Gchil8957.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8957.t1
Unique NameGchil8957.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:428780..429913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP52238
Preferred nameRRP1B
PFAMsNop52
Max annot lvl33208|Metazoa
KEGG koko:K14849
GOsGO:0000785,GO:0000791,GO:0000792,GO:0001652,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010628,GO:0010921,GO:0010923,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019219,GO:0019220,GO:0019222,GO:0022613,GO:0030684,GO:0030687,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034260,GO:0034470,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0035821,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043087,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050434,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051336,GO:0051346,GO:0051702,GO:0051704,GO:0051707,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098586,GO:0140110,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue5.68e-21
EggNOG OGsKOG3911@1|root,KOG3911@2759|Eukaryota,38G4R@33154|Opisthokonta,3BCTG@33208|Metazoa
Descriptionribosomal RNA processing
COG categoryA
BRITEko00000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8957Gchil8957Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 428780..429913 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8957.t1.stop1Gchil8957.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 428780..428782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8957.t1.CDS1Gchil8957.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 428780..429913 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8957.t1.exon1Gchil8957.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 428780..429913 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8957.t1.start1Gchil8957.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 429911..429913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8957.t1Gchil8957.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 428780..429913 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8957.t1 ID=Gchil8957.t1|Name=Gchil8957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=378bp
MLFLSKRHDGEHTCVPVPSRLRRLLEKRLRVVPVFHKVAEEMKSQHQIKF
KRKRPKKRVGNSRAVEHLQESLDVVNNRIVVGERELKFARALSDTERRVR
EASLESLQSWLQQNGEKLQVREMDRLWKALFYCVWMADKAHVITSTIANV
VGLADIVGWPFLSAFFNCMMREWFGIDRHRVDKYYELANAALSKSTEMVL
QKDADEAFMESLSKMMNILKAQVWDQAHKQGQGFALHVLDVYVDKVMDPL
LKRGNLVSGNGVHKVFDRILEGPVQIMKQPQKYSPALSKRIADRILDRLI
EAVSSEEIGLKPKFRRDMIARASKHVMSFASNSCTPDNLRKDLYATRERM
KKVVSEFDASQKQKVESKELEKGAKEQ*
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spliced messenger RNA

>Gchil8957.t1 ID=Gchil8957.t1|Name=Gchil8957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004370_pilon:428780..429913- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTTCTTTCAAAACGCCACGACGGCGAGCACACTTGTGTGCCAGT
CCCGTCCAGGCTGAGACGTCTTCTGGAAAAACGGCTTCGAGTGGTCCCAG
TTTTCCACAAAGTCGCAGAAGAAATGAAGAGTCAGCACCAGATTAAGTTC
AAGCGAAAACGCCCGAAAAAGAGAGTGGGAAATAGCAGAGCAGTAGAGCA
TTTGCAGGAGTCCCTTGATGTCGTGAACAACAGAATAGTAGTAGGAGAGC
GCGAACTTAAGTTTGCGCGAGCGCTTTCGGACACCGAACGAAGAGTGCGA
GAAGCTTCACTAGAATCTCTTCAATCATGGTTGCAACAAAACGGTGAAAA
GTTGCAAGTAAGAGAAATGGACCGTCTTTGGAAGGCGTTGTTTTACTGTG
TCTGGATGGCAGACAAGGCACACGTCATTACAAGCACAATCGCAAACGTG
GTTGGACTCGCTGACATTGTCGGATGGCCTTTTCTCTCAGCCTTTTTCAA
CTGCATGATGCGCGAGTGGTTTGGCATTGACCGACATCGTGTTGATAAGT
ATTACGAACTTGCCAATGCTGCGTTGAGCAAGTCAACAGAAATGGTACTA
CAAAAGGATGCAGACGAAGCTTTCATGGAAAGCCTGTCTAAAATGATGAA
TATCCTGAAAGCGCAGGTTTGGGACCAAGCCCATAAACAAGGACAAGGAT
TTGCGCTGCACGTTCTAGACGTCTATGTGGACAAGGTTATGGATCCATTG
CTCAAGCGAGGGAACTTGGTCTCCGGAAACGGTGTTCACAAGGTATTTGA
TAGAATTCTAGAGGGACCGGTGCAAATCATGAAGCAGCCTCAGAAGTACT
CTCCAGCGCTCAGTAAGAGAATCGCCGATCGCATCTTGGATCGACTTATA
GAAGCAGTCAGTTCAGAGGAAATTGGATTAAAGCCAAAGTTTCGAAGGGA
TATGATCGCAAGGGCCTCCAAACATGTGATGTCGTTCGCGTCGAATAGTT
GCACTCCGGACAATCTTCGAAAGGACTTGTATGCAACAAGAGAACGAATG
AAAAAAGTGGTTTCTGAGTTCGACGCTTCCCAAAAGCAGAAGGTCGAATC
AAAAGAGTTGGAGAAGGGGGCTAAAGAACAGTAA
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protein sequence of Gchil8957.t1

>Gchil8957.t1 ID=Gchil8957.t1|Name=Gchil8957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=378bp
MLFLSKRHDGEHTCVPVPSRLRRLLEKRLRVVPVFHKVAEEMKSQHQIKF
KRKRPKKRVGNSRAVEHLQESLDVVNNRIVVGERELKFARALSDTERRVR
EASLESLQSWLQQNGEKLQVREMDRLWKALFYCVWMADKAHVITSTIANV
VGLADIVGWPFLSAFFNCMMREWFGIDRHRVDKYYELANAALSKSTEMVL
QKDADEAFMESLSKMMNILKAQVWDQAHKQGQGFALHVLDVYVDKVMDPL
LKRGNLVSGNGVHKVFDRILEGPVQIMKQPQKYSPALSKRIADRILDRLI
EAVSSEEIGLKPKFRRDMIARASKHVMSFASNSCTPDNLRKDLYATRERM
KKVVSEFDASQKQKVESKELEKGAKEQ*
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mRNA from alignment at tig00004370_pilon:428780..429913-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8957.t1 ID=Gchil8957.t1|Name=Gchil8957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004370_pilon:428780..429913- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTTTCTTTCAAAACGCCACGACGGCGAGCACACTTGTGTGCCAGT
CCCGTCCAGGCTGAGACGTCTTCTGGAAAAACGGCTTCGAGTGGTCCCAG
TTTTCCACAAAGTCGCAGAAGAAATGAAGAGTCAGCACCAGATTAAGTTC
AAGCGAAAACGCCCGAAAAAGAGAGTGGGAAATAGCAGAGCAGTAGAGCA
TTTGCAGGAGTCCCTTGATGTCGTGAACAACAGAATAGTAGTAGGAGAGC
GCGAACTTAAGTTTGCGCGAGCGCTTTCGGACACCGAACGAAGAGTGCGA
GAAGCTTCACTAGAATCTCTTCAATCATGGTTGCAACAAAACGGTGAAAA
GTTGCAAGTAAGAGAAATGGACCGTCTTTGGAAGGCGTTGTTTTACTGTG
TCTGGATGGCAGACAAGGCACACGTCATTACAAGCACAATCGCAAACGTG
GTTGGACTCGCTGACATTGTCGGATGGCCTTTTCTCTCAGCCTTTTTCAA
CTGCATGATGCGCGAGTGGTTTGGCATTGACCGACATCGTGTTGATAAGT
ATTACGAACTTGCCAATGCTGCGTTGAGCAAGTCAACAGAAATGGTACTA
CAAAAGGATGCAGACGAAGCTTTCATGGAAAGCCTGTCTAAAATGATGAA
TATCCTGAAAGCGCAGGTTTGGGACCAAGCCCATAAACAAGGACAAGGAT
TTGCGCTGCACGTTCTAGACGTCTATGTGGACAAGGTTATGGATCCATTG
CTCAAGCGAGGGAACTTGGTCTCCGGAAACGGTGTTCACAAGGTATTTGA
TAGAATTCTAGAGGGACCGGTGCAAATCATGAAGCAGCCTCAGAAGTACT
CTCCAGCGCTCAGTAAGAGAATCGCCGATCGCATCTTGGATCGACTTATA
GAAGCAGTCAGTTCAGAGGAAATTGGATTAAAGCCAAAGTTTCGAAGGGA
TATGATCGCAAGGGCCTCCAAACATGTGATGTCGTTCGCGTCGAATAGTT
GCACTCCGGACAATCTTCGAAAGGACTTGTATGCAACAAGAGAACGAATG
AAAAAAGTGGTTTCTGAGTTCGACGCTTCCCAAAAGCAGAAGGTCGAATC
AAAAGAGTTGGAGAAGGGGGCTAAAGAACAGTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:428780..429913-

>Gchil8957.t1 ID=Gchil8957.t1|Name=Gchil8957.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00004370_pilon:428780..429913- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTTTCTTTCAAAACGCCACGACGGCGAGCACACTTGTGTGCCAGT
CCCGTCCAGGCTGAGACGTCTTCTGGAAAAACGGCTTCGAGTGGTCCCAG
TTTTCCACAAAGTCGCAGAAGAAATGAAGAGTCAGCACCAGATTAAGTTC
AAGCGAAAACGCCCGAAAAAGAGAGTGGGAAATAGCAGAGCAGTAGAGCA
TTTGCAGGAGTCCCTTGATGTCGTGAACAACAGAATAGTAGTAGGAGAGC
GCGAACTTAAGTTTGCGCGAGCGCTTTCGGACACCGAACGAAGAGTGCGA
GAAGCTTCACTAGAATCTCTTCAATCATGGTTGCAACAAAACGGTGAAAA
GTTGCAAGTAAGAGAAATGGACCGTCTTTGGAAGGCGTTGTTTTACTGTG
TCTGGATGGCAGACAAGGCACACGTCATTACAAGCACAATCGCAAACGTG
GTTGGACTCGCTGACATTGTCGGATGGCCTTTTCTCTCAGCCTTTTTCAA
CTGCATGATGCGCGAGTGGTTTGGCATTGACCGACATCGTGTTGATAAGT
ATTACGAACTTGCCAATGCTGCGTTGAGCAAGTCAACAGAAATGGTACTA
CAAAAGGATGCAGACGAAGCTTTCATGGAAAGCCTGTCTAAAATGATGAA
TATCCTGAAAGCGCAGGTTTGGGACCAAGCCCATAAACAAGGACAAGGAT
TTGCGCTGCACGTTCTAGACGTCTATGTGGACAAGGTTATGGATCCATTG
CTCAAGCGAGGGAACTTGGTCTCCGGAAACGGTGTTCACAAGGTATTTGA
TAGAATTCTAGAGGGACCGGTGCAAATCATGAAGCAGCCTCAGAAGTACT
CTCCAGCGCTCAGTAAGAGAATCGCCGATCGCATCTTGGATCGACTTATA
GAAGCAGTCAGTTCAGAGGAAATTGGATTAAAGCCAAAGTTTCGAAGGGA
TATGATCGCAAGGGCCTCCAAACATGTGATGTCGTTCGCGTCGAATAGTT
GCACTCCGGACAATCTTCGAAAGGACTTGTATGCAACAAGAGAACGAATG
AAAAAAGTGGTTTCTGAGTTCGACGCTTCCCAAAAGCAGAAGGTCGAATC
AAAAGAGTTGGAGAAGGGGGCTAAAGAACAGTAA
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