Gchil9002.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9002.t1
Unique NameGchil9002.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length603
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:918243..920253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7029.ACYPI55358-PA
PFAMsExo_endo_phos_2,RVT_1
Max annot lvl33208|Metazoa
Evalue1.1e-32
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3AHY4@33154|Opisthokonta,3BXFH@33208|Metazoa,3DEI5@33213|Bilateria
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9002Gchil9002Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 918243..920253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9002.t1Gchil9002.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 918243..920253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9002.t1.stop1Gchil9002.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 918243..918245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9002.t1.CDS1Gchil9002.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 918243..918320 -
Gchil9002.t1.CDS2Gchil9002.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 918424..919840 -
Gchil9002.t1.CDS3Gchil9002.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 919940..920253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9002.t1.exon1Gchil9002.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 918243..918320 -
Gchil9002.t1.exon2Gchil9002.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 918424..919840 -
Gchil9002.t1.exon3Gchil9002.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 919940..920253 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9002.t1.intron1Gchil9002.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 918321..918423 -
Gchil9002.t1.intron2Gchil9002.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 919841..919939 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9002.t1.start1Gchil9002.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 920251..920253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9002.t1 ID=Gchil9002.t1|Name=Gchil9002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp
MKRWYTLLDDQDMIVGDCNICGSWYPSRAEAAGIEFEEHMQKTHREVLNM
DGVATHTDPASRSQSSIDVAVIPEKWLPLTTWEAAPEPFTDHHACLITVD
VGKKKEVESIDKLYEMFYVAVLEAAKHSVPFGKRRREAPWWSPEAAEVVE
MRAIRWKEFQANPSEENRTALQRAQYHARVVIDKLKRETWKEMMESLRPQ
DEDAKLWTIVKAIDKSSMEHPSFCPSAGERWLGKKRAKWFVKSEIRNART
HEKETRSRNEYRKALNDYRTKAKDTEAWTNNTFDMHHLEVELKEMNPKKA
GGPDLVQIAFLQHLPELGKKWLLEIINKSYKEGKTPAKWRLSRLLPIPKP
RVKGKFRPISLTCVVARVAERMVNRLFMNWLEPRLPACQAGFRMMRTTEE
HVVALCERITHGWQHRRQTLALFCDFSKAYDCVQHHKLLVKLERMGCPTK
LWRWIRAFIMDRRWTCRWKTSDTRPFVVPQGLPQGGTLSPGLWIAYVSDL
PNRVKQGDDRIEVSLFADDVSISSTQRKLEFSRHAIQAAVERLEVYCAEN
YIQMNPKKTSLVPFTYSNWKKERTKYEQQSTEQGTEYCAVSLAPPGEQIG
RP*
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spliced messenger RNA

>Gchil9002.t1 ID=Gchil9002.t1|Name=Gchil9002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00004370_pilon:918243..920253- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGATGGTATACATTACTCGACGACCAAGACATGATAGTCGGAGA
CTGTAATATTTGTGGCTCATGGTACCCTTCAAGAGCCGAAGCAGCAGGAA
TTGAGTTTGAGGAGCACATGCAGAAGACGCATCGAGAGGTATTGAATATG
GATGGCGTTGCAACTCACACAGATCCGGCAAGCCGATCACAGAGTAGCAT
AGATGTGGCGGTCATCCCGGAAAAATGGCTACCTCTCACTACATGGGAAG
CAGCACCAGAACCTTTTACAGATCATCACGCATGCCTCATAACAGTAGAT
GTGGGAAAAAAGAAAGAAGTAGAAAGTATTGATAAGCTCTATGAAATGTT
TTATGTAGCAGTTCTAGAAGCAGCAAAGCATTCAGTACCATTTGGGAAAA
GAAGACGAGAAGCACCATGGTGGAGCCCGGAGGCAGCAGAAGTAGTGGAA
ATGAGAGCAATCAGGTGGAAAGAATTCCAAGCCAATCCGAGTGAGGAAAA
CAGAACCGCTCTACAAAGAGCCCAATATCACGCAAGAGTTGTCATTGATA
AGCTAAAACGAGAAACATGGAAAGAAATGATGGAATCGTTACGACCACAA
GACGAAGATGCAAAACTGTGGACAATAGTGAAAGCAATTGACAAGAGCAG
TATGGAACATCCGAGCTTTTGTCCATCGGCTGGAGAACGCTGGCTGGGTA
AAAAGCGAGCAAAGTGGTTTGTAAAATCAGAAATTCGGAACGCCCGAACT
CATGAGAAGGAAACAAGATCACGAAATGAGTACAGAAAAGCTCTAAACGA
TTACCGCACGAAAGCAAAGGACACTGAAGCATGGACGAACAATACATTTG
ACATGCACCATTTGGAGGTGGAGCTCAAAGAAATGAACCCTAAGAAAGCC
GGAGGTCCGGATCTAGTACAGATAGCCTTTCTTCAGCATCTTCCAGAATT
GGGAAAGAAATGGCTTCTTGAAATAATTAACAAGAGCTACAAGGAAGGTA
AGACACCGGCCAAGTGGAGACTTTCACGCCTTCTCCCGATCCCCAAACCA
AGAGTTAAAGGTAAGTTTCGGCCGATATCACTTACCTGTGTTGTAGCAAG
GGTGGCAGAAAGAATGGTTAACAGGCTGTTTATGAACTGGCTGGAACCAA
GACTACCGGCATGCCAAGCGGGATTCAGAATGATGCGAACAACCGAGGAG
CATGTTGTGGCTTTATGTGAACGAATTACACATGGCTGGCAGCATAGAAG
ACAGACATTAGCCTTATTCTGTGACTTTTCTAAGGCTTATGATTGCGTGC
AACACCATAAGTTACTGGTGAAGTTGGAAAGAATGGGATGCCCAACAAAG
TTGTGGAGATGGATTAGAGCGTTTATCATGGACCGACGATGGACCTGCAG
ATGGAAAACATCGGACACCAGACCGTTTGTCGTACCACAAGGACTCCCGC
AAGGAGGGACCCTCTCCCCGGGATTATGGATAGCTTACGTTTCAGATCTT
CCGAACAGGGTAAAGCAAGGCGACGATCGAATTGAGGTAAGCTTATTTGC
GGATGATGTTTCCATATCTTCGACCCAAAGAAAACTAGAGTTTAGCCGAC
ATGCTATTCAGGCAGCAGTTGAAAGATTGGAAGTATATTGTGCAGAGAAC
TATATCCAAATGAACCCTAAGAAAACTTCGTTGGTGCCGTTTACTTATTC
TAATTGGAAGAAAGAAAGAACAAAGTATGAACAGCAAAGTACAGAGCAAG
GAACCGAATATTGCGCTGTCTCACTGGCACCACCTGGGGAGCAGATTGGA
AGACCATGA
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protein sequence of Gchil9002.t1

>Gchil9002.t1 ID=Gchil9002.t1|Name=Gchil9002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=603bp
MKRWYTLLDDQDMIVGDCNICGSWYPSRAEAAGIEFEEHMQKTHREVLNM
DGVATHTDPASRSQSSIDVAVIPEKWLPLTTWEAAPEPFTDHHACLITVD
VGKKKEVESIDKLYEMFYVAVLEAAKHSVPFGKRRREAPWWSPEAAEVVE
MRAIRWKEFQANPSEENRTALQRAQYHARVVIDKLKRETWKEMMESLRPQ
DEDAKLWTIVKAIDKSSMEHPSFCPSAGERWLGKKRAKWFVKSEIRNART
HEKETRSRNEYRKALNDYRTKAKDTEAWTNNTFDMHHLEVELKEMNPKKA
GGPDLVQIAFLQHLPELGKKWLLEIINKSYKEGKTPAKWRLSRLLPIPKP
RVKGKFRPISLTCVVARVAERMVNRLFMNWLEPRLPACQAGFRMMRTTEE
HVVALCERITHGWQHRRQTLALFCDFSKAYDCVQHHKLLVKLERMGCPTK
LWRWIRAFIMDRRWTCRWKTSDTRPFVVPQGLPQGGTLSPGLWIAYVSDL
PNRVKQGDDRIEVSLFADDVSISSTQRKLEFSRHAIQAAVERLEVYCAEN
YIQMNPKKTSLVPFTYSNWKKERTKYEQQSTEQGTEYCAVSLAPPGEQIG
RP*
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mRNA from alignment at tig00004370_pilon:918243..920253-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9002.t1 ID=Gchil9002.t1|Name=Gchil9002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2011bp|location=Sequence derived from alignment at tig00004370_pilon:918243..920253- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGATGGTATACATTACTCGACGACCAAGACATGATAGTCGGAGA
CTGTAATATTTGTGGCTCATGGTACCCTTCAAGAGCCGAAGCAGCAGGAA
TTGAGTTTGAGGAGCACATGCAGAAGACGCATCGAGAGGTATTGAATATG
GATGGCGTTGCAACTCACACAGATCCGGCAAGCCGATCACAGAGTAGCAT
AGATGTGGCGGTCATCCCGGAAAAATGGCTACCTCTCACTACATGGGAAG
CAGCACCAGAACCTTTTACAGATCATCACGCATGCCTCATAACAGTAGAT
GTGGGAAAAAAGAAGTACGTTCAAGACAAAAGGAAGCACTGGAGTTTACG
TAAAGCGGACTGGAAAAAATTCTCCATAGAAGTAGAAAACAGGCTTTGAA
TGCTAGATAATAGAGAAGTAGAAAGTATTGATAAGCTCTATGAAATGTTT
TATGTAGCAGTTCTAGAAGCAGCAAAGCATTCAGTACCATTTGGGAAAAG
AAGACGAGAAGCACCATGGTGGAGCCCGGAGGCAGCAGAAGTAGTGGAAA
TGAGAGCAATCAGGTGGAAAGAATTCCAAGCCAATCCGAGTGAGGAAAAC
AGAACCGCTCTACAAAGAGCCCAATATCACGCAAGAGTTGTCATTGATAA
GCTAAAACGAGAAACATGGAAAGAAATGATGGAATCGTTACGACCACAAG
ACGAAGATGCAAAACTGTGGACAATAGTGAAAGCAATTGACAAGAGCAGT
ATGGAACATCCGAGCTTTTGTCCATCGGCTGGAGAACGCTGGCTGGGTAA
AAAGCGAGCAAAGTGGTTTGTAAAATCAGAAATTCGGAACGCCCGAACTC
ATGAGAAGGAAACAAGATCACGAAATGAGTACAGAAAAGCTCTAAACGAT
TACCGCACGAAAGCAAAGGACACTGAAGCATGGACGAACAATACATTTGA
CATGCACCATTTGGAGGTGGAGCTCAAAGAAATGAACCCTAAGAAAGCCG
GAGGTCCGGATCTAGTACAGATAGCCTTTCTTCAGCATCTTCCAGAATTG
GGAAAGAAATGGCTTCTTGAAATAATTAACAAGAGCTACAAGGAAGGTAA
GACACCGGCCAAGTGGAGACTTTCACGCCTTCTCCCGATCCCCAAACCAA
GAGTTAAAGGTAAGTTTCGGCCGATATCACTTACCTGTGTTGTAGCAAGG
GTGGCAGAAAGAATGGTTAACAGGCTGTTTATGAACTGGCTGGAACCAAG
ACTACCGGCATGCCAAGCGGGATTCAGAATGATGCGAACAACCGAGGAGC
ATGTTGTGGCTTTATGTGAACGAATTACACATGGCTGGCAGCATAGAAGA
CAGACATTAGCCTTATTCTGTGACTTTTCTAAGGCTTATGATTGCGTGCA
ACACCATAAGTTACTGGTGAAGTTGGAAAGAATGGGATGCCCAACAAAGT
TGTGGAGATGGATTAGAGCGTTTATCATGGACCGACGATGGACCTGCAGA
TGGAAAACATCGGACACCAGACCGTTTGTCGTACCACAAGGACTCCCGCA
AGGAGGGACCCTCTCCCCGGGATTATGGATAGCTTACGTTTCAGATCTTC
CGAACAGGGTAAAGCAAGGCGACGATCGAATTGAGGTAAGCTTATTTGCG
GATGATGTTTCCATATCTTCGACCCAAAGAAAACTAGAGTTTAGCCGACA
TGCTATTCAGGCAGCAGTTGAAAGATTGGAAGTATATTGTGCAGAGAACT
ATATCCAAATGAACCCTAAGAAAACTTCGTTGGTGCCGTTTACTTATTCT
AATTGGAAGAAAGAAAGAACAAAGTATGAAGTAAGACTGGCGGGCTCGTG
GATACAACTTTCGGAATGTGCGAGGTTTCTAGGGGTTGTACTGGACTGTC
GACTTAACTTCCACCATCACCTCAACCGCGTAGCAGCAAAGTACAGAGCA
AGGAACCGAATATTGCGCTGTCTCACTGGCACCACCTGGGGAGCAGATTG
GAAGACCATGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:918243..920253-

>Gchil9002.t1 ID=Gchil9002.t1|Name=Gchil9002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1809bp|location=Sequence derived from alignment at tig00004370_pilon:918243..920253- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGATGGTATACATTACTCGACGACCAAGACATGATAGTCGGAGA
CTGTAATATTTGTGGCTCATGGTACCCTTCAAGAGCCGAAGCAGCAGGAA
TTGAGTTTGAGGAGCACATGCAGAAGACGCATCGAGAGGTATTGAATATG
GATGGCGTTGCAACTCACACAGATCCGGCAAGCCGATCACAGAGTAGCAT
AGATGTGGCGGTCATCCCGGAAAAATGGCTACCTCTCACTACATGGGAAG
CAGCACCAGAACCTTTTACAGATCATCACGCATGCCTCATAACAGTAGAT
GTGGGAAAAAAGAAAGAAGTAGAAAGTATTGATAAGCTCTATGAAATGTT
TTATGTAGCAGTTCTAGAAGCAGCAAAGCATTCAGTACCATTTGGGAAAA
GAAGACGAGAAGCACCATGGTGGAGCCCGGAGGCAGCAGAAGTAGTGGAA
ATGAGAGCAATCAGGTGGAAAGAATTCCAAGCCAATCCGAGTGAGGAAAA
CAGAACCGCTCTACAAAGAGCCCAATATCACGCAAGAGTTGTCATTGATA
AGCTAAAACGAGAAACATGGAAAGAAATGATGGAATCGTTACGACCACAA
GACGAAGATGCAAAACTGTGGACAATAGTGAAAGCAATTGACAAGAGCAG
TATGGAACATCCGAGCTTTTGTCCATCGGCTGGAGAACGCTGGCTGGGTA
AAAAGCGAGCAAAGTGGTTTGTAAAATCAGAAATTCGGAACGCCCGAACT
CATGAGAAGGAAACAAGATCACGAAATGAGTACAGAAAAGCTCTAAACGA
TTACCGCACGAAAGCAAAGGACACTGAAGCATGGACGAACAATACATTTG
ACATGCACCATTTGGAGGTGGAGCTCAAAGAAATGAACCCTAAGAAAGCC
GGAGGTCCGGATCTAGTACAGATAGCCTTTCTTCAGCATCTTCCAGAATT
GGGAAAGAAATGGCTTCTTGAAATAATTAACAAGAGCTACAAGGAAGGTA
AGACACCGGCCAAGTGGAGACTTTCACGCCTTCTCCCGATCCCCAAACCA
AGAGTTAAAGGTAAGTTTCGGCCGATATCACTTACCTGTGTTGTAGCAAG
GGTGGCAGAAAGAATGGTTAACAGGCTGTTTATGAACTGGCTGGAACCAA
GACTACCGGCATGCCAAGCGGGATTCAGAATGATGCGAACAACCGAGGAG
CATGTTGTGGCTTTATGTGAACGAATTACACATGGCTGGCAGCATAGAAG
ACAGACATTAGCCTTATTCTGTGACTTTTCTAAGGCTTATGATTGCGTGC
AACACCATAAGTTACTGGTGAAGTTGGAAAGAATGGGATGCCCAACAAAG
TTGTGGAGATGGATTAGAGCGTTTATCATGGACCGACGATGGACCTGCAG
ATGGAAAACATCGGACACCAGACCGTTTGTCGTACCACAAGGACTCCCGC
AAGGAGGGACCCTCTCCCCGGGATTATGGATAGCTTACGTTTCAGATCTT
CCGAACAGGGTAAAGCAAGGCGACGATCGAATTGAGGTAAGCTTATTTGC
GGATGATGTTTCCATATCTTCGACCCAAAGAAAACTAGAGTTTAGCCGAC
ATGCTATTCAGGCAGCAGTTGAAAGATTGGAAGTATATTGTGCAGAGAAC
TATATCCAAATGAACCCTAAGAAAACTTCGTTGGTGCCGTTTACTTATTC
TAATTGGAAGAAAGAAAGAACAAAGTATGAACAGCAAAGTACAGAGCAAG
GAACCGAATATTGCGCTGTCTCACTGGCACCACCTGGGGAGCAGATTGGA
AGACCATGA
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