Gchil9000.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9000.t1
Unique Name	Gchil9000.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	252

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:912930..913685 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR255CT
Preferred name	IPP
PFAMs	APS_kinase,ATP-sulfurylase,PUA_2,Peptidase_M14,Pyrophosphatase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078,RC02809,RC02889
KEGG ko	ko:K01507,ko:K13811
KEGG Reaction	R00509,R00529,R04928,R04929
KEGG Pathway	ko00190,ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00190,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG Module	M00176
GOs	GO:0000287,GO:0003674,GO:0003824,GO:0004427,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006793,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010876,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019915,GO:0033036,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0046872,GO:0050896,GO:0051179,GO:0051235,GO:0065007,GO:0065008,GO:0071344,GO:0071704
Evalue	6.1e-91
EggNOG OGs	COG0221@1\|root,KOG1626@2759\|Eukaryota
EC	2.7.1.25,2.7.7.4,3.6.1.1
Description	inorganic diphosphatase activity
COG category	C
BiGG Reaction	iJN746.PP_0538
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9000	Gchil9000	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 912930..913685 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9000.t1.start1	Gchil9000.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 912930..912932 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9000.t1.CDS1	Gchil9000.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 912930..913685 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9000.t1.exon1	Gchil9000.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 912930..913685 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9000.t1.stop1	Gchil9000.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 913683..913685 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9000.t1	Gchil9000.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 912930..913685 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:912930..913685+
coding sequence from alignment at tig00004370_pilon:912930..913685+

mRNA sequence

>Gchil9000.t1 ID=Gchil9000.t1|Name=Gchil9000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MHHDSITDVPPIQTESVGELNTKSFRLFFRSAKDVQLSPWHDIPLYPDPS
DTSVVHFINEIPRGTQAKMEIATDEARTPIKQDIKKGELRFYKYGPSVVN
YGAIPQTWEDPSSVHPELNFCGDGDPVDVCEIGDAVMPFGSVYTVKVLGC
LALLDEGEIDWKIIGINTDDPKAGEVNDIDDVERVFPGKVHEVREWFRLY
KTAEGKGENEYGYSGEAKNSGFAQTVVSETHNSWADLKNGKIENEDELSL
Q*

spliced messenger RNA

>Gchil9000.t1 ID=Gchil9000.t1|Name=Gchil9000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004370_pilon:912930..913685+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACGATTCAATCACAGACGTTCCGCCGATACAAACCGAATCAGT
TGGTGAATTAAATACGAAAAGCTTTCGTCTATTCTTTCGATCGGCCAAAG
ATGTTCAGTTATCGCCGTGGCATGATATCCCACTCTACCCGGATCCGTCC
GATACTTCTGTTGTTCATTTTATAAACGAAATTCCACGGGGAACGCAGGC
AAAGATGGAGATTGCAACTGACGAGGCCCGCACCCCCATTAAGCAAGACA
TCAAAAAAGGGGAACTACGCTTCTACAAATACGGACCTTCTGTCGTTAAC
TATGGGGCTATTCCACAGACATGGGAAGATCCATCTTCAGTCCACCCCGA
ATTAAACTTCTGTGGAGACGGCGATCCCGTCGATGTGTGTGAAATCGGCG
ATGCAGTTATGCCGTTTGGCTCTGTCTACACGGTCAAGGTTCTTGGATGC
CTTGCTCTCTTAGATGAGGGAGAAATTGACTGGAAAATCATCGGTATTAA
CACTGATGATCCGAAGGCCGGTGAGGTAAACGATATTGACGATGTTGAAC
GTGTCTTCCCTGGAAAGGTGCATGAGGTTCGAGAATGGTTCAGACTGTAC
AAAACTGCGGAAGGAAAGGGAGAGAACGAGTATGGATATAGTGGAGAGGC
AAAAAACTCAGGATTCGCCCAGACTGTCGTTTCTGAAACTCACAACAGTT
GGGCGGACCTAAAGAATGGCAAGATTGAGAACGAAGATGAGCTCTCTTTG
CAGTAG

protein sequence of Gchil9000.t1

>Gchil9000.t1 ID=Gchil9000.t1|Name=Gchil9000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MHHDSITDVPPIQTESVGELNTKSFRLFFRSAKDVQLSPWHDIPLYPDPS
DTSVVHFINEIPRGTQAKMEIATDEARTPIKQDIKKGELRFYKYGPSVVN
YGAIPQTWEDPSSVHPELNFCGDGDPVDVCEIGDAVMPFGSVYTVKVLGC
LALLDEGEIDWKIIGINTDDPKAGEVNDIDDVERVFPGKVHEVREWFRLY
KTAEGKGENEYGYSGEAKNSGFAQTVVSETHNSWADLKNGKIENEDELSL
Q*

mRNA from alignment at tig00004370_pilon:912930..913685+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9000.t1 ID=Gchil9000.t1|Name=Gchil9000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004370_pilon:912930..913685+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACCACGATTCAATCACAGACGTTCCGCCGATACAAACCGAATCAGT
TGGTGAATTAAATACGAAAAGCTTTCGTCTATTCTTTCGATCGGCCAAAG
ATGTTCAGTTATCGCCGTGGCATGATATCCCACTCTACCCGGATCCGTCC
GATACTTCTGTTGTTCATTTTATAAACGAAATTCCACGGGGAACGCAGGC
AAAGATGGAGATTGCAACTGACGAGGCCCGCACCCCCATTAAGCAAGACA
TCAAAAAAGGGGAACTACGCTTCTACAAATACGGACCTTCTGTCGTTAAC
TATGGGGCTATTCCACAGACATGGGAAGATCCATCTTCAGTCCACCCCGA
ATTAAACTTCTGTGGAGACGGCGATCCCGTCGATGTGTGTGAAATCGGCG
ATGCAGTTATGCCGTTTGGCTCTGTCTACACGGTCAAGGTTCTTGGATGC
CTTGCTCTCTTAGATGAGGGAGAAATTGACTGGAAAATCATCGGTATTAA
CACTGATGATCCGAAGGCCGGTGAGGTAAACGATATTGACGATGTTGAAC
GTGTCTTCCCTGGAAAGGTGCATGAGGTTCGAGAATGGTTCAGACTGTAC
AAAACTGCGGAAGGAAAGGGAGAGAACGAGTATGGATATAGTGGAGAGGC
AAAAAACTCAGGATTCGCCCAGACTGTCGTTTCTGAAACTCACAACAGTT
GGGCGGACCTAAAGAATGGCAAGATTGAGAACGAAGATGAGCTCTCTTTG
CAGTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:912930..913685+

>Gchil9000.t1 ID=Gchil9000.t1|Name=Gchil9000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00004370_pilon:912930..913685+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACCACGATTCAATCACAGACGTTCCGCCGATACAAACCGAATCAGT
TGGTGAATTAAATACGAAAAGCTTTCGTCTATTCTTTCGATCGGCCAAAG
ATGTTCAGTTATCGCCGTGGCATGATATCCCACTCTACCCGGATCCGTCC
GATACTTCTGTTGTTCATTTTATAAACGAAATTCCACGGGGAACGCAGGC
AAAGATGGAGATTGCAACTGACGAGGCCCGCACCCCCATTAAGCAAGACA
TCAAAAAAGGGGAACTACGCTTCTACAAATACGGACCTTCTGTCGTTAAC
TATGGGGCTATTCCACAGACATGGGAAGATCCATCTTCAGTCCACCCCGA
ATTAAACTTCTGTGGAGACGGCGATCCCGTCGATGTGTGTGAAATCGGCG
ATGCAGTTATGCCGTTTGGCTCTGTCTACACGGTCAAGGTTCTTGGATGC
CTTGCTCTCTTAGATGAGGGAGAAATTGACTGGAAAATCATCGGTATTAA
CACTGATGATCCGAAGGCCGGTGAGGTAAACGATATTGACGATGTTGAAC
GTGTCTTCCCTGGAAAGGTGCATGAGGTTCGAGAATGGTTCAGACTGTAC
AAAACTGCGGAAGGAAAGGGAGAGAACGAGTATGGATATAGTGGAGAGGC
AAAAAACTCAGGATTCGCCCAGACTGTCGTTTCTGAAACTCACAACAGTT
GGGCGGACCTAAAGAATGGCAAGATTGAGAACGAAGATGAGCTCTCTTTG
CAGTAG