Gchil8993.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8993.t1
Unique Name	Gchil8993.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:898211..899848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003060326.1
PFAMs	Exo_endo_phos
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18764,ko:K19612
Evalue	1.05e-91
EggNOG OGs	COG5239@1\|root,KOG0620@2759\|Eukaryota
EC	3.1.13.4
Description	poly(A)-specific ribonuclease activity
COG category	A
BRITE	ko00000,ko01000,ko03019,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8993	Gchil8993	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 898211..899848 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8993.t1.start1	Gchil8993.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 898211..898213 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8993.t1.CDS1	Gchil8993.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 898211..899848 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8993.t1.exon1	Gchil8993.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 898211..899848 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8993.t1.stop1	Gchil8993.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 899846..899848 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8993.t1	Gchil8993.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 898211..899848 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:898211..899848+
coding sequence from alignment at tig00004370_pilon:898211..899848+

mRNA sequence

>Gchil8993.t1 ID=Gchil8993.t1|Name=Gchil8993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp
MTRGRPRCALSHPTRPQTLPPPATSKPPPSQLLSRPLNHLVFAHQRPPPA
ISHRLRTVTASNVVTKSTTMLASRATATATAFAFSPAPLRLSPSTWQAAT
SAFPHWKPTPWRPFSNLRPFPKNPSMSTTPKPQRAGPGSNDGNGASNGNS
PSDFGQGELFASSPELEQLAAKSSDAPILTRIVSYNVLSSSLAADSHFPN
CDPSNLNAATRLKRLLIKLEGPVASRSIICLQEVSLSWSGPLHTFFANRG
FHLLLASHGSYFNGYMGEGLAFPLDLYEAVDLHIERLTDFIRWPQVPKLV
GIPGILSEMRARLIKAVQALGGFSKPSRHAKREPWAHARGRHNRFIFARL
RSRTNGAKICVGTYHMPCIFWSPPVMMIHSALVVSRFQKLCADDYGVLAG
DFNIKPTDETYAMILRGTVDEQHEDFPPNAPDGSPASSWFPKLSAPMKSA
YREVLGNEPDFTNYAKVENQPVFIETLDYLFCTSDVEVVDVIRLPKREAV
QGPYPDATEPSDHVMIGATLRLPAPSRKGEREKAAVSAGAYEDGS*

spliced messenger RNA

>Gchil8993.t1 ID=Gchil8993.t1|Name=Gchil8993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004370_pilon:898211..899848+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCGCGGTCGCCCACGCTGCGCCTTATCCCATCCAACACGCCCGCA
AACCCTCCCGCCCCCCGCCACCTCAAAACCACCGCCGTCGCAACTGCTCT
CAAGGCCGCTCAATCATCTCGTGTTCGCCCATCAGCGCCCACCTCCCGCT
ATTTCTCATCGTCTACGAACCGTCACTGCTTCCAACGTCGTCACAAAGTC
CACCACAATGCTCGCCTCGCGCGCTACCGCCACCGCCACCGCATTCGCTT
TCTCACCGGCTCCACTCCGCCTCTCGCCCAGCACGTGGCAAGCAGCCACC
AGCGCCTTTCCGCACTGGAAACCTACCCCATGGCGCCCCTTTTCCAATCT
GCGCCCCTTCCCGAAGAACCCGTCCATGTCCACCACCCCAAAGCCACAGC
GCGCCGGCCCCGGCTCTAATGACGGCAACGGTGCATCCAACGGCAACTCT
CCGTCTGATTTTGGGCAGGGCGAGCTCTTCGCTTCGTCTCCGGAGCTAGA
ACAGCTAGCAGCCAAGTCTTCCGATGCTCCCATTCTCACGCGTATCGTTT
CGTATAATGTACTTTCGTCCTCCCTGGCCGCCGACTCGCACTTTCCGAAC
TGCGATCCGTCCAACTTGAACGCTGCCACGCGCTTGAAGCGCCTTCTCAT
CAAGTTGGAAGGACCAGTCGCTTCGAGGTCTATCATATGCCTGCAGGAGG
TTTCGCTTTCTTGGAGTGGTCCGTTGCATACATTTTTTGCCAATCGAGGC
TTTCATCTGTTGTTGGCTTCGCACGGTTCTTATTTTAATGGATACATGGG
AGAGGGGCTAGCATTCCCGCTTGACTTGTATGAAGCTGTTGATCTTCACA
TCGAGCGACTCACAGACTTTATTCGCTGGCCGCAAGTCCCGAAACTGGTC
GGCATACCAGGCATACTTTCTGAGATGCGTGCGCGTTTGATCAAGGCTGT
ACAAGCGTTGGGCGGCTTCTCGAAGCCATCCAGACATGCAAAAAGAGAGC
CATGGGCGCACGCTAGAGGGCGTCACAACCGCTTTATCTTTGCACGCTTG
CGTTCTCGTACCAATGGAGCCAAAATTTGTGTGGGCACCTATCACATGCC
ATGCATTTTCTGGTCGCCGCCTGTGATGATGATTCACTCGGCATTGGTTG
TGAGTCGCTTCCAAAAACTATGCGCCGATGACTATGGCGTGCTCGCGGGC
GATTTCAACATAAAGCCGACGGATGAGACGTACGCCATGATTTTGCGGGG
TACTGTGGATGAACAGCATGAAGACTTTCCACCCAATGCACCGGATGGGT
CGCCTGCGTCGTCATGGTTTCCCAAGCTGTCAGCACCTATGAAGAGTGCT
TATCGTGAGGTGCTTGGTAATGAGCCCGATTTCACCAACTACGCCAAGGT
TGAAAATCAACCTGTGTTTATAGAAACGCTCGACTACCTATTTTGCACAT
CGGATGTAGAAGTTGTAGATGTAATCAGATTGCCAAAGAGAGAAGCTGTG
CAAGGTCCGTACCCCGACGCGACAGAGCCTTCGGACCACGTGATGATTGG
AGCTACTCTGAGGTTACCGGCCCCGTCTCGTAAAGGCGAACGGGAAAAAG
CAGCCGTGAGCGCTGGCGCCTACGAGGATGGATCGTGA

protein sequence of Gchil8993.t1

>Gchil8993.t1 ID=Gchil8993.t1|Name=Gchil8993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=546bp
MTRGRPRCALSHPTRPQTLPPPATSKPPPSQLLSRPLNHLVFAHQRPPPA
ISHRLRTVTASNVVTKSTTMLASRATATATAFAFSPAPLRLSPSTWQAAT
SAFPHWKPTPWRPFSNLRPFPKNPSMSTTPKPQRAGPGSNDGNGASNGNS
PSDFGQGELFASSPELEQLAAKSSDAPILTRIVSYNVLSSSLAADSHFPN
CDPSNLNAATRLKRLLIKLEGPVASRSIICLQEVSLSWSGPLHTFFANRG
FHLLLASHGSYFNGYMGEGLAFPLDLYEAVDLHIERLTDFIRWPQVPKLV
GIPGILSEMRARLIKAVQALGGFSKPSRHAKREPWAHARGRHNRFIFARL
RSRTNGAKICVGTYHMPCIFWSPPVMMIHSALVVSRFQKLCADDYGVLAG
DFNIKPTDETYAMILRGTVDEQHEDFPPNAPDGSPASSWFPKLSAPMKSA
YREVLGNEPDFTNYAKVENQPVFIETLDYLFCTSDVEVVDVIRLPKREAV
QGPYPDATEPSDHVMIGATLRLPAPSRKGEREKAAVSAGAYEDGS*

mRNA from alignment at tig00004370_pilon:898211..899848+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8993.t1 ID=Gchil8993.t1|Name=Gchil8993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004370_pilon:898211..899848+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCCGCGGTCGCCCACGCTGCGCCTTATCCCATCCAACACGCCCGCA
AACCCTCCCGCCCCCCGCCACCTCAAAACCACCGCCGTCGCAACTGCTCT
CAAGGCCGCTCAATCATCTCGTGTTCGCCCATCAGCGCCCACCTCCCGCT
ATTTCTCATCGTCTACGAACCGTCACTGCTTCCAACGTCGTCACAAAGTC
CACCACAATGCTCGCCTCGCGCGCTACCGCCACCGCCACCGCATTCGCTT
TCTCACCGGCTCCACTCCGCCTCTCGCCCAGCACGTGGCAAGCAGCCACC
AGCGCCTTTCCGCACTGGAAACCTACCCCATGGCGCCCCTTTTCCAATCT
GCGCCCCTTCCCGAAGAACCCGTCCATGTCCACCACCCCAAAGCCACAGC
GCGCCGGCCCCGGCTCTAATGACGGCAACGGTGCATCCAACGGCAACTCT
CCGTCTGATTTTGGGCAGGGCGAGCTCTTCGCTTCGTCTCCGGAGCTAGA
ACAGCTAGCAGCCAAGTCTTCCGATGCTCCCATTCTCACGCGTATCGTTT
CGTATAATGTACTTTCGTCCTCCCTGGCCGCCGACTCGCACTTTCCGAAC
TGCGATCCGTCCAACTTGAACGCTGCCACGCGCTTGAAGCGCCTTCTCAT
CAAGTTGGAAGGACCAGTCGCTTCGAGGTCTATCATATGCCTGCAGGAGG
TTTCGCTTTCTTGGAGTGGTCCGTTGCATACATTTTTTGCCAATCGAGGC
TTTCATCTGTTGTTGGCTTCGCACGGTTCTTATTTTAATGGATACATGGG
AGAGGGGCTAGCATTCCCGCTTGACTTGTATGAAGCTGTTGATCTTCACA
TCGAGCGACTCACAGACTTTATTCGCTGGCCGCAAGTCCCGAAACTGGTC
GGCATACCAGGCATACTTTCTGAGATGCGTGCGCGTTTGATCAAGGCTGT
ACAAGCGTTGGGCGGCTTCTCGAAGCCATCCAGACATGCAAAAAGAGAGC
CATGGGCGCACGCTAGAGGGCGTCACAACCGCTTTATCTTTGCACGCTTG
CGTTCTCGTACCAATGGAGCCAAAATTTGTGTGGGCACCTATCACATGCC
ATGCATTTTCTGGTCGCCGCCTGTGATGATGATTCACTCGGCATTGGTTG
TGAGTCGCTTCCAAAAACTATGCGCCGATGACTATGGCGTGCTCGCGGGC
GATTTCAACATAAAGCCGACGGATGAGACGTACGCCATGATTTTGCGGGG
TACTGTGGATGAACAGCATGAAGACTTTCCACCCAATGCACCGGATGGGT
CGCCTGCGTCGTCATGGTTTCCCAAGCTGTCAGCACCTATGAAGAGTGCT
TATCGTGAGGTGCTTGGTAATGAGCCCGATTTCACCAACTACGCCAAGGT
TGAAAATCAACCTGTGTTTATAGAAACGCTCGACTACCTATTTTGCACAT
CGGATGTAGAAGTTGTAGATGTAATCAGATTGCCAAAGAGAGAAGCTGTG
CAAGGTCCGTACCCCGACGCGACAGAGCCTTCGGACCACGTGATGATTGG
AGCTACTCTGAGGTTACCGGCCCCGTCTCGTAAAGGCGAACGGGAAAAAG
CAGCCGTGAGCGCTGGCGCCTACGAGGATGGATCGTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:898211..899848+

>Gchil8993.t1 ID=Gchil8993.t1|Name=Gchil8993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00004370_pilon:898211..899848+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCCGCGGTCGCCCACGCTGCGCCTTATCCCATCCAACACGCCCGCA
AACCCTCCCGCCCCCCGCCACCTCAAAACCACCGCCGTCGCAACTGCTCT
CAAGGCCGCTCAATCATCTCGTGTTCGCCCATCAGCGCCCACCTCCCGCT
ATTTCTCATCGTCTACGAACCGTCACTGCTTCCAACGTCGTCACAAAGTC
CACCACAATGCTCGCCTCGCGCGCTACCGCCACCGCCACCGCATTCGCTT
TCTCACCGGCTCCACTCCGCCTCTCGCCCAGCACGTGGCAAGCAGCCACC
AGCGCCTTTCCGCACTGGAAACCTACCCCATGGCGCCCCTTTTCCAATCT
GCGCCCCTTCCCGAAGAACCCGTCCATGTCCACCACCCCAAAGCCACAGC
GCGCCGGCCCCGGCTCTAATGACGGCAACGGTGCATCCAACGGCAACTCT
CCGTCTGATTTTGGGCAGGGCGAGCTCTTCGCTTCGTCTCCGGAGCTAGA
ACAGCTAGCAGCCAAGTCTTCCGATGCTCCCATTCTCACGCGTATCGTTT
CGTATAATGTACTTTCGTCCTCCCTGGCCGCCGACTCGCACTTTCCGAAC
TGCGATCCGTCCAACTTGAACGCTGCCACGCGCTTGAAGCGCCTTCTCAT
CAAGTTGGAAGGACCAGTCGCTTCGAGGTCTATCATATGCCTGCAGGAGG
TTTCGCTTTCTTGGAGTGGTCCGTTGCATACATTTTTTGCCAATCGAGGC
TTTCATCTGTTGTTGGCTTCGCACGGTTCTTATTTTAATGGATACATGGG
AGAGGGGCTAGCATTCCCGCTTGACTTGTATGAAGCTGTTGATCTTCACA
TCGAGCGACTCACAGACTTTATTCGCTGGCCGCAAGTCCCGAAACTGGTC
GGCATACCAGGCATACTTTCTGAGATGCGTGCGCGTTTGATCAAGGCTGT
ACAAGCGTTGGGCGGCTTCTCGAAGCCATCCAGACATGCAAAAAGAGAGC
CATGGGCGCACGCTAGAGGGCGTCACAACCGCTTTATCTTTGCACGCTTG
CGTTCTCGTACCAATGGAGCCAAAATTTGTGTGGGCACCTATCACATGCC
ATGCATTTTCTGGTCGCCGCCTGTGATGATGATTCACTCGGCATTGGTTG
TGAGTCGCTTCCAAAAACTATGCGCCGATGACTATGGCGTGCTCGCGGGC
GATTTCAACATAAAGCCGACGGATGAGACGTACGCCATGATTTTGCGGGG
TACTGTGGATGAACAGCATGAAGACTTTCCACCCAATGCACCGGATGGGT
CGCCTGCGTCGTCATGGTTTCCCAAGCTGTCAGCACCTATGAAGAGTGCT
TATCGTGAGGTGCTTGGTAATGAGCCCGATTTCACCAACTACGCCAAGGT
TGAAAATCAACCTGTGTTTATAGAAACGCTCGACTACCTATTTTGCACAT
CGGATGTAGAAGTTGTAGATGTAATCAGATTGCCAAAGAGAGAAGCTGTG
CAAGGTCCGTACCCCGACGCGACAGAGCCTTCGGACCACGTGATGATTGG
AGCTACTCTGAGGTTACCGGCCCCGTCTCGTAAAGGCGAACGGGAAAAAG
CAGCCGTGAGCGCTGGCGCCTACGAGGATGGATCGTGA