Gchil8965.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8965.t1
Unique NameGchil8965.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:505597..506478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9305.ENSSHAP00000012643
Preferred nameCOPE
PFAMsCoatomer_E
Max annot lvl33208|Metazoa
KEGG koko:K17268
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0008150,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827
Evalue1.66e-61
EggNOG OGsKOG3081@1|root,KOG3081@2759|Eukaryota,38HBK@33154|Opisthokonta,3BJ6C@33208|Metazoa,3CVAE@33213|Bilateria,4892P@7711|Chordata,48Y02@7742|Vertebrata,3JB7G@40674|Mammalia,4K1BW@9263|Metatheria
DescriptionThe coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
COG categoryU
BRITEko00000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8965Gchil8965Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 505597..506478 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8965.t1.start1Gchil8965.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 505597..505599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8965.t1.CDS1Gchil8965.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 505597..506478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8965.t1.exon1Gchil8965.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 505597..506478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8965.t1.stop1Gchil8965.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 506476..506478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8965.t1Gchil8965.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 505597..506478 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8965.t1 ID=Gchil8965.t1|Name=Gchil8965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp
MSDELFELRNYFYLGNLASAAQEGETVSVDDQKSEIQRDVIMKRIDLAKG
NYDAIIASVSDHSAPALQLVKVLAQLRNNPSSSETAAAKVQQLATDEIAS
ASPSCLLMCAIVYAQLGDFDNALRSANQVRSLEELAVMVQVLLRMDRPDA
AEKEVAEMQSIDEDATLTQLANAWVHLYKGGEGVQEAIYMYQDLLERHGA
TDQVLNGMAVCHLAMGKPDESERVLTEALTKNPNCVTSLINVICSSNYRN
KPSVLVNRYFAQLQKVAPSNAWLHDYRQKEVEFDTLAKELTTA*
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spliced messenger RNA

>Gchil8965.t1 ID=Gchil8965.t1|Name=Gchil8965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004370_pilon:505597..506478+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACGAACTATTCGAGTTGCGTAACTACTTCTATCTCGGGAACTT
GGCCTCTGCCGCCCAAGAAGGGGAAACTGTATCCGTTGATGACCAGAAAT
CCGAAATACAGCGCGATGTAATCATGAAACGCATCGACCTAGCCAAGGGG
AACTACGATGCCATAATTGCATCCGTGTCCGATCATTCCGCACCTGCCTT
GCAGTTGGTGAAAGTTTTGGCTCAACTAAGAAATAACCCGTCTTCGTCAG
AGACCGCCGCAGCAAAAGTACAACAATTAGCGACAGATGAGATTGCTTCG
GCTTCGCCAAGTTGTTTGTTGATGTGTGCTATTGTCTACGCGCAACTTGG
TGATTTTGACAACGCTTTGCGTAGTGCTAATCAGGTCCGATCTTTGGAAG
AGCTGGCTGTTATGGTTCAGGTTTTGCTCCGAATGGACCGTCCCGATGCC
GCTGAAAAGGAAGTTGCGGAGATGCAATCAATTGACGAGGATGCTACGCT
AACTCAGTTAGCGAATGCCTGGGTTCATCTTTACAAGGGAGGAGAAGGAG
TCCAGGAAGCTATTTATATGTATCAGGATCTCTTAGAGCGGCACGGTGCC
ACGGATCAAGTCCTAAATGGCATGGCAGTTTGTCATCTTGCTATGGGAAA
ACCCGATGAGAGCGAACGAGTTCTTACTGAGGCTCTGACAAAGAATCCCA
ACTGTGTCACATCTCTTATTAATGTGATATGCTCATCAAATTACAGGAAT
AAGCCTTCGGTGCTTGTCAATAGATACTTCGCCCAGCTTCAGAAAGTTGC
CCCGTCAAATGCATGGTTGCATGACTACCGCCAAAAAGAAGTCGAGTTCG
ATACCCTTGCGAAAGAATTAACCACAGCATAG
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protein sequence of Gchil8965.t1

>Gchil8965.t1 ID=Gchil8965.t1|Name=Gchil8965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MSDELFELRNYFYLGNLASAAQEGETVSVDDQKSEIQRDVIMKRIDLAKG
NYDAIIASVSDHSAPALQLVKVLAQLRNNPSSSETAAAKVQQLATDEIAS
ASPSCLLMCAIVYAQLGDFDNALRSANQVRSLEELAVMVQVLLRMDRPDA
AEKEVAEMQSIDEDATLTQLANAWVHLYKGGEGVQEAIYMYQDLLERHGA
TDQVLNGMAVCHLAMGKPDESERVLTEALTKNPNCVTSLINVICSSNYRN
KPSVLVNRYFAQLQKVAPSNAWLHDYRQKEVEFDTLAKELTTA*
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mRNA from alignment at tig00004370_pilon:505597..506478+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8965.t1 ID=Gchil8965.t1|Name=Gchil8965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004370_pilon:505597..506478+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACGAACTATTCGAGTTGCGTAACTACTTCTATCTCGGGAACTT
GGCCTCTGCCGCCCAAGAAGGGGAAACTGTATCCGTTGATGACCAGAAAT
CCGAAATACAGCGCGATGTAATCATGAAACGCATCGACCTAGCCAAGGGG
AACTACGATGCCATAATTGCATCCGTGTCCGATCATTCCGCACCTGCCTT
GCAGTTGGTGAAAGTTTTGGCTCAACTAAGAAATAACCCGTCTTCGTCAG
AGACCGCCGCAGCAAAAGTACAACAATTAGCGACAGATGAGATTGCTTCG
GCTTCGCCAAGTTGTTTGTTGATGTGTGCTATTGTCTACGCGCAACTTGG
TGATTTTGACAACGCTTTGCGTAGTGCTAATCAGGTCCGATCTTTGGAAG
AGCTGGCTGTTATGGTTCAGGTTTTGCTCCGAATGGACCGTCCCGATGCC
GCTGAAAAGGAAGTTGCGGAGATGCAATCAATTGACGAGGATGCTACGCT
AACTCAGTTAGCGAATGCCTGGGTTCATCTTTACAAGGGAGGAGAAGGAG
TCCAGGAAGCTATTTATATGTATCAGGATCTCTTAGAGCGGCACGGTGCC
ACGGATCAAGTCCTAAATGGCATGGCAGTTTGTCATCTTGCTATGGGAAA
ACCCGATGAGAGCGAACGAGTTCTTACTGAGGCTCTGACAAAGAATCCCA
ACTGTGTCACATCTCTTATTAATGTGATATGCTCATCAAATTACAGGAAT
AAGCCTTCGGTGCTTGTCAATAGATACTTCGCCCAGCTTCAGAAAGTTGC
CCCGTCAAATGCATGGTTGCATGACTACCGCCAAAAAGAAGTCGAGTTCG
ATACCCTTGCGAAAGAATTAACCACAGCATAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:505597..506478+

>Gchil8965.t1 ID=Gchil8965.t1|Name=Gchil8965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00004370_pilon:505597..506478+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGACGAACTATTCGAGTTGCGTAACTACTTCTATCTCGGGAACTT
GGCCTCTGCCGCCCAAGAAGGGGAAACTGTATCCGTTGATGACCAGAAAT
CCGAAATACAGCGCGATGTAATCATGAAACGCATCGACCTAGCCAAGGGG
AACTACGATGCCATAATTGCATCCGTGTCCGATCATTCCGCACCTGCCTT
GCAGTTGGTGAAAGTTTTGGCTCAACTAAGAAATAACCCGTCTTCGTCAG
AGACCGCCGCAGCAAAAGTACAACAATTAGCGACAGATGAGATTGCTTCG
GCTTCGCCAAGTTGTTTGTTGATGTGTGCTATTGTCTACGCGCAACTTGG
TGATTTTGACAACGCTTTGCGTAGTGCTAATCAGGTCCGATCTTTGGAAG
AGCTGGCTGTTATGGTTCAGGTTTTGCTCCGAATGGACCGTCCCGATGCC
GCTGAAAAGGAAGTTGCGGAGATGCAATCAATTGACGAGGATGCTACGCT
AACTCAGTTAGCGAATGCCTGGGTTCATCTTTACAAGGGAGGAGAAGGAG
TCCAGGAAGCTATTTATATGTATCAGGATCTCTTAGAGCGGCACGGTGCC
ACGGATCAAGTCCTAAATGGCATGGCAGTTTGTCATCTTGCTATGGGAAA
ACCCGATGAGAGCGAACGAGTTCTTACTGAGGCTCTGACAAAGAATCCCA
ACTGTGTCACATCTCTTATTAATGTGATATGCTCATCAAATTACAGGAAT
AAGCCTTCGGTGCTTGTCAATAGATACTTCGCCCAGCTTCAGAAAGTTGC
CCCGTCAAATGCATGGTTGCATGACTACCGCCAAAAAGAAGTCGAGTTCG
ATACCCTTGCGAAAGAATTAACCACAGCATAG
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