Gchil899.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil899.t1
Unique Name	Gchil899.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	604

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:1085430..1087241 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1541065.JRFE01000028_gene3421
Max annot lvl	1117\|Cyanobacteria
Evalue	1.49e-227
EggNOG OGs	COG0671@1\|root,COG0671@2\|Bacteria,1G24P@1117\|Cyanobacteria,3VIMU@52604\|Pleurocapsales
Description	phosphoesterase, PA-phosphatase related
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil899	Gchil899	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 1085430..1087241 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil899.t1.stop1	Gchil899.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 1085430..1085432 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil899.t1.CDS1	Gchil899.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 1085430..1087241 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil899.t1.exon1	Gchil899.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 1085430..1087241 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil899.t1.start1	Gchil899.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 1087239..1087241 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil899.t1	Gchil899.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 1085430..1087241 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:1085430..1087241-
coding sequence from alignment at tig00000017_pilon:1085430..1087241-

mRNA sequence

>Gchil899.t1 ID=Gchil899.t1|Name=Gchil899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=604bp
MSATKHTNRLDSAYSVRQQAANLAKRRPHATHVANAEELRYRFPFDGSSN
QGMPSHLASYTKGLPHDVETGVLVNPNDFQAFIRAMDSGDTFSIRDVPLG
PQIPEPRFSSGIAKGADVRAWESMAAGQTYDLEGPDAQSLTMPPAPALDS
AELVTEISESYLMALLRDVPFIEFSSNSVLVDAIESLNSTKWIKYGIDPS
TIPLSLTQAERGRLRDQVDVQNVFRGVTRGDHEGPYISQFLLIGNTGIAD
GNQIHDGLIQYGAHRVDQKVRVAEKERDFMTTWQSFIDVQNGADVRGREQ
YEDGFRFITTPRDLATYVHFDALYQAYLNACLILLGMKVPFDKGLPYQLD
DDIDHQQTFATFGGPHILSLVTEVATRALKAVRFQKFNVHRRLRPEAVAG
RVEKFRTKSGDQLYAGVKPLFDELDKDMLSKIGMHNQKQNNKSDNGQARS
EDEGAGANYLLPMAFPEGSPMHPSYGAGHATVAGACVTILKAFFDHGYEL
RMKDSSGKMQPFAFVANAEGTSLVNQVGNYDNKALTVEGELNKVCSNICI
GRNWAGVHYFSDYIESIRVGEEIAIGVLEEQKLTYGENFSISVPLFDGSV
YRI*

spliced messenger RNA

>Gchil899.t1 ID=Gchil899.t1|Name=Gchil899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000017_pilon:1085430..1087241- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCACCAAGCACACCAACCGCCTGGACTCCGCCTACAGCGTGCG
CCAACAGGCCGCAAATCTCGCCAAGAGACGTCCGCATGCCACCCACGTCG
CCAATGCCGAGGAACTTCGCTACCGCTTCCCGTTCGACGGCTCATCCAAC
CAGGGCATGCCGTCCCACCTCGCCAGCTACACAAAGGGCTTACCACACGA
TGTTGAAACCGGCGTTTTGGTCAACCCTAATGATTTCCAGGCTTTCATTC
GCGCCATGGACTCCGGCGACACGTTCTCCATTCGTGACGTCCCGCTTGGC
CCGCAGATCCCCGAGCCGCGCTTCAGCTCTGGTATCGCAAAAGGCGCTGA
CGTGCGTGCGTGGGAGTCCATGGCGGCCGGACAGACTTATGATCTGGAGG
GCCCCGATGCCCAATCCCTCACCATGCCACCAGCTCCGGCCTTGGATAGT
GCCGAACTCGTAACCGAGATTTCTGAAAGCTACTTGATGGCCTTGCTCCG
CGACGTTCCGTTCATCGAATTTAGCAGCAACTCTGTGCTCGTCGATGCCA
TTGAAAGCTTGAACTCTACCAAGTGGATCAAGTATGGCATTGATCCGTCC
ACCATTCCCTTGTCTCTCACTCAAGCGGAACGCGGTCGCCTTCGAGATCA
AGTTGATGTGCAAAACGTTTTCCGTGGAGTTACCAGAGGTGATCACGAAG
GCCCATACATTTCCCAATTCCTTCTTATCGGAAATACCGGCATTGCGGAT
GGAAATCAAATCCACGACGGCTTGATTCAGTACGGCGCTCATCGCGTGGA
TCAGAAGGTGCGAGTGGCCGAGAAGGAACGCGACTTTATGACCACATGGC
AGTCGTTCATCGACGTTCAAAACGGTGCCGACGTGCGCGGCAGAGAGCAA
TACGAGGACGGTTTCCGATTCATTACCACGCCGCGTGACTTGGCTACATA
CGTTCATTTTGATGCCTTGTACCAGGCGTATTTGAATGCATGCCTCATCC
TGCTTGGAATGAAGGTTCCCTTCGACAAAGGATTGCCGTATCAACTGGAT
GATGACATTGATCATCAACAAACGTTCGCCACTTTTGGAGGACCTCATAT
CCTTTCGCTGGTGACCGAGGTGGCCACGCGCGCGTTGAAGGCAGTGCGAT
TCCAAAAGTTTAACGTGCACAGACGCCTTCGCCCCGAGGCAGTGGCCGGT
CGCGTCGAGAAGTTCCGCACAAAGAGCGGTGACCAACTGTACGCCGGTGT
GAAGCCTCTATTTGACGAACTTGACAAGGATATGTTATCCAAGATTGGAA
TGCACAACCAAAAGCAAAACAATAAGTCGGACAACGGACAGGCTAGAAGC
GAGGATGAGGGAGCTGGTGCCAACTACTTGTTGCCCATGGCGTTCCCAGA
GGGAAGTCCCATGCATCCAAGTTACGGTGCCGGTCATGCGACTGTGGCGG
GTGCGTGTGTAACAATTCTCAAGGCGTTCTTTGACCATGGGTACGAATTG
CGCATGAAGGATTCGAGCGGTAAGATGCAACCGTTTGCCTTCGTGGCGAA
TGCCGAAGGTACCAGCCTTGTGAACCAGGTTGGTAACTACGATAATAAGG
CGTTGACAGTTGAGGGTGAATTGAACAAGGTTTGCTCAAACATCTGTATA
GGCCGCAACTGGGCTGGTGTTCACTACTTCAGTGACTACATTGAATCGAT
CAGGGTCGGCGAAGAAATCGCCATTGGAGTGTTGGAAGAGCAGAAATTGA
CGTACGGCGAAAACTTCTCCATATCCGTTCCCCTGTTTGACGGCTCTGTG
TACCGCATTTAG

protein sequence of Gchil899.t1

>Gchil899.t1 ID=Gchil899.t1|Name=Gchil899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=604bp
MSATKHTNRLDSAYSVRQQAANLAKRRPHATHVANAEELRYRFPFDGSSN
QGMPSHLASYTKGLPHDVETGVLVNPNDFQAFIRAMDSGDTFSIRDVPLG
PQIPEPRFSSGIAKGADVRAWESMAAGQTYDLEGPDAQSLTMPPAPALDS
AELVTEISESYLMALLRDVPFIEFSSNSVLVDAIESLNSTKWIKYGIDPS
TIPLSLTQAERGRLRDQVDVQNVFRGVTRGDHEGPYISQFLLIGNTGIAD
GNQIHDGLIQYGAHRVDQKVRVAEKERDFMTTWQSFIDVQNGADVRGREQ
YEDGFRFITTPRDLATYVHFDALYQAYLNACLILLGMKVPFDKGLPYQLD
DDIDHQQTFATFGGPHILSLVTEVATRALKAVRFQKFNVHRRLRPEAVAG
RVEKFRTKSGDQLYAGVKPLFDELDKDMLSKIGMHNQKQNNKSDNGQARS
EDEGAGANYLLPMAFPEGSPMHPSYGAGHATVAGACVTILKAFFDHGYEL
RMKDSSGKMQPFAFVANAEGTSLVNQVGNYDNKALTVEGELNKVCSNICI
GRNWAGVHYFSDYIESIRVGEEIAIGVLEEQKLTYGENFSISVPLFDGSV
YRI*

mRNA from alignment at tig00000017_pilon:1085430..1087241-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil899.t1 ID=Gchil899.t1|Name=Gchil899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000017_pilon:1085430..1087241- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCACCAAGCACACCAACCGCCTGGACTCCGCCTACAGCGTGCG
CCAACAGGCCGCAAATCTCGCCAAGAGACGTCCGCATGCCACCCACGTCG
CCAATGCCGAGGAACTTCGCTACCGCTTCCCGTTCGACGGCTCATCCAAC
CAGGGCATGCCGTCCCACCTCGCCAGCTACACAAAGGGCTTACCACACGA
TGTTGAAACCGGCGTTTTGGTCAACCCTAATGATTTCCAGGCTTTCATTC
GCGCCATGGACTCCGGCGACACGTTCTCCATTCGTGACGTCCCGCTTGGC
CCGCAGATCCCCGAGCCGCGCTTCAGCTCTGGTATCGCAAAAGGCGCTGA
CGTGCGTGCGTGGGAGTCCATGGCGGCCGGACAGACTTATGATCTGGAGG
GCCCCGATGCCCAATCCCTCACCATGCCACCAGCTCCGGCCTTGGATAGT
GCCGAACTCGTAACCGAGATTTCTGAAAGCTACTTGATGGCCTTGCTCCG
CGACGTTCCGTTCATCGAATTTAGCAGCAACTCTGTGCTCGTCGATGCCA
TTGAAAGCTTGAACTCTACCAAGTGGATCAAGTATGGCATTGATCCGTCC
ACCATTCCCTTGTCTCTCACTCAAGCGGAACGCGGTCGCCTTCGAGATCA
AGTTGATGTGCAAAACGTTTTCCGTGGAGTTACCAGAGGTGATCACGAAG
GCCCATACATTTCCCAATTCCTTCTTATCGGAAATACCGGCATTGCGGAT
GGAAATCAAATCCACGACGGCTTGATTCAGTACGGCGCTCATCGCGTGGA
TCAGAAGGTGCGAGTGGCCGAGAAGGAACGCGACTTTATGACCACATGGC
AGTCGTTCATCGACGTTCAAAACGGTGCCGACGTGCGCGGCAGAGAGCAA
TACGAGGACGGTTTCCGATTCATTACCACGCCGCGTGACTTGGCTACATA
CGTTCATTTTGATGCCTTGTACCAGGCGTATTTGAATGCATGCCTCATCC
TGCTTGGAATGAAGGTTCCCTTCGACAAAGGATTGCCGTATCAACTGGAT
GATGACATTGATCATCAACAAACGTTCGCCACTTTTGGAGGACCTCATAT
CCTTTCGCTGGTGACCGAGGTGGCCACGCGCGCGTTGAAGGCAGTGCGAT
TCCAAAAGTTTAACGTGCACAGACGCCTTCGCCCCGAGGCAGTGGCCGGT
CGCGTCGAGAAGTTCCGCACAAAGAGCGGTGACCAACTGTACGCCGGTGT
GAAGCCTCTATTTGACGAACTTGACAAGGATATGTTATCCAAGATTGGAA
TGCACAACCAAAAGCAAAACAATAAGTCGGACAACGGACAGGCTAGAAGC
GAGGATGAGGGAGCTGGTGCCAACTACTTGTTGCCCATGGCGTTCCCAGA
GGGAAGTCCCATGCATCCAAGTTACGGTGCCGGTCATGCGACTGTGGCGG
GTGCGTGTGTAACAATTCTCAAGGCGTTCTTTGACCATGGGTACGAATTG
CGCATGAAGGATTCGAGCGGTAAGATGCAACCGTTTGCCTTCGTGGCGAA
TGCCGAAGGTACCAGCCTTGTGAACCAGGTTGGTAACTACGATAATAAGG
CGTTGACAGTTGAGGGTGAATTGAACAAGGTTTGCTCAAACATCTGTATA
GGCCGCAACTGGGCTGGTGTTCACTACTTCAGTGACTACATTGAATCGAT
CAGGGTCGGCGAAGAAATCGCCATTGGAGTGTTGGAAGAGCAGAAATTGA
CGTACGGCGAAAACTTCTCCATATCCGTTCCCCTGTTTGACGGCTCTGTG
TACCGCATTTAG

Coding sequence (CDS) from alignment at tig00000017_pilon:1085430..1087241-

>Gchil899.t1 ID=Gchil899.t1|Name=Gchil899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00000017_pilon:1085430..1087241- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCACCAAGCACACCAACCGCCTGGACTCCGCCTACAGCGTGCG
CCAACAGGCCGCAAATCTCGCCAAGAGACGTCCGCATGCCACCCACGTCG
CCAATGCCGAGGAACTTCGCTACCGCTTCCCGTTCGACGGCTCATCCAAC
CAGGGCATGCCGTCCCACCTCGCCAGCTACACAAAGGGCTTACCACACGA
TGTTGAAACCGGCGTTTTGGTCAACCCTAATGATTTCCAGGCTTTCATTC
GCGCCATGGACTCCGGCGACACGTTCTCCATTCGTGACGTCCCGCTTGGC
CCGCAGATCCCCGAGCCGCGCTTCAGCTCTGGTATCGCAAAAGGCGCTGA
CGTGCGTGCGTGGGAGTCCATGGCGGCCGGACAGACTTATGATCTGGAGG
GCCCCGATGCCCAATCCCTCACCATGCCACCAGCTCCGGCCTTGGATAGT
GCCGAACTCGTAACCGAGATTTCTGAAAGCTACTTGATGGCCTTGCTCCG
CGACGTTCCGTTCATCGAATTTAGCAGCAACTCTGTGCTCGTCGATGCCA
TTGAAAGCTTGAACTCTACCAAGTGGATCAAGTATGGCATTGATCCGTCC
ACCATTCCCTTGTCTCTCACTCAAGCGGAACGCGGTCGCCTTCGAGATCA
AGTTGATGTGCAAAACGTTTTCCGTGGAGTTACCAGAGGTGATCACGAAG
GCCCATACATTTCCCAATTCCTTCTTATCGGAAATACCGGCATTGCGGAT
GGAAATCAAATCCACGACGGCTTGATTCAGTACGGCGCTCATCGCGTGGA
TCAGAAGGTGCGAGTGGCCGAGAAGGAACGCGACTTTATGACCACATGGC
AGTCGTTCATCGACGTTCAAAACGGTGCCGACGTGCGCGGCAGAGAGCAA
TACGAGGACGGTTTCCGATTCATTACCACGCCGCGTGACTTGGCTACATA
CGTTCATTTTGATGCCTTGTACCAGGCGTATTTGAATGCATGCCTCATCC
TGCTTGGAATGAAGGTTCCCTTCGACAAAGGATTGCCGTATCAACTGGAT
GATGACATTGATCATCAACAAACGTTCGCCACTTTTGGAGGACCTCATAT
CCTTTCGCTGGTGACCGAGGTGGCCACGCGCGCGTTGAAGGCAGTGCGAT
TCCAAAAGTTTAACGTGCACAGACGCCTTCGCCCCGAGGCAGTGGCCGGT
CGCGTCGAGAAGTTCCGCACAAAGAGCGGTGACCAACTGTACGCCGGTGT
GAAGCCTCTATTTGACGAACTTGACAAGGATATGTTATCCAAGATTGGAA
TGCACAACCAAAAGCAAAACAATAAGTCGGACAACGGACAGGCTAGAAGC
GAGGATGAGGGAGCTGGTGCCAACTACTTGTTGCCCATGGCGTTCCCAGA
GGGAAGTCCCATGCATCCAAGTTACGGTGCCGGTCATGCGACTGTGGCGG
GTGCGTGTGTAACAATTCTCAAGGCGTTCTTTGACCATGGGTACGAATTG
CGCATGAAGGATTCGAGCGGTAAGATGCAACCGTTTGCCTTCGTGGCGAA
TGCCGAAGGTACCAGCCTTGTGAACCAGGTTGGTAACTACGATAATAAGG
CGTTGACAGTTGAGGGTGAATTGAACAAGGTTTGCTCAAACATCTGTATA
GGCCGCAACTGGGCTGGTGTTCACTACTTCAGTGACTACATTGAATCGAT
CAGGGTCGGCGAAGAAATCGCCATTGGAGTGTTGGAAGAGCAGAAATTGA
CGTACGGCGAAAACTTCTCCATATCCGTTCCCCTGTTTGACGGCTCTGTG
TACCGCATTTAG