Gchil896.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil896.t1
Unique NameGchil896.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1042091..1043822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102125.Xen7305DRAFT_00009790
PFAMsAn_peroxidase,HemolysinCabind
Max annot lvl1117|Cyanobacteria
KEGG koko:K19511
Evalue1.7e-26
EggNOG OGsCOG2931@1|root,COG3240@1|root,COG2931@2|Bacteria,COG3240@2|Bacteria,1G1JS@1117|Cyanobacteria
EC1.11.1.7
DescriptionAnimal haem peroxidase
COG categoryC
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil896Gchil896Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 1042091..1043822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil896.t1Gchil896.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 1042091..1043822 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil896.t1.start1Gchil896.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 1042091..1042093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil896.t1.CDS1Gchil896.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1042091..1042421 +
Gchil896.t1.CDS2Gchil896.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1042608..1043046 +
Gchil896.t1.CDS3Gchil896.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1043786..1043822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil896.t1.exon1Gchil896.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1042091..1042421 +
Gchil896.t1.exon2Gchil896.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1042608..1043046 +
Gchil896.t1.exon3Gchil896.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1043786..1043822 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil896.t1.intron1Gchil896.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 1042422..1042607 +
Gchil896.t1.intron2Gchil896.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 1043047..1043785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil896.t1.stop1Gchil896.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 1043820..1043822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil896.t1 ID=Gchil896.t1|Name=Gchil896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=269bp
MFISVCFLGIFAVLVTIADTQQPFSNARGRGTRAFSPLPPPTSISSAGLD
PECLGLTFRTINGRCTSQANAALGEARRAQFSYFNVNSAEFGGEDLPSPR
LVSNIVVEQDGSAVVRPITSATSALDLSTVYGPDVDRAANLRVTGDCRLK
TLDNFLPLNDANMDNSPPNTGSRFFFAGDTRSNETPMLTVMHTIWVREHN
RICEVLESDSDFGITDPDELYEMARAVNIAEYQKIVYNEWLPAILGSTLS
TYSGYDFSILCYDVAAAT*
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spliced messenger RNA

>Gchil896.t1 ID=Gchil896.t1|Name=Gchil896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000017_pilon:1042091..1043822+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATTTCAGTCTGCTTCTTGGGCATCTTTGCTGTTTTGGTGACTAT
CGCCGATACTCAACAACCTTTTTCCAACGCACGCGGGAGGGGGACGAGAG
CTTTTTCCCCGCTTCCGCCACCGACTTCAATTTCTTCCGCTGGCCTAGAC
CCCGAGTGCCTGGGTCTCACATTCCGCACCATCAACGGGAGATGCACATC
TCAGGCGAACGCTGCACTTGGAGAGGCCCGTCGGGCACAATTCAGTTACT
TCAATGTGAATTCCGCAGAGTTTGGTGGTGAGGATCTTCCAAGCCCTCGT
CTTGTCTCCAACATTGTCGTGGAGCAAGATGGTTCTGCAGTTGTGAGGCC
AATTACTTCAGCAACATCCGCACTAGACCTATCCACAGTATACGGTCCAG
ATGTGGATCGAGCGGCAAACCTCAGAGTTACAGGTGATTGTCGTCTGAAG
ACGCTCGACAATTTTCTTCCTCTTAATGATGCGAATATGGACAACTCGCC
TCCTAATACTGGCAGTCGATTCTTTTTCGCCGGGGATACAAGAAGTAACG
AGACTCCCATGTTAACCGTTATGCACACAATATGGGTACGGGAACACAAT
AGAATATGCGAAGTTCTTGAGTCAGATTCCGATTTCGGCATCACCGATCC
GGATGAGCTGTATGAGATGGCTCGTGCAGTCAATATTGCCGAGTACCAGA
AGATTGTTTACAATGAGTGGCTTCCTGCGATTCTCGGTTCCACTCTAAGC
ACGTACTCTGGATACGACTTTTCCATCCTCTGCTACGACGTAGCTGCAGC
AACATGA
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protein sequence of Gchil896.t1

>Gchil896.t1 ID=Gchil896.t1|Name=Gchil896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=269bp
MFISVCFLGIFAVLVTIADTQQPFSNARGRGTRAFSPLPPPTSISSAGLD
PECLGLTFRTINGRCTSQANAALGEARRAQFSYFNVNSAEFGGEDLPSPR
LVSNIVVEQDGSAVVRPITSATSALDLSTVYGPDVDRAANLRVTGDCRLK
TLDNFLPLNDANMDNSPPNTGSRFFFAGDTRSNETPMLTVMHTIWVREHN
RICEVLESDSDFGITDPDELYEMARAVNIAEYQKIVYNEWLPAILGSTLS
TYSGYDFSILCYDVAAAT*
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mRNA from alignment at tig00000017_pilon:1042091..1043822+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil896.t1 ID=Gchil896.t1|Name=Gchil896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1732bp|location=Sequence derived from alignment at tig00000017_pilon:1042091..1043822+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCATTTCAGTCTGCTTCTTGGGCATCTTTGCTGTTTTGGTGACTAT
CGCCGATACTCAACAACCTTTTTCCAACGCACGCGGGAGGGGGACGAGAG
CTTTTTCCCCGCTTCCGCCACCGACTTCAATTTCTTCCGCTGGCCTAGAC
CCCGAGTGCCTGGGTCTCACATTCCGCACCATCAACGGGAGATGCACATC
TCAGGCGAACGCTGCACTTGGAGAGGCCCGTCGGGCACAATTCAGTTACT
TCAATGTGAATTCCGCAGAGTTTGGTGGTGAGGATCTTCCAAGCCCTCGT
CTTGTCTCCAACATTGTCGTGGAGCAAGATGGTGAGAGTACCAACTCGCG
ACGGctaaatgaattgttcactttctttggccagtttattgatcatgatt
ttgctctcacacctttaaatagagacgaagaggttgaaattgaggtgcca
gaagatgacccctccctgtcaggtcctttagagttcttccgttcTACCCG
TGAGGCTGTCGTTGCAGGTTCTGCAGTTGTGAGGCCAATTACTTCAGCAA
CATCCGCACTAGACCTATCCACAGTATACGGTCCAGATGTGGATCGAGCG
GCAAACCTCAGAGTTACAGGTGATTGTCGTCTGAAGACGCTCGACAATTT
TCTTCCTCTTAATGATGCGAATATGGACAACTCGCCTCCTAATACTGGCA
GTCGATTCTTTTTCGCCGGGGATACAAGAAGTAACGAGACTCCCATGTTA
ACCGTTATGCACACAATATGGGTACGGGAACACAATAGAATATGCGAAGT
TCTTGAGTCAGATTCCGATTTCGGCATCACCGATCCGGATGAGCTGTATG
AGATGGCTCGTGCAGTCAATATTGCCGAGTACCAGAAGATTGTTTACAAT
GAGTGGCTTCCTGCGATTCTCGGTTCCACTCTAAGCACGTACTCTGGATA
CGACTTGTCagtggatcccactatcagcgtcgagtttaccacggctgctt
tccgtcttggtcataccttggtgggaaatgatgtcacTCGGGTAGATTCT
CGAGGAAACACCCTCACACCTCTGCCCGCGGCTGACATGTTCTTCATCAC
CGCGAATCAATTCAAAGCTTTCGGTCTGGAAGATTTCATTCGTGGTGCCG
CGGCAACCAGAGCACAAGAGTTCGACGAAAAGATTGTTGACAGTTTGAGA
AATTTTTTGTTTGAAAACGTTCCAGAGGAGGAAGGTTTCGATCTGATGGC
TCTCAACTTGCAGCGCGCGCGTGATCACAACGTACCATCGTTTAATGAAA
TTCGCGAGTTCTTCCTGGGCAGCAGGGCCACAAGTTTCGAGCAAATTTCC
ACATCtgcagctgctcaacttgaagaggcgtatggtgatgtggacaaggt
ggaggcttggatcgggctgatggcggagaacaaacgaccaggctccagtg
tcggtccgactctggatgcgttcctgagaactgaattcggacgccttcgt
gatggagatcagttcttttatctgatatctggtcgcgtgccggatgttgt
gctcgacacgtacccggaattcaattctgaaatattctcccctagatcct
tgttcaaccagattctgaagaggaactccgatgtcgagaacaggttcctc
ccagggaactccaacgctttcttAGGATAACCTTCGTTGTGATAGTTCCA
TCCTCTGCTACGACGTAGCTGCAGCAACATGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:1042091..1043822+

>Gchil896.t1 ID=Gchil896.t1|Name=Gchil896.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000017_pilon:1042091..1043822+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCATTTCAGTCTGCTTCTTGGGCATCTTTGCTGTTTTGGTGACTAT
CGCCGATACTCAACAACCTTTTTCCAACGCACGCGGGAGGGGGACGAGAG
CTTTTTCCCCGCTTCCGCCACCGACTTCAATTTCTTCCGCTGGCCTAGAC
CCCGAGTGCCTGGGTCTCACATTCCGCACCATCAACGGGAGATGCACATC
TCAGGCGAACGCTGCACTTGGAGAGGCCCGTCGGGCACAATTCAGTTACT
TCAATGTGAATTCCGCAGAGTTTGGTGGTGAGGATCTTCCAAGCCCTCGT
CTTGTCTCCAACATTGTCGTGGAGCAAGATGGTTCTGCAGTTGTGAGGCC
AATTACTTCAGCAACATCCGCACTAGACCTATCCACAGTATACGGTCCAG
ATGTGGATCGAGCGGCAAACCTCAGAGTTACAGGTGATTGTCGTCTGAAG
ACGCTCGACAATTTTCTTCCTCTTAATGATGCGAATATGGACAACTCGCC
TCCTAATACTGGCAGTCGATTCTTTTTCGCCGGGGATACAAGAAGTAACG
AGACTCCCATGTTAACCGTTATGCACACAATATGGGTACGGGAACACAAT
AGAATATGCGAAGTTCTTGAGTCAGATTCCGATTTCGGCATCACCGATCC
GGATGAGCTGTATGAGATGGCTCGTGCAGTCAATATTGCCGAGTACCAGA
AGATTGTTTACAATGAGTGGCTTCCTGCGATTCTCGGTTCCACTCTAAGC
ACGTACTCTGGATACGACTTTTCCATCCTCTGCTACGACGTAGCTGCAGC
AACATGA
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