACATCTCACAAAGCGCATCGTTCGTAAGTTCTTATT
GAGTGACATTGATGAAGAACTGTCCTTCCGTGCCGAAGAGTTTTGGGTTC
AACAGACATTCCTCTCTCGGGGGCTGGGCCATGGTGTGCAGGAAAGCGTC
AGGAAACGAGGCTCTGGATCGCGCAACACATTTGTTCACAAGGTGAGAAC
TGCGGATACCGAAACAAAGAGGCAAGTGACCAACAGAGAATATCTAAGCT
TGCTTGCTCATTGTGACATGTCTCGAAGAACTGTTCGCATTCGACGAAGA
TGTTTTTTGTACCATGGCAACTACTTTGTTCTAGACTACGTAACAAACGT
TGATCCGGAAATTGGTCTTCTCCGATGTCACTGTCACGAGGGAGAAGATG
ATGTTGAACTGCCCGATTGGCTCCACGTTGAACGCGAGGTGACTGGAGAA
CAAGAGTATACCATGTACAGTCTTAGCGGACGTGTGACGAAAATTCGCAT
CCGGCAAGATGCAGTTCATCGTGAGGGTCGTATCAGCGATACGGACTTTG
CCAAAAGTTTTTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:940648..941911-

>Gchil9007.t1 ID=Gchil9007.t1|Name=Gchil9007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00004370_pilon:940648..941911- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCAGTCCACCTTTCAAACTCACTCTGTTGCAGCTATGACCCAGAA
GCAAACCCCAGTCTACCGCGTAGCGATCACCGGCGGTCCTTGCGCAGGCA
AAACTACCGCTCTGGCGGAGGTTTCCGAGCGTTTGCGCTCTCGCGGATTC
GCTGTCTATGTCGTTCCCGAGGCTGCCACTCTCATATTTACTGGCGGTGC
CACATTTGAGGGTCTCACCCCTGCCCAAGTGCTAAATTTTCAAACCCAGT
TACTCCGCACTCAAATTGCTCTTGAGGATTCCTTTGTTTCCATTGCCGCT
GCTTCAAACACTCCCAGCTTCGTTTTGTGCGACCGCGGCACTTGCGACGG
ACGAGCATACATGACTTCTTCCTTGTGGAATCGCATGCTTGCCGAAAATG
CATGGGACATGGTATCCATTCGCGATGCACGCTACGATGTCGTCGTTCAT
CTCGTCACTGCTGCAGATGGTGCCAGGCGCTTTTACACATTGGAGAATAA
CAAGGCCCGTTCAGAATCCCCGGAACACGCTATGCGTCTGGATAGGCGCA
CCCAAAGCGCCTGGGTTGGCCATCCACACCTTCGCATCGTCGATAACCGT
ACAAATTTTCGTGAGAAGATCAATCGTGTAGATGCAAGAGTCTCTGAAGT
GGCTGGCTTACATCTCACAAAGCGCATCGTTCGTAAGTTCTTATTGAGTG
ACATTGATGAAGAACTGTCCTTCCGTGCCGAAGAGTTTTGGGTTCAACAG
ACATTCCTCTCTCGGGGGCTGGGCCATGGTGTGCAGGAAAGCGTCAGGAA
ACGAGGCTCTGGATCGCGCAACACATTTGTTCACAAGGTGAGAACTGCGG
ATACCGAAACAAAGAGGCAAGTGACCAACAGAGAATATCTAAGCTTGCTT
GCTCATTGTGACATGTCTCGAAGAACTGTTCGCATTCGACGAAGATGTTT
TTTGTACCATGGCAACTACTTTGTTCTAGACTACGTAACAAACGTTGATC
CGGAAATTGGTCTTCTCCGATGTCACTGTCACGAGGGAGAAGATGATGTT
GAACTGCCCGATTGGCTCCACGTTGAACGCGAGGTGACTGGAGAACAAGA
GTATACCATGTACAGTCTTAGCGGACGTGTGACGAAAATTCGCATCCGGC
AAGATGCAGTTCATCGTGAGGGTCGTATCAGCGATACGGACTTTGCCAAA
AGTTTTTAG
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