Gchil9004.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9004.t1
Unique NameGchil9004.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:933558..934554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702297.1
Preferred nameUOX
PFAMsUricase
Max annot lvl2759|Eukaryota
KEGG rclassRC02107,RC02551
KEGG koko:K00365,ko:K07953
KEGG ReactionR02106,R07981
KEGG Pathwayko00230,ko00232,ko01100,ko01120,ko04141,ko05134,map00230,map00232,map01100,map01120,map04141,map05134
KEGG ModuleM00404,M00546
GOsGO:0000255,GO:0003674,GO:0003824,GO:0004846,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0006996,GO:0007031,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009636,GO:0009987,GO:0010033,GO:0016043,GO:0016491,GO:0016661,GO:0016663,GO:0017144,GO:0018130,GO:0019428,GO:0019439,GO:0019627,GO:0019628,GO:0022607,GO:0031907,GO:0031974,GO:0034641,GO:0042221,GO:0042493,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046113,GO:0046415,GO:0046483,GO:0046677,GO:0046700,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0071941,GO:0072521,GO:0072523,GO:0097305,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901700
Evalue3.24e-71
EggNOG OGsCOG3648@1|root,KOG1599@2759|Eukaryota
EC1.7.3.3
Descriptionurate oxidase activity
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9004Gchil9004Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 933558..934554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9004.t1Gchil9004.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 933558..934554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9004.t1.stop1Gchil9004.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 933558..933560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9004.t1.CDS1Gchil9004.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 933558..934044 -
Gchil9004.t1.CDS2Gchil9004.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 934115..934554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9004.t1.exon1Gchil9004.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 933558..934044 -
Gchil9004.t1.exon2Gchil9004.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 934115..934554 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9004.t1.intron1Gchil9004.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 934045..934114 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9004.t1.start1Gchil9004.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 934552..934554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9004.t1 ID=Gchil9004.t1|Name=Gchil9004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp
MKSKLQAAIHGKARVRVAKVTRTAGRHDFTEFTVQIELSGGTNASFTEGD
NRFVVATDTCKNHVYVLAKTHPMSCPETFALSLANRFLQFYSHLDGVRIS
VEERPWRRYQVDAVPHAHGFVLSADGTSVCDVQMTRTETILQSGLKSLSV
LKTTQSGWEKFLRDNFTTLPDTTERILATTIDAKWSYRIDQLTALLRIDY
PKLRKHVLRLSLQQFFGPLQTGVYSKGVQETLFKMANAVVQQVKELDTIT
FSLPNLHFLPCNIPVFEKNGIPFQDDIFIPSSEPHGLITATVSSRNIPTS
SPIRRSRL*
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spliced messenger RNA

>Gchil9004.t1 ID=Gchil9004.t1|Name=Gchil9004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004370_pilon:933558..934554- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCCAAGCTGCAGGCGGCGATCCACGGAAAAGCCCGAGTTCGGGT
AGCAAAGGTAACGCGCACTGCAGGCCGCCATGATTTCACCGAATTCACTG
TACAAATAGAGCTAAGCGGTGGCACCAATGCCTCCTTCACGGAAGGCGAT
AATCGCTTCGTGGTCGCCACGGACACATGCAAGAATCATGTGTACGTACT
TGCCAAGACCCATCCCATGTCCTGTCCTGAAACTTTTGCCTTGTCTCTGG
CAAACCGTTTTCTTCAGTTTTATTCCCATCTGGACGGTGTACGAATATCT
GTTGAAGAGCGTCCGTGGAGACGATATCAAGTAGATGCTGTTCCTCATGC
CCACGGGTTTGTGCTAAGTGCTGACGGTACTTCAGTGTGTGATGTACAAA
TGACTCGTACCGAAACCATCCTTCAGTCTGGTCTAAAAAGCCTTAGCGTA
CTCAAAACTACTCAGAGTGGTTGGGAGAAGTTCTTGAGGGACAACTTCAC
CACTCTGCCTGACACAACTGAGAGAATATTAGCCACAACAATTGATGCAA
AGTGGTCCTATCGAATCGACCAACTTACAGCTTTATTACGCATTGATTAT
CCGAAGCTGCGCAAGCACGTTCTTAGACTTTCTCTGCAGCAGTTTTTTGG
GCCGCTTCAAACAGGTGTATACAGCAAAGGAGTTCAGGAAACGCTATTCA
AGATGGCTAACGCTGTCGTTCAGCAAGTGAAAGAGCTTGATACGATTACA
TTTTCCTTACCAAATCTACATTTTCTCCCCTGTAATATTCCTGTCTTTGA
GAAGAACGGTATCCCGTTCCAGGATGATATTTTCATACCATCATCGGAAC
CTCATGGGCTAATAACAGCCACTGTTTCCTCACGAAATATACCAACATCC
TCGCCAATACGGAGATCACGACTATGA
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protein sequence of Gchil9004.t1

>Gchil9004.t1 ID=Gchil9004.t1|Name=Gchil9004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=309bp
MKSKLQAAIHGKARVRVAKVTRTAGRHDFTEFTVQIELSGGTNASFTEGD
NRFVVATDTCKNHVYVLAKTHPMSCPETFALSLANRFLQFYSHLDGVRIS
VEERPWRRYQVDAVPHAHGFVLSADGTSVCDVQMTRTETILQSGLKSLSV
LKTTQSGWEKFLRDNFTTLPDTTERILATTIDAKWSYRIDQLTALLRIDY
PKLRKHVLRLSLQQFFGPLQTGVYSKGVQETLFKMANAVVQQVKELDTIT
FSLPNLHFLPCNIPVFEKNGIPFQDDIFIPSSEPHGLITATVSSRNIPTS
SPIRRSRL*
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mRNA from alignment at tig00004370_pilon:933558..934554-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9004.t1 ID=Gchil9004.t1|Name=Gchil9004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=997bp|location=Sequence derived from alignment at tig00004370_pilon:933558..934554- (Gracilaria chilensis NLEC103_M9 male)
ATGAAATCCAAGCTGCAGGCGGCGATCCACGGAAAAGCCCGAGTTCGGGT
AGCAAAGGTAACGCGCACTGCAGGCCGCCATGATTTCACCGAATTCACTG
TACAAATAGAGCTAAGCGGTGGCACCAATGCCTCCTTCACGGAAGGCGAT
AATCGCTTCGTGGTCGCCACGGACACATGCAAGAATCATGTGTACGTACT
TGCCAAGACCCATCCCATGTCCTGTCCTGAAACTTTTGCCTTGTCTCTGG
CAAACCGTTTTCTTCAGTTTTATTCCCATCTGGACGGTGTACGAATATCT
GTTGAAGAGCGTCCGTGGAGACGATATCAAGTAGATGCTGTTCCTCATGC
CCACGGGTTTGTGCTAAGTGCTGACGGTACTTCAGTGTGTGATGTACAAA
TGACTCGTACCGAAACCATCCTTCAGTCTGGTCTAAAAAGGTACGCTCCC
CAACAGATTTGAGAACATAGGTGAATGCAATGCATCTAACATATCCTCCA
AATGCCACAGCCTTAGCGTACTCAAAACTACTCAGAGTGGTTGGGAGAAG
TTCTTGAGGGACAACTTCACCACTCTGCCTGACACAACTGAGAGAATATT
AGCCACAACAATTGATGCAAAGTGGTCCTATCGAATCGACCAACTTACAG
CTTTATTACGCATTGATTATCCGAAGCTGCGCAAGCACGTTCTTAGACTT
TCTCTGCAGCAGTTTTTTGGGCCGCTTCAAACAGGTGTATACAGCAAAGG
AGTTCAGGAAACGCTATTCAAGATGGCTAACGCTGTCGTTCAGCAAGTGA
AAGAGCTTGATACGATTACATTTTCCTTACCAAATCTACATTTTCTCCCC
TGTAATATTCCTGTCTTTGAGAAGAACGGTATCCCGTTCCAGGATGATAT
TTTCATACCATCATCGGAACCTCATGGGCTAATAACAGCCACTGTTTCCT
CACGAAATATACCAACATCCTCGCCAATACGGAGATCACGACTATGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:933558..934554-

>Gchil9004.t1 ID=Gchil9004.t1|Name=Gchil9004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00004370_pilon:933558..934554- (Gracilaria chilensis NLEC103_M9 male)
ATGAAATCCAAGCTGCAGGCGGCGATCCACGGAAAAGCCCGAGTTCGGGT
AGCAAAGGTAACGCGCACTGCAGGCCGCCATGATTTCACCGAATTCACTG
TACAAATAGAGCTAAGCGGTGGCACCAATGCCTCCTTCACGGAAGGCGAT
AATCGCTTCGTGGTCGCCACGGACACATGCAAGAATCATGTGTACGTACT
TGCCAAGACCCATCCCATGTCCTGTCCTGAAACTTTTGCCTTGTCTCTGG
CAAACCGTTTTCTTCAGTTTTATTCCCATCTGGACGGTGTACGAATATCT
GTTGAAGAGCGTCCGTGGAGACGATATCAAGTAGATGCTGTTCCTCATGC
CCACGGGTTTGTGCTAAGTGCTGACGGTACTTCAGTGTGTGATGTACAAA
TGACTCGTACCGAAACCATCCTTCAGTCTGGTCTAAAAAGCCTTAGCGTA
CTCAAAACTACTCAGAGTGGTTGGGAGAAGTTCTTGAGGGACAACTTCAC
CACTCTGCCTGACACAACTGAGAGAATATTAGCCACAACAATTGATGCAA
AGTGGTCCTATCGAATCGACCAACTTACAGCTTTATTACGCATTGATTAT
CCGAAGCTGCGCAAGCACGTTCTTAGACTTTCTCTGCAGCAGTTTTTTGG
GCCGCTTCAAACAGGTGTATACAGCAAAGGAGTTCAGGAAACGCTATTCA
AGATGGCTAACGCTGTCGTTCAGCAAGTGAAAGAGCTTGATACGATTACA
TTTTCCTTACCAAATCTACATTTTCTCCCCTGTAATATTCCTGTCTTTGA
GAAGAACGGTATCCCGTTCCAGGATGATATTTTCATACCATCATCGGAAC
CTCATGGGCTAATAACAGCCACTGTTTCCTCACGAAATATACCAACATCC
TCGCCAATACGGAGATCACGACTATGA
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