Gchil8998.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8998.t1
Unique NameGchil8998.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length604
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:907873..909837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog743721.Psesu_2578
PFAMsKelch_1,Kelch_6
Max annot lvl135614|Xanthomonadales
Evalue8.56e-54
EggNOG OGsCOG3055@1|root,COG3055@2|Bacteria,1R9K3@1224|Proteobacteria,1S1R4@1236|Gammaproteobacteria,1X91T@135614|Xanthomonadales
DescriptionGalactose oxidase, central domain
COG categoryNU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8998Gchil8998Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 907873..909837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8998.t1Gchil8998.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 907873..909837 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8998.t1.stop1Gchil8998.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 907873..907875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8998.t1.CDS1Gchil8998.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 907873..908483 -
Gchil8998.t1.CDS2Gchil8998.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 908553..909209 -
Gchil8998.t1.CDS3Gchil8998.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 909294..909837 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8998.t1.exon1Gchil8998.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 907873..908483 -
Gchil8998.t1.exon2Gchil8998.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 908553..909209 -
Gchil8998.t1.exon3Gchil8998.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 909294..909837 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8998.t1.intron1Gchil8998.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 908484..908552 -
Gchil8998.t1.intron2Gchil8998.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 909210..909293 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8998.t1.start1Gchil8998.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 909835..909837 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8998.t1 ID=Gchil8998.t1|Name=Gchil8998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=604bp
MRSEYQLFVLFLFASSSLAALSWNKVSVSGSYPGRGETALSLCGGDKICL
LGGRGANRVHILNTQTRQWQPAKSNSLEMHHFQAFQGPDKCVWVAGAWTG
AFPAESTVDSIWRYCPDTDQWHKDVDIDRPRGSGGAFFYNGKVYLVTGNV
GGHREGAKVVPWFDSYDPATGKWERLPDMPNPRDHCNAVVKDNKVYVTGG
RRSTSDFPEFFDDTVAEVDVYDFASRKWSTLTGFSRPRGGTASAVLDGAI
YIMGGEGDNRAWTEVDVLNGASFQPGPSLPEPRHGTGIVSCNGAVWIAGG
ERVIGSGSPATSTYALYDGDEVPVCRSGSESSATTAAPTVTTDASTVSTD
APATQDPTPVPSSSNSAPPEETEDKPSAPNDTASGAVGADEIDVSSTPSK
TPKPLAEESATVESSTENSSNNAACFPSDATVELDDGTVKTMSSLRIGDR
VKVAHPKEYSEVYFFSHNHADKQSDFVNIKTSLDDAALTLSPGHFMYANG
ALVEASRVVVGDKVSVSHDSKIAEVTQVSRIKAKGLHNPHTVHGDIIVNG
VVASTLTSTLHPSLAKFILTPLKMVYRILQTRESMETFNKAVLRTLDVTY
WRN*
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spliced messenger RNA

>Gchil8998.t1 ID=Gchil8998.t1|Name=Gchil8998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00004370_pilon:907873..909837- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCGAGTATCAACTATTCGTACTATTCTTGTTCGCCTCTTCCTC
GCTAGCCGCTCTATCCTGGAACAAAGTCTCCGTGTCTGGTAGCTACCCTG
GTCGCGGCGAAACCGCTCTCTCTTTATGTGGCGGCGACAAAATTTGTCTC
CTTGGCGGACGAGGCGCCAACCGCGTCCACATCCTCAATACGCAAACTCG
TCAATGGCAACCTGCGAAATCTAACTCCTTGGAAATGCATCACTTCCAAG
CCTTCCAAGGTCCTGATAAGTGTGTTTGGGTAGCGGGTGCCTGGACTGGT
GCCTTCCCCGCTGAGTCAACTGTCGACAGCATCTGGCGTTATTGTCCGGA
TACTGACCAGTGGCATAAGGATGTCGATATTGATCGCCCCAGAGGTTCTG
GTGGCGCGTTCTTCTACAACGGGAAGGTCTATCTCGTCACTGGTAACGTT
GGCGGTCATCGCGAGGGTGCAAAGGTCGTCCCGTGGTTCGATTCCTATGA
CCCTGCTACAGGCAAGTGGGAAAGACTTCCTGACATGCCCAATCCGCGTG
ATCATTGCAATGCTGTGGTGAAGGATAACAAGGTCTACGTCACCGGCGGC
CGTCGCTCAACTTCTGATTTTCCAGAATTCTTTGACGACACTGTTGCAGA
GGTTGATGTGTATGACTTTGCCTCTCGAAAGTGGAGTACTTTGACGGGAT
TTTCCCGTCCGCGTGGCGGTACTGCCTCTGCTGTGCTCGATGGAGCTATA
TATATTATGGGCGGCGAAGGCGACAATCGAGCGTGGACTGAAGTTGATGT
GCTCAACGGTGCTTCGTTTCAACCTGGTCCATCTCTGCCAGAACCCCGCC
ATGGTACGGGAATTGTTTCATGTAATGGAGCCGTTTGGATTGCTGGTGGC
GAGCGCGTCATCGGATCAGGCAGTCCCGCGACTAGCACATACGCTCTGTA
TGATGGTGACGAGGTGCCTGTCTGTCGCAGCGGCTCTGAATCCAGTGCTA
CGACTGCTGCACCCACTGTTACAACTGATGCTTCTACTGTTTCTACCGAT
GCCCCTGCCACCCAGGATCCCACGCCGGTTCCCTCTTCTTCAAATTCCGC
TCCGCCTGAGGAGACCGAGGACAAGCCTTCTGCTCCCAACGATACTGCTA
GTGGAGCCGTTGGTGCCGATGAAATCGATGTTAGCAGCACTCCATCCAAA
ACCCCAAAACCACTAGCAGAAGAATCTGCCACGGTCGAAAGCTCCACTGA
AAATAGCAGCAATAACGCTGCTTGTTTTCCGTCTGATGCCACTGTGGAGC
TCGACGATGGTACAGTGAAGACAATGAGCTCGTTGCGCATCGGCGACCGC
GTGAAGGTTGCCCACCCCAAAGAGTACAGCGAGGTTTACTTCTTTTCACA
CAATCATGCAGACAAGCAATCCGATTTTGTTAATATCAAAACTTCATTGG
ATGACGCGGCCCTGACTCTGTCACCGGGACACTTTATGTATGCAAACGGA
GCTTTGGTTGAAGCGTCGCGCGTGGTTGTTGGAGATAAGGTCTCCGTATC
GCATGACTCAAAGATTGCAGAAGTGACCCAAGTGTCTCGGATCAAGGCAA
AAGGTTTACACAACCCACACACTGTGCACGGAGATATCATTGTCAATGGT
GTGGTTGCGAGCACTTTAACATCTACGCTTCACCCATCTCTGGCAAAATT
CATACTGACTCCATTGAAGATGGTATACCGTATTTTGCAAACACGTGAGA
GCATGGAAACCTTTAACAAAGCGGTGCTTCGTACCCTAGATGTGACATAT
TGGAGAAATTAA
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protein sequence of Gchil8998.t1

>Gchil8998.t1 ID=Gchil8998.t1|Name=Gchil8998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=604bp
MRSEYQLFVLFLFASSSLAALSWNKVSVSGSYPGRGETALSLCGGDKICL
LGGRGANRVHILNTQTRQWQPAKSNSLEMHHFQAFQGPDKCVWVAGAWTG
AFPAESTVDSIWRYCPDTDQWHKDVDIDRPRGSGGAFFYNGKVYLVTGNV
GGHREGAKVVPWFDSYDPATGKWERLPDMPNPRDHCNAVVKDNKVYVTGG
RRSTSDFPEFFDDTVAEVDVYDFASRKWSTLTGFSRPRGGTASAVLDGAI
YIMGGEGDNRAWTEVDVLNGASFQPGPSLPEPRHGTGIVSCNGAVWIAGG
ERVIGSGSPATSTYALYDGDEVPVCRSGSESSATTAAPTVTTDASTVSTD
APATQDPTPVPSSSNSAPPEETEDKPSAPNDTASGAVGADEIDVSSTPSK
TPKPLAEESATVESSTENSSNNAACFPSDATVELDDGTVKTMSSLRIGDR
VKVAHPKEYSEVYFFSHNHADKQSDFVNIKTSLDDAALTLSPGHFMYANG
ALVEASRVVVGDKVSVSHDSKIAEVTQVSRIKAKGLHNPHTVHGDIIVNG
VVASTLTSTLHPSLAKFILTPLKMVYRILQTRESMETFNKAVLRTLDVTY
WRN*
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mRNA from alignment at tig00004370_pilon:907873..909837-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8998.t1 ID=Gchil8998.t1|Name=Gchil8998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00004370_pilon:907873..909837- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTCCGAGTATCAACTATTCGTACTATTCTTGTTCGCCTCTTCCTC
GCTAGCCGCTCTATCCTGGAACAAAGTCTCCGTGTCTGGTAGCTACCCTG
GTCGCGGCGAAACCGCTCTCTCTTTATGTGGCGGCGACAAAATTTGTCTC
CTTGGCGGACGAGGCGCCAACCGCGTCCACATCCTCAATACGCAAACTCG
TCAATGGCAACCTGCGAAATCTAACTCCTTGGAAATGCATCACTTCCAAG
CCTTCCAAGGTCCTGATAAGTGTGTTTGGGTAGCGGGTGCCTGGACTGGT
GCCTTCCCCGCTGAGTCAACTGTCGACAGCATCTGGCGTTATTGTCCGGA
TACTGACCAGTGGCATAAGGATGTCGATATTGATCGCCCCAGAGGTTCTG
GTGGCGCGTTCTTCTACAACGGGAAGGTCTATCTCGTCACTGGTAACGTT
GGCGGTCATCGCGAGGGTGCAAAGGTCGTCCCGTGGTTCGATTCCTATGA
CCCTGCTACAGGCAAGTGGGAAAGACTTCCTGACATGCCCAATCGTAAGT
TATAATCTCCCCCTCTTTCATTGTTCACGTGTCATCTCGCACAGTGTTTC
TCACGTCAAACTCATGCAAACGACGAAGCGCGTGATCATTGCAATGCTGT
GGTGAAGGATAACAAGGTCTACGTCACCGGCGGCCGTCGCTCAACTTCTG
ATTTTCCAGAATTCTTTGACGACACTGTTGCAGAGGTTGATGTGTATGAC
TTTGCCTCTCGAAAGTGGAGTACTTTGACGGGATTTTCCCGTCCGCGTGG
CGGTACTGCCTCTGCTGTGCTCGATGGAGCTATATATATTATGGGCGGCG
AAGGCGACAATCGAGCGTGGACTGAAGTTGATGTGCTCAACGGTGCTTCG
TTTCAACCTGGTCCATCTCTGCCAGAACCCCGCCATGGTACGGGAATTGT
TTCATGTAATGGAGCCGTTTGGATTGCTGGTGGCGAGCGCGTCATCGGAT
CAGGCAGTCCCGCGACTAGCACATACGCTCTGTATGATGGTGACGAGGTG
CCTGTCTGTCGCAGCGGCTCTGAATCCAGTGCTACGACTGCTGCACCCAC
TGTTACAACTGATGCTTCTACTGTTTCTACCGATGCCCCTGCCACCCAGG
ATCCCACGCCGGTTCCCTCTTCTTCAAATTCCGCTCCGCCTGAGGAGACC
GAGGACAAGCCTTCTGCTCCCAACGATACTGCTAGTGGAGCCGTTGGTGC
CGATGAAATCGATGTTAGCAGCACTCCATCCAAAAGTAAGTTGTTCTTTC
CGTATGTGTCGCGTGACGCCGCTTTCTAACCATTTTTTCTTGTATTACAC
ACAGCCCCAAAACCACTAGCAGAAGAATCTGCCACGGTCGAAAGCTCCAC
TGAAAATAGCAGCAATAACGCTGCTTGTTTTCCGTCTGATGCCACTGTGG
AGCTCGACGATGGTACAGTGAAGACAATGAGCTCGTTGCGCATCGGCGAC
CGCGTGAAGGTTGCCCACCCCAAAGAGTACAGCGAGGTTTACTTCTTTTC
ACACAATCATGCAGACAAGCAATCCGATTTTGTTAATATCAAAACTTCAT
TGGATGACGCGGCCCTGACTCTGTCACCGGGACACTTTATGTATGCAAAC
GGAGCTTTGGTTGAAGCGTCGCGCGTGGTTGTTGGAGATAAGGTCTCCGT
ATCGCATGACTCAAAGATTGCAGAAGTGACCCAAGTGTCTCGGATCAAGG
CAAAAGGTTTACACAACCCACACACTGTGCACGGAGATATCATTGTCAAT
GGTGTGGTTGCGAGCACTTTAACATCTACGCTTCACCCATCTCTGGCAAA
ATTCATACTGACTCCATTGAAGATGGTATACCGTATTTTGCAAACACGTG
AGAGCATGGAAACCTTTAACAAAGCGGTGCTTCGTACCCTAGATGTGACA
TATTGGAGAAATTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:907873..909837-

>Gchil8998.t1 ID=Gchil8998.t1|Name=Gchil8998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00004370_pilon:907873..909837- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTCCGAGTATCAACTATTCGTACTATTCTTGTTCGCCTCTTCCTC
GCTAGCCGCTCTATCCTGGAACAAAGTCTCCGTGTCTGGTAGCTACCCTG
GTCGCGGCGAAACCGCTCTCTCTTTATGTGGCGGCGACAAAATTTGTCTC
CTTGGCGGACGAGGCGCCAACCGCGTCCACATCCTCAATACGCAAACTCG
TCAATGGCAACCTGCGAAATCTAACTCCTTGGAAATGCATCACTTCCAAG
CCTTCCAAGGTCCTGATAAGTGTGTTTGGGTAGCGGGTGCCTGGACTGGT
GCCTTCCCCGCTGAGTCAACTGTCGACAGCATCTGGCGTTATTGTCCGGA
TACTGACCAGTGGCATAAGGATGTCGATATTGATCGCCCCAGAGGTTCTG
GTGGCGCGTTCTTCTACAACGGGAAGGTCTATCTCGTCACTGGTAACGTT
GGCGGTCATCGCGAGGGTGCAAAGGTCGTCCCGTGGTTCGATTCCTATGA
CCCTGCTACAGGCAAGTGGGAAAGACTTCCTGACATGCCCAATCCGCGTG
ATCATTGCAATGCTGTGGTGAAGGATAACAAGGTCTACGTCACCGGCGGC
CGTCGCTCAACTTCTGATTTTCCAGAATTCTTTGACGACACTGTTGCAGA
GGTTGATGTGTATGACTTTGCCTCTCGAAAGTGGAGTACTTTGACGGGAT
TTTCCCGTCCGCGTGGCGGTACTGCCTCTGCTGTGCTCGATGGAGCTATA
TATATTATGGGCGGCGAAGGCGACAATCGAGCGTGGACTGAAGTTGATGT
GCTCAACGGTGCTTCGTTTCAACCTGGTCCATCTCTGCCAGAACCCCGCC
ATGGTACGGGAATTGTTTCATGTAATGGAGCCGTTTGGATTGCTGGTGGC
GAGCGCGTCATCGGATCAGGCAGTCCCGCGACTAGCACATACGCTCTGTA
TGATGGTGACGAGGTGCCTGTCTGTCGCAGCGGCTCTGAATCCAGTGCTA
CGACTGCTGCACCCACTGTTACAACTGATGCTTCTACTGTTTCTACCGAT
GCCCCTGCCACCCAGGATCCCACGCCGGTTCCCTCTTCTTCAAATTCCGC
TCCGCCTGAGGAGACCGAGGACAAGCCTTCTGCTCCCAACGATACTGCTA
GTGGAGCCGTTGGTGCCGATGAAATCGATGTTAGCAGCACTCCATCCAAA
ACCCCAAAACCACTAGCAGAAGAATCTGCCACGGTCGAAAGCTCCACTGA
AAATAGCAGCAATAACGCTGCTTGTTTTCCGTCTGATGCCACTGTGGAGC
TCGACGATGGTACAGTGAAGACAATGAGCTCGTTGCGCATCGGCGACCGC
GTGAAGGTTGCCCACCCCAAAGAGTACAGCGAGGTTTACTTCTTTTCACA
CAATCATGCAGACAAGCAATCCGATTTTGTTAATATCAAAACTTCATTGG
ATGACGCGGCCCTGACTCTGTCACCGGGACACTTTATGTATGCAAACGGA
GCTTTGGTTGAAGCGTCGCGCGTGGTTGTTGGAGATAAGGTCTCCGTATC
GCATGACTCAAAGATTGCAGAAGTGACCCAAGTGTCTCGGATCAAGGCAA
AAGGTTTACACAACCCACACACTGTGCACGGAGATATCATTGTCAATGGT
GTGGTTGCGAGCACTTTAACATCTACGCTTCACCCATCTCTGGCAAAATT
CATACTGACTCCATTGAAGATGGTATACCGTATTTTGCAAACACGTGAGA
GCATGGAAACCTTTAACAAAGCGGTGCTTCGTACCCTAGATGTGACATAT
TGGAGAAATTAA
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